Wall clock time and date at job start Wed Apr 1 2020 00:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46951 * 2 1 4 4 C 1.50708 * 109.46752 * 119.99542 * 2 1 3 5 5 O 1.21289 * 119.99640 * 89.03778 * 4 2 1 6 6 N 1.34776 * 119.99812 * 269.03090 * 4 2 1 7 7 C 1.46535 * 124.97825 * 5.25084 * 6 4 2 8 8 C 1.53747 * 105.19658 * 179.97438 * 7 6 4 9 9 C 1.51223 * 104.58073 * 0.02562 * 8 7 6 10 10 C 1.38180 * 130.97307 * 179.97438 * 9 8 7 11 11 C 1.38231 * 120.14718 * 179.16077 * 10 9 8 12 12 C 1.38296 * 119.82681 * 0.79168 * 11 10 9 13 13 C 1.37841 * 120.22455 * 359.47870 * 12 11 10 14 14 C 1.38557 * 108.55908 * 359.73562 * 9 8 7 15 15 N 1.46498 * 109.47339 * 239.99369 * 2 1 3 16 16 C 1.35318 * 125.86948 * 325.01896 * 15 2 1 17 17 C 1.35343 * 106.17562 * 179.97438 * 16 15 2 18 18 C 1.50700 * 126.75161 * 180.26051 * 17 16 15 19 19 N 1.46506 * 109.46868 * 94.71079 * 18 17 16 20 20 C 1.36943 * 119.99637 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00254 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99594 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99659 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46818 * 89.99928 * 24 22 20 26 26 H 1.48499 * 109.47207 * 209.99594 * 24 22 20 27 27 H 1.48496 * 109.47239 * 329.99865 * 24 22 20 28 28 N 1.33775 * 106.50062 * 0.02562 * 17 16 15 29 29 N 1.28636 * 108.88184 * 0.02562 * 28 17 16 30 30 H 1.09007 * 109.46801 * 184.35843 * 1 2 3 31 31 H 1.08994 * 109.47285 * 304.35632 * 1 2 3 32 32 H 1.08999 * 109.47241 * 64.35916 * 1 2 3 33 33 H 1.08991 * 110.29790 * 298.92636 * 7 6 4 34 34 H 1.09003 * 110.29961 * 60.97543 * 7 6 4 35 35 H 1.08995 * 110.41847 * 118.77214 * 8 7 6 36 36 H 1.09000 * 110.41458 * 241.22820 * 8 7 6 37 37 H 1.07999 * 119.92817 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.08967 * 180.27180 * 11 10 9 39 39 H 1.08007 * 119.88770 * 179.49915 * 12 11 10 40 40 H 1.07999 * 119.86132 * 180.02562 * 13 12 11 41 41 H 1.07997 * 126.91082 * 359.96458 * 16 15 2 42 42 H 1.08998 * 109.47482 * 214.71243 * 18 17 16 43 43 H 1.09000 * 109.46977 * 334.71430 * 18 17 16 44 44 H 0.96993 * 120.00051 * 0.02562 * 19 18 17 45 45 H 0.96999 * 119.99852 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.2177 -1.9087 1.2058 6 7 2.2755 -0.0139 2.3586 7 6 1.9879 1.4108 2.5446 8 6 2.4387 1.7289 3.9797 9 6 2.9650 0.4155 4.5134 10 6 3.5024 0.0874 5.7434 11 6 3.9038 -1.2099 6.0019 12 6 3.7814 -2.1763 5.0202 13 6 3.2511 -1.8524 3.7899 14 6 2.8340 -0.5465 3.5247 15 7 2.0184 -0.6907 -1.1961 16 6 1.4357 -1.7587 -1.7884 17 6 2.2125 -2.0705 -2.8519 18 6 1.9846 -3.1864 -3.8388 19 7 1.2642 -2.6679 -5.0044 20 6 0.9430 -3.5056 -6.0390 21 1 1.2211 -4.5483 -5.9959 22 6 0.2609 -3.0143 -7.1436 23 7 -0.0768 -1.7432 -7.1968 24 14 -0.1766 -4.1568 -8.5553 25 1 -1.5118 -4.7586 -8.3094 26 1 -0.2071 -3.3863 -9.8244 27 1 0.8411 -5.2336 -8.6542 28 7 3.2195 -1.1899 -2.8580 29 7 3.0761 -0.3865 -1.8636 30 1 -0.3633 -1.0248 0.0781 31 1 -0.3633 0.5799 0.8483 32 1 -0.3634 0.4447 -0.9265 33 1 2.5538 2.0073 1.8293 34 1 0.9201 1.5989 2.4321 35 1 3.2287 2.4798 3.9726 36 1 1.5933 2.0708 4.5768 37 1 3.5962 0.8430 6.5093 38 1 4.3196 -1.4663 6.9651 39 1 4.1022 -3.1884 5.2184 40 1 3.1578 -2.6118 3.0277 41 1 0.5325 -2.2614 -1.4753 42 1 2.9450 -3.5924 -4.1563 43 1 1.3953 -3.9731 -3.3678 44 1 1.0147 -1.7314 -5.0432 45 1 -0.5537 -1.4000 -7.9685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603173560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:11 Heat of formation + Delta-G solvation = 99.031119 kcal Electronic energy + Delta-G solvation = -28669.603780 eV Core-core repulsion = 24689.278498 eV Total energy + Delta-G solvation = -3980.325282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.43261 -42.33371 -40.10650 -37.52180 -37.07471 -36.24571 -33.84319 -33.47476 -32.17856 -31.70470 -30.69898 -30.01502 -27.83690 -26.49236 -24.88756 -24.76601 -24.20347 -22.92160 -22.41106 -22.17919 -20.78646 -19.36639 -18.87848 -18.41047 -17.64840 -17.41943 -16.98525 -16.68756 -16.58435 -16.04433 -15.95037 -15.60927 -15.49745 -15.17243 -15.05582 -14.70558 -14.48254 -14.02572 -13.88582 -13.77416 -13.69873 -13.44794 -13.36373 -13.12143 -12.96712 -12.86923 -12.78233 -12.63103 -12.53581 -12.10870 -12.06817 -11.95481 -11.86702 -11.64033 -11.30735 -10.97482 -10.92276 -10.27407 -9.80367 -9.03575 -8.91370 -7.93656 -5.24460 0.09200 0.35862 0.39077 0.92467 1.31681 1.38860 1.50121 1.52268 1.61170 1.64819 2.58965 2.77938 2.80790 3.12326 3.36159 3.45724 3.49262 3.50949 3.59923 3.89206 4.04908 4.08236 4.08734 4.14852 4.19943 4.28818 4.35852 4.38289 4.44713 4.51448 4.56880 4.59260 4.78672 4.89315 4.94218 5.00283 5.05757 5.08686 5.10220 5.16746 5.35814 5.43217 5.49152 5.50333 5.56210 6.00335 6.04110 6.25730 6.56016 7.32731 7.38182 8.02079 8.30122 9.30167 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.002088 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.298698 B =13406.398025 C =13907.226600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 H 0.163 0.837 4 C 0.513 3.487 5 O -0.543 6.543 6 N -0.546 5.546 7 C 0.077 3.923 8 C -0.079 4.079 9 C -0.133 4.133 10 C -0.081 4.081 11 C -0.136 4.136 12 C -0.107 4.107 13 C -0.161 4.161 14 C 0.110 3.890 15 N -0.279 5.279 16 C -0.001 4.001 17 C -0.036 4.036 18 C 0.237 3.763 19 N -0.737 5.737 20 C -0.246 4.246 21 H 0.083 0.917 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.981 3.019 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.269 1.269 28 N -0.287 5.287 29 N -0.108 5.108 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.214 0.786 42 H 0.030 0.970 43 H 0.059 0.941 44 H 0.372 0.628 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 11.209 34.532 36.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.181 0.819 4 C 0.301 3.699 5 O -0.419 6.419 6 N -0.270 5.270 7 C -0.043 4.043 8 C -0.115 4.115 9 C -0.136 4.136 10 C -0.099 4.099 11 C -0.155 4.155 12 C -0.125 4.125 13 C -0.181 4.181 14 C 0.016 3.984 15 N -0.073 5.073 16 C -0.152 4.152 17 C -0.174 4.174 18 C 0.109 3.891 19 N -0.379 5.379 20 C -0.377 4.377 21 H 0.100 0.900 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.809 3.191 25 H -0.209 1.209 26 H -0.223 1.223 27 H -0.194 1.194 28 N -0.155 5.155 29 N -0.086 5.086 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.231 0.769 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.204 0.796 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.544 11.379 34.185 36.119 hybrid contribution -0.923 -1.305 -1.147 1.967 sum 1.621 10.074 33.038 34.578 Atomic orbital electron populations 1.22280 0.86328 1.05736 1.07297 1.21869 0.99827 0.97877 0.77706 0.81939 1.20731 0.77779 0.87047 0.84379 1.90763 1.51442 1.16045 1.83677 1.45900 1.58063 1.12704 1.10310 1.22855 1.04733 0.77108 0.99605 1.21237 1.03250 0.93963 0.93093 1.20466 1.03168 0.95922 0.93997 1.20827 0.96622 0.97194 0.95296 1.21444 1.01059 0.92817 1.00144 1.21171 0.98162 1.00994 0.92189 1.20985 1.03207 0.94991 0.98942 1.18643 0.98166 0.94539 0.87071 1.47164 1.17507 1.21942 1.20697 1.23547 1.02897 0.92855 0.95934 1.22252 0.94591 1.01081 0.99464 1.18932 0.95419 0.90138 0.84597 1.42472 1.67731 1.09672 1.18074 1.19688 1.28827 0.92806 0.96385 0.89951 1.25657 1.02054 0.97782 1.01414 1.69854 1.46404 1.14432 1.31449 0.85032 0.78232 0.77681 0.78127 1.20888 1.22320 1.19414 1.74989 1.22815 1.04224 1.13441 1.78124 1.05020 1.22045 1.03408 0.90825 0.84983 0.88768 0.87638 0.86100 0.86957 0.86170 0.82308 0.82817 0.84532 0.87752 0.76903 0.95256 0.92375 0.79642 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.72 71.98 0.63 -1.30 16 2 C 0.13 2.51 3.18 44.25 0.14 2.65 16 3 H 0.16 2.04 7.03 -2.39 -0.02 2.03 16 4 C 0.51 11.86 6.95 87.66 0.61 12.47 16 5 O -0.54 -17.76 14.62 -3.06 -0.04 -17.81 16 6 N -0.55 -9.47 3.13 -629.47 -1.97 -11.44 16 7 C 0.08 0.46 6.41 86.62 0.56 1.01 16 8 C -0.08 -0.35 6.94 30.27 0.21 -0.14 16 9 C -0.13 -1.69 6.23 -19.64 -0.12 -1.81 16 10 C -0.08 -0.84 10.04 22.25 0.22 -0.62 16 11 C -0.14 -1.65 10.06 22.28 0.22 -1.43 16 12 C -0.11 -1.87 10.02 22.19 0.22 -1.65 16 13 C -0.16 -3.81 9.46 22.51 0.21 -3.60 16 14 C 0.11 2.21 6.62 38.28 0.25 2.46 16 15 N -0.28 -8.59 3.02 -330.74 -1.00 -9.59 16 16 C 0.00 -0.03 10.30 83.49 0.86 0.83 16 17 C -0.04 -1.52 6.61 41.59 0.28 -1.25 16 18 C 0.24 10.81 6.82 85.63 0.58 11.39 16 19 N -0.74 -40.43 5.60 -347.16 -1.94 -42.37 16 20 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 21 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 22 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 23 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 24 Si 0.98 47.28 29.55 68.60 2.03 49.30 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 N -0.29 -12.87 12.41 -48.60 -0.60 -13.47 16 29 N -0.11 -4.12 13.17 37.02 0.49 -3.64 16 30 H 0.07 1.06 7.40 -2.38 -0.02 1.05 16 31 H 0.13 0.50 7.69 -2.39 -0.02 0.48 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 0.33 7.67 -2.39 -0.02 0.31 16 34 H 0.12 -0.03 7.69 -2.39 -0.02 -0.05 16 35 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 38 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.10 3.11 6.30 -2.91 -0.02 3.09 16 41 H 0.21 5.83 7.43 -2.91 -0.02 5.81 16 42 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.37 22.04 7.66 -92.71 -0.71 21.33 16 45 H 0.25 15.31 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -88.55 379.59 3.74 -84.81 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.32 Total: 23.83 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 6.18 Total: 1.49 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -4.74 Total: -141.63 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.04 Total: -17.81 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -88.55 3.74 -84.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603173560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.840 kcal (2) G-P(sol) polarization free energy of solvation -88.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds