Wall clock time and date at job start Wed Apr 1 2020 00:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46951 * 2 1 4 4 C 1.50708 * 109.46752 * 119.99542 * 2 1 3 5 5 O 1.21289 * 119.99640 * 89.03778 * 4 2 1 6 6 N 1.34776 * 119.99812 * 269.03090 * 4 2 1 7 7 C 1.46535 * 124.97825 * 5.25084 * 6 4 2 8 8 C 1.53747 * 105.19658 * 179.97438 * 7 6 4 9 9 C 1.51223 * 104.58073 * 0.02562 * 8 7 6 10 10 C 1.38180 * 130.97307 * 179.97438 * 9 8 7 11 11 C 1.38231 * 120.14718 * 179.16077 * 10 9 8 12 12 C 1.38296 * 119.82681 * 0.79168 * 11 10 9 13 13 C 1.37841 * 120.22455 * 359.47870 * 12 11 10 14 14 C 1.38557 * 108.55908 * 359.73562 * 9 8 7 15 15 N 1.46498 * 109.47339 * 239.99369 * 2 1 3 16 16 C 1.35318 * 125.86948 * 325.01896 * 15 2 1 17 17 C 1.35343 * 106.17562 * 179.97438 * 16 15 2 18 18 C 1.50700 * 126.75161 * 180.26051 * 17 16 15 19 19 N 1.46506 * 109.46868 * 94.71079 * 18 17 16 20 20 C 1.36943 * 119.99637 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00254 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99594 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99659 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46818 * 89.99928 * 24 22 20 26 26 H 1.48499 * 109.47207 * 209.99594 * 24 22 20 27 27 H 1.48496 * 109.47239 * 329.99865 * 24 22 20 28 28 N 1.33775 * 106.50062 * 0.02562 * 17 16 15 29 29 N 1.28636 * 108.88184 * 0.02562 * 28 17 16 30 30 H 1.09007 * 109.46801 * 184.35843 * 1 2 3 31 31 H 1.08994 * 109.47285 * 304.35632 * 1 2 3 32 32 H 1.08999 * 109.47241 * 64.35916 * 1 2 3 33 33 H 1.08991 * 110.29790 * 298.92636 * 7 6 4 34 34 H 1.09003 * 110.29961 * 60.97543 * 7 6 4 35 35 H 1.08995 * 110.41847 * 118.77214 * 8 7 6 36 36 H 1.09000 * 110.41458 * 241.22820 * 8 7 6 37 37 H 1.07999 * 119.92817 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.08967 * 180.27180 * 11 10 9 39 39 H 1.08007 * 119.88770 * 179.49915 * 12 11 10 40 40 H 1.07999 * 119.86132 * 180.02562 * 13 12 11 41 41 H 1.07997 * 126.91082 * 359.96458 * 16 15 2 42 42 H 1.08998 * 109.47482 * 214.71243 * 18 17 16 43 43 H 1.09000 * 109.46977 * 334.71430 * 18 17 16 44 44 H 0.96993 * 120.00051 * 0.02562 * 19 18 17 45 45 H 0.96999 * 119.99852 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.2177 -1.9087 1.2058 6 7 2.2755 -0.0139 2.3586 7 6 1.9879 1.4108 2.5446 8 6 2.4387 1.7289 3.9797 9 6 2.9650 0.4155 4.5134 10 6 3.5024 0.0874 5.7434 11 6 3.9038 -1.2099 6.0019 12 6 3.7814 -2.1763 5.0202 13 6 3.2511 -1.8524 3.7899 14 6 2.8340 -0.5465 3.5247 15 7 2.0184 -0.6907 -1.1961 16 6 1.4357 -1.7587 -1.7884 17 6 2.2125 -2.0705 -2.8519 18 6 1.9846 -3.1864 -3.8388 19 7 1.2642 -2.6679 -5.0044 20 6 0.9430 -3.5056 -6.0390 21 1 1.2211 -4.5483 -5.9959 22 6 0.2609 -3.0143 -7.1436 23 7 -0.0768 -1.7432 -7.1968 24 14 -0.1766 -4.1568 -8.5553 25 1 -1.5118 -4.7586 -8.3094 26 1 -0.2071 -3.3863 -9.8244 27 1 0.8411 -5.2336 -8.6542 28 7 3.2195 -1.1899 -2.8580 29 7 3.0761 -0.3865 -1.8636 30 1 -0.3633 -1.0248 0.0781 31 1 -0.3633 0.5799 0.8483 32 1 -0.3634 0.4447 -0.9265 33 1 2.5538 2.0073 1.8293 34 1 0.9201 1.5989 2.4321 35 1 3.2287 2.4798 3.9726 36 1 1.5933 2.0708 4.5768 37 1 3.5962 0.8430 6.5093 38 1 4.3196 -1.4663 6.9651 39 1 4.1022 -3.1884 5.2184 40 1 3.1578 -2.6118 3.0277 41 1 0.5325 -2.2614 -1.4753 42 1 2.9450 -3.5924 -4.1563 43 1 1.3953 -3.9731 -3.3678 44 1 1.0147 -1.7314 -5.0432 45 1 -0.5537 -1.4000 -7.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603173560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:12 Heat of formation + Delta-G solvation = 125.650263 kcal Electronic energy + Delta-G solvation = -28668.449487 eV Core-core repulsion = 24689.278498 eV Total energy + Delta-G solvation = -3979.170989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.06426 -41.64774 -39.32015 -36.89645 -35.68475 -34.59761 -32.88735 -31.98518 -31.11333 -30.04052 -29.84717 -29.52218 -26.23380 -25.42146 -24.00291 -23.69293 -22.76893 -22.05951 -21.52715 -20.81634 -19.85671 -18.09581 -17.59961 -17.09704 -16.84632 -16.65595 -16.09975 -15.91876 -15.17142 -14.91325 -14.72702 -14.50204 -14.38614 -14.06175 -13.65528 -13.49953 -13.31802 -13.20655 -13.08084 -12.92653 -12.85851 -12.61565 -12.46185 -12.37900 -12.07901 -11.81741 -11.42261 -11.23605 -10.89260 -10.77614 -10.74496 -10.60970 -10.42714 -10.05462 -9.81889 -9.67764 -9.20808 -8.84270 -8.77472 -8.28734 -6.87305 -5.70254 -2.99398 0.78594 0.97673 1.57022 1.92675 2.11085 2.54369 2.95853 3.38085 3.48454 3.49608 3.53522 3.55837 3.89639 3.98015 4.06551 4.22182 4.39995 4.56862 4.65417 4.66120 4.73318 4.76510 4.84447 4.96083 5.02756 5.05754 5.16455 5.22237 5.24993 5.33117 5.45008 5.55634 5.58701 5.67677 5.74660 5.84115 5.97872 6.01651 6.17669 6.22304 6.45047 6.58851 6.67453 6.72622 6.75681 6.83615 7.35365 7.75415 8.47195 8.84399 9.58990 10.14885 10.51402 11.52624 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.002088 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.298698 B =13406.398025 C =13907.226600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.132 0.868 4 C 0.517 3.483 5 O -0.490 6.490 6 N -0.551 5.551 7 C 0.092 3.908 8 C -0.084 4.084 9 C -0.137 4.137 10 C -0.080 4.080 11 C -0.139 4.139 12 C -0.093 4.093 13 C -0.129 4.129 14 C 0.145 3.855 15 N -0.293 5.293 16 C -0.018 4.018 17 C -0.006 4.006 18 C 0.233 3.767 19 N -0.726 5.726 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 N -0.244 5.244 29 N -0.098 5.098 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.187 0.813 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.385 0.615 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 9.432 31.954 33.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.150 0.850 4 C 0.304 3.696 5 O -0.362 6.362 6 N -0.275 5.275 7 C -0.030 4.030 8 C -0.121 4.121 9 C -0.139 4.139 10 C -0.099 4.099 11 C -0.158 4.158 12 C -0.112 4.112 13 C -0.149 4.149 14 C 0.050 3.950 15 N -0.088 5.088 16 C -0.168 4.168 17 C -0.143 4.143 18 C 0.104 3.896 19 N -0.370 5.370 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.741 3.259 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 N -0.112 5.112 29 N -0.076 5.076 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.527 9.570 31.531 33.140 hybrid contribution -1.293 -0.807 -0.609 1.641 sum 2.235 8.763 30.923 32.218 Atomic orbital electron populations 1.22176 0.88971 1.05402 1.05464 1.21270 0.97828 0.97391 0.80324 0.85000 1.20550 0.78054 0.87535 0.83455 1.90777 1.48808 1.13853 1.82728 1.45790 1.59315 1.11116 1.11315 1.22351 1.02329 0.79743 0.98598 1.21086 1.01883 0.95538 0.93588 1.19993 1.04414 0.94992 0.94542 1.20370 0.97953 0.96679 0.94899 1.21069 1.02128 0.92923 0.99712 1.20985 0.97941 0.99810 0.92447 1.21010 1.00798 0.94608 0.98491 1.18336 0.96681 0.94175 0.85767 1.46795 1.18994 1.22727 1.20236 1.23265 1.02996 0.93167 0.97395 1.22426 0.93220 1.00546 0.98136 1.18951 0.96303 0.89009 0.85343 1.42310 1.67334 1.10431 1.16975 1.19246 1.29604 0.92144 0.95835 0.90874 1.24757 1.01521 0.96169 0.98612 1.69683 1.45194 1.12504 1.30771 0.86148 0.78174 0.79611 0.82010 1.21775 1.21831 1.20678 1.75067 1.21418 1.03048 1.11692 1.78271 1.03776 1.22182 1.03404 0.89951 0.89166 0.88792 0.89167 0.89225 0.88745 0.88751 0.85608 0.85497 0.85318 0.84364 0.79588 0.94242 0.94360 0.78128 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.72 37.16 0.32 -0.87 16 2 C 0.14 1.43 3.18 -69.08 -0.22 1.21 16 3 H 0.13 1.02 7.03 -51.93 -0.36 0.65 16 4 C 0.52 6.06 6.95 -10.98 -0.08 5.98 16 5 O -0.49 -7.60 14.62 5.55 0.08 -7.51 16 6 N -0.55 -5.12 3.13 -112.89 -0.35 -5.48 16 7 C 0.09 0.44 6.41 -3.63 -0.02 0.42 16 8 C -0.08 -0.36 6.94 -27.24 -0.19 -0.55 16 9 C -0.14 -1.04 6.23 -104.27 -0.65 -1.69 16 10 C -0.08 -0.54 10.04 -39.61 -0.40 -0.94 16 11 C -0.14 -0.98 10.06 -39.56 -0.40 -1.37 16 12 C -0.09 -0.80 10.02 -39.70 -0.40 -1.20 16 13 C -0.13 -1.42 9.46 -39.21 -0.37 -1.79 16 14 C 0.14 1.48 6.62 -83.57 -0.55 0.93 16 15 N -0.29 -4.55 3.02 -55.89 -0.17 -4.72 16 16 C -0.02 -0.31 10.30 -17.05 -0.18 -0.48 16 17 C -0.01 -0.13 6.61 -82.78 -0.55 -0.68 16 18 C 0.23 5.18 6.82 -5.19 -0.04 5.14 16 19 N -0.73 -19.49 5.60 -61.08 -0.34 -19.83 16 20 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 21 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 24 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 N -0.24 -5.28 12.41 33.29 0.41 -4.87 16 29 N -0.10 -1.85 13.17 60.35 0.79 -1.06 16 30 H 0.08 0.67 7.40 -51.92 -0.38 0.28 16 31 H 0.09 0.37 7.69 -51.93 -0.40 -0.03 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.32 7.67 -51.93 -0.40 -0.08 16 34 H 0.09 0.22 7.69 -51.93 -0.40 -0.18 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.14 1.79 6.30 -52.49 -0.33 1.46 16 41 H 0.19 2.61 7.43 -52.49 -0.39 2.22 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.39 11.05 7.66 -40.82 -0.31 10.74 16 45 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -38.37 379.59 -8.02 -46.39 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.91 Total: 5.20 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.96 Total: -3.39 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: 1.07 Total: -64.23 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.37 -8.02 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603173560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.039 kcal (2) G-P(sol) polarization free energy of solvation -38.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds