Wall clock time and date at job start Wed Apr 1 2020 00:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46819 * 2 1 4 4 C 1.50704 * 109.46926 * 240.00446 * 2 1 3 5 5 O 1.21292 * 119.99944 * 264.60658 * 4 2 1 6 6 N 1.34781 * 120.00086 * 84.61343 * 4 2 1 7 7 C 1.46531 * 124.97973 * 354.86652 * 6 4 2 8 8 C 1.53737 * 105.20032 * 179.97438 * 7 6 4 9 9 C 1.51216 * 104.58137 * 359.97438 * 8 7 6 10 10 C 1.38182 * 130.97593 * 180.02562 * 9 8 7 11 11 C 1.38227 * 120.15573 * 179.97438 * 10 9 8 12 12 C 1.38302 * 119.82349 * 359.97438 * 11 10 9 13 13 C 1.37837 * 120.22192 * 0.02562 * 12 11 10 14 14 C 1.38561 * 108.55687 * 0.02562 * 9 8 7 15 15 N 1.46498 * 109.47239 * 120.00614 * 2 1 3 16 16 C 1.35317 * 125.86619 * 34.99707 * 15 2 1 17 17 C 1.35348 * 106.16964 * 180.02562 * 16 15 2 18 18 C 1.50709 * 126.74726 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.46831 * 94.99873 * 18 17 16 20 20 C 1.36942 * 119.99764 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99694 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99749 * 179.97438 * 20 19 18 23 23 N 1.31620 * 120.00416 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47115 * 89.99850 * 24 22 20 26 26 H 1.48495 * 109.47056 * 210.00223 * 24 22 20 27 27 H 1.48502 * 109.46854 * 330.00023 * 24 22 20 28 28 N 1.33767 * 106.50342 * 0.02562 * 17 16 15 29 29 N 1.28643 * 108.88347 * 359.73408 * 28 17 16 30 30 H 1.09008 * 109.47295 * 54.53721 * 1 2 3 31 31 H 1.09003 * 109.47421 * 174.53250 * 1 2 3 32 32 H 1.08995 * 109.47177 * 294.53566 * 1 2 3 33 33 H 1.09000 * 110.29704 * 61.03668 * 7 6 4 34 34 H 1.09003 * 110.29635 * 298.89850 * 7 6 4 35 35 H 1.09001 * 110.41115 * 241.22764 * 8 7 6 36 36 H 1.08995 * 110.42031 * 118.77589 * 8 7 6 37 37 H 1.08007 * 119.92371 * 359.95549 * 10 9 8 38 38 H 1.07994 * 120.08727 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.88671 * 179.97438 * 12 11 10 40 40 H 1.08004 * 119.85198 * 179.97438 * 13 12 11 41 41 H 1.07997 * 126.91466 * 359.97438 * 16 15 2 42 42 H 1.09000 * 109.46787 * 214.99302 * 18 17 16 43 43 H 1.08996 * 109.46922 * 334.99800 * 18 17 16 44 44 H 0.96998 * 120.00607 * 0.02562 * 19 18 17 45 45 H 0.97000 * 119.99971 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.3275 -1.8854 -1.1744 6 7 2.1536 -0.0398 -2.3934 7 6 1.7303 1.3458 -2.6122 8 6 2.0773 1.6464 -4.0795 9 6 2.6917 0.3647 -4.5956 10 6 3.1933 0.0376 -5.8410 11 6 3.7122 -1.2227 -6.0714 12 6 3.7288 -2.1567 -5.0516 13 6 3.2295 -1.8349 -3.8078 14 6 2.7028 -0.5642 -3.5676 15 7 2.0184 -0.6907 1.1961 16 6 1.4357 -1.7589 1.7882 17 6 2.2125 -2.0705 2.8518 18 6 1.9880 -3.1904 3.8351 19 7 2.7597 -4.3651 3.4219 20 6 2.7125 -5.5124 4.1680 21 1 2.1060 -5.5513 5.0608 22 6 3.4432 -6.6256 3.7761 23 7 4.1819 -6.5783 2.6878 24 14 3.3783 -8.1910 4.7935 25 1 2.2725 -9.0534 4.3048 26 1 4.6667 -8.9181 4.6658 27 1 3.1439 -7.8457 6.2187 28 7 3.2187 -1.1891 2.8588 29 7 3.0776 -0.3884 1.8619 30 1 -0.3634 0.5963 -0.8371 31 1 -0.3634 -1.0230 -0.0979 32 1 -0.3633 0.4267 0.9348 33 1 2.2762 2.0171 -1.9493 34 1 0.6568 1.4434 -2.4501 35 1 2.7961 2.4636 -4.1404 36 1 1.1756 1.8894 -4.6414 37 1 3.1796 0.7683 -6.6362 38 1 4.1043 -1.4770 -7.0450 39 1 4.1336 -3.1418 -5.2307 40 1 3.2451 -2.5690 -3.0158 41 1 0.5322 -2.2612 1.4754 42 1 2.3115 -2.8736 4.8266 43 1 0.9280 -3.4430 3.8621 44 1 3.3046 -4.3300 2.6202 45 1 4.6922 -7.3563 2.4138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603173559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:07 Heat of formation + Delta-G solvation = 98.272135 kcal Electronic energy + Delta-G solvation = -28944.347062 eV Core-core repulsion = 24963.988868 eV Total energy + Delta-G solvation = -3980.358194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -44.41857 -42.33520 -40.11333 -37.53815 -37.07296 -36.24693 -33.85522 -33.47799 -32.18786 -31.71343 -30.67348 -30.01348 -27.84077 -26.47806 -24.89791 -24.77892 -24.19643 -22.91244 -22.40351 -22.18959 -20.78476 -19.38899 -18.84825 -18.40958 -17.57278 -17.44888 -17.01456 -16.70634 -16.59284 -16.07756 -15.92887 -15.61946 -15.51388 -15.20595 -15.03961 -14.69944 -14.47690 -14.00148 -13.89990 -13.79877 -13.70541 -13.41725 -13.34794 -13.14537 -12.95414 -12.83652 -12.79538 -12.62042 -12.54663 -12.11523 -12.06226 -11.93346 -11.89057 -11.63728 -11.30463 -10.98772 -10.92599 -10.26600 -9.82075 -9.05838 -8.91739 -7.94808 -5.26988 0.09725 0.33912 0.37047 1.00238 1.31934 1.38267 1.47326 1.50369 1.59195 1.64022 2.57455 2.76255 2.82774 3.15719 3.36084 3.46840 3.49548 3.51468 3.60034 3.90275 4.03755 4.07117 4.10096 4.16079 4.18477 4.27561 4.35865 4.39788 4.45859 4.52624 4.56880 4.60872 4.79607 4.88832 4.95983 5.02943 5.06335 5.08683 5.12439 5.16806 5.35488 5.41840 5.47669 5.50020 5.55345 5.99543 6.05681 6.23218 6.59551 7.29001 7.39405 8.00222 8.26812 9.29398 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002709 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.536621 B =10333.767247 C =12033.322655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.169 0.831 4 C 0.504 3.496 5 O -0.550 6.550 6 N -0.547 5.547 7 C 0.077 3.923 8 C -0.077 4.077 9 C -0.131 4.131 10 C -0.079 4.079 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.166 4.166 14 C 0.110 3.890 15 N -0.278 5.278 16 C -0.002 4.002 17 C -0.037 4.037 18 C 0.236 3.764 19 N -0.742 5.742 20 C -0.244 4.244 21 H 0.089 0.911 22 C -0.083 4.083 23 N -0.977 5.977 24 Si 0.985 3.015 25 H -0.282 1.282 26 H -0.299 1.299 27 H -0.263 1.263 28 N -0.288 5.288 29 N -0.108 5.108 30 H 0.133 0.867 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.215 0.785 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.367 0.633 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 25.854 -21.213 35.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 H 0.186 0.814 4 C 0.292 3.708 5 O -0.426 6.426 6 N -0.271 5.271 7 C -0.042 4.042 8 C -0.114 4.114 9 C -0.134 4.134 10 C -0.097 4.097 11 C -0.154 4.154 12 C -0.128 4.128 13 C -0.187 4.187 14 C 0.016 3.984 15 N -0.072 5.072 16 C -0.153 4.153 17 C -0.175 4.175 18 C 0.108 3.892 19 N -0.385 5.385 20 C -0.375 4.375 21 H 0.107 0.893 22 C -0.275 4.275 23 N -0.628 5.628 24 Si 0.812 3.188 25 H -0.209 1.209 26 H -0.225 1.225 27 H -0.187 1.187 28 N -0.156 5.156 29 N -0.087 5.087 30 H 0.151 0.849 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.148 0.852 40 H 0.113 0.887 41 H 0.231 0.769 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.198 0.802 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.453 26.139 -20.746 35.282 hybrid contribution 0.111 -2.434 0.201 2.445 sum -11.342 23.705 -20.545 33.356 Atomic orbital electron populations 1.22309 0.85639 1.05642 1.07850 1.21916 1.00244 0.97734 0.77250 0.81370 1.21038 0.78185 0.86768 0.84843 1.90858 1.49225 1.17849 1.84684 1.45920 1.57406 1.15882 1.07861 1.22906 1.03743 0.78388 0.99166 1.21254 1.03103 0.94225 0.92824 1.20503 1.03166 0.96507 0.93180 1.20847 0.96287 0.96987 0.95582 1.21435 1.00787 0.93417 0.99752 1.21145 0.98699 1.00858 0.92134 1.20975 1.03074 0.95879 0.98745 1.18633 0.98047 0.94603 0.87107 1.47166 1.17117 1.22219 1.20695 1.23550 1.03845 0.92547 0.95383 1.22287 0.94355 1.00014 1.00805 1.19003 0.95942 0.81687 0.92542 1.42576 1.55586 1.09984 1.30313 1.19749 1.22312 0.90069 1.05359 0.89322 1.25764 1.00045 1.02193 0.99470 1.69909 1.34965 1.30595 1.27284 0.84980 0.76414 0.78834 0.78539 1.20928 1.22547 1.18750 1.74981 1.21717 1.04731 1.14141 1.78112 1.04691 1.22575 1.03293 0.84906 0.91254 0.87546 0.87229 0.85819 0.86708 0.85944 0.81847 0.82741 0.85179 0.88734 0.76886 0.94668 0.91814 0.80238 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.69 71.98 0.63 -0.83 16 2 C 0.13 2.49 3.07 44.25 0.14 2.63 16 3 H 0.17 1.90 7.28 -2.39 -0.02 1.88 16 4 C 0.50 13.17 7.00 87.66 0.61 13.79 16 5 O -0.55 -21.65 14.55 -3.07 -0.04 -21.70 16 6 N -0.55 -10.66 3.13 -629.48 -1.97 -12.63 16 7 C 0.08 0.46 6.47 86.62 0.56 1.02 16 8 C -0.08 -0.37 6.94 30.26 0.21 -0.16 16 9 C -0.13 -1.92 6.23 -19.64 -0.12 -2.05 16 10 C -0.08 -0.99 10.03 22.25 0.22 -0.77 16 11 C -0.14 -2.13 10.06 22.28 0.22 -1.91 16 12 C -0.11 -2.52 10.02 22.19 0.22 -2.30 16 13 C -0.17 -4.90 9.46 22.51 0.21 -4.68 16 14 C 0.11 2.60 6.62 38.28 0.25 2.85 16 15 N -0.28 -8.55 2.96 -330.73 -0.98 -9.53 16 16 C 0.00 -0.06 10.33 83.49 0.86 0.80 16 17 C -0.04 -1.55 6.61 41.60 0.28 -1.28 16 18 C 0.24 10.71 6.82 85.64 0.58 11.30 16 19 N -0.74 -42.61 5.59 -347.17 -1.94 -44.55 16 20 C -0.24 -14.56 9.99 84.03 0.84 -13.72 16 21 H 0.09 4.90 7.83 -2.91 -0.02 4.87 16 22 C -0.08 -5.14 5.50 84.86 0.47 -4.67 16 23 N -0.98 -65.58 13.06 21.65 0.28 -65.29 16 24 Si 0.98 48.81 29.55 68.60 2.03 50.84 16 25 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 26 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 27 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 28 N -0.29 -12.98 12.41 -48.60 -0.60 -13.59 16 29 N -0.11 -4.18 13.17 37.02 0.49 -3.70 16 30 H 0.13 0.13 6.95 -2.38 -0.02 0.11 16 31 H 0.07 0.88 7.46 -2.39 -0.02 0.86 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.22 7.72 -2.39 -0.02 0.20 16 34 H 0.12 -0.13 6.97 -2.39 -0.02 -0.15 16 35 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 38 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.09 3.59 6.30 -2.91 -0.02 3.57 16 41 H 0.21 5.78 7.46 -2.91 -0.02 5.76 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.37 23.55 7.66 -92.71 -0.71 22.84 16 45 H 0.25 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -97.21 378.40 3.77 -93.44 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.32 Total: 26.68 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 6.19 Total: 0.02 kcal Atomic # 7 Polarization: -144.56 SS G_CDS: -4.72 Total: -149.28 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.04 Total: -21.70 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -97.21 3.77 -93.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603173559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.716 kcal (2) G-P(sol) polarization free energy of solvation -97.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds