Wall clock time and date at job start Wed Apr 1 2020 01:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47064 * 2 1 4 4 C 1.46497 * 119.99997 * 274.06921 * 3 2 1 5 5 C 1.50705 * 109.46820 * 281.14134 * 4 3 2 6 6 H 1.07995 * 119.99995 * 3.82230 * 5 4 3 7 7 C 1.37877 * 119.99648 * 183.81860 * 5 4 3 8 8 N 1.31513 * 120.00398 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46986 * 90.00232 * 9 7 5 11 11 H 1.48503 * 109.47062 * 210.00452 * 9 7 5 12 12 H 1.48504 * 109.46794 * 330.00339 * 9 7 5 13 13 S 1.65605 * 120.00110 * 94.06814 * 3 2 1 14 14 O 1.42104 * 106.40000 * 336.38407 * 13 3 2 15 15 O 1.42099 * 106.39973 * 203.46934 * 13 3 2 16 16 N 1.65594 * 107.21899 * 89.92642 * 13 3 2 17 17 C 1.46498 * 120.00357 * 65.62681 * 16 13 3 18 18 C 1.52994 * 109.47301 * 164.37354 * 17 16 13 19 19 C 1.52998 * 109.47381 * 300.00352 * 18 17 16 20 20 C 1.53003 * 109.47091 * 60.00628 * 18 17 16 21 21 C 1.50698 * 109.47176 * 180.02562 * 18 17 16 22 22 C 1.38652 * 120.79207 * 359.72298 * 21 18 17 23 23 C 1.38204 * 119.16610 * 179.79477 * 22 21 18 24 24 N 1.31866 * 120.75980 * 0.49018 * 23 22 21 25 25 C 1.31872 * 121.73098 * 359.73800 * 24 23 22 26 26 C 1.38202 * 120.75921 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47436 * 185.05543 * 1 2 3 28 28 H 1.09007 * 109.47672 * 305.05697 * 1 2 3 29 29 H 1.09004 * 109.47099 * 65.05615 * 1 2 3 30 30 H 1.08994 * 109.47383 * 240.00044 * 2 1 3 31 31 H 1.09005 * 109.46736 * 119.99608 * 2 1 3 32 32 H 1.09002 * 109.47345 * 41.13884 * 4 3 2 33 33 H 1.08997 * 109.47691 * 161.14210 * 4 3 2 34 34 H 0.96996 * 120.00013 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99912 * 245.63336 * 16 13 3 36 36 H 1.08996 * 109.47334 * 284.37932 * 17 16 13 37 37 H 1.09008 * 109.46692 * 44.37750 * 17 16 13 38 38 H 1.09001 * 109.47079 * 59.99965 * 19 18 17 39 39 H 1.09000 * 109.47238 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47305 * 299.99692 * 19 18 17 41 41 H 1.08996 * 109.47072 * 59.99711 * 20 18 17 42 42 H 1.09000 * 109.47209 * 179.97438 * 20 18 17 43 43 H 1.09001 * 109.46905 * 299.99751 * 20 18 17 44 44 H 1.08002 * 120.41276 * 0.02562 * 22 21 18 45 45 H 1.08000 * 119.61783 * 180.20250 * 23 22 21 46 46 H 1.07995 * 119.61787 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.41534 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1776 2.1018 -1.2655 5 6 3.4548 1.6645 -1.9353 6 1 4.0534 0.8799 -1.4965 7 6 3.8590 2.2659 -3.1082 8 7 3.1304 3.2216 -3.6423 9 14 5.4426 1.7243 -3.9381 10 1 5.1501 0.6255 -4.8932 11 1 6.0354 2.8722 -4.6704 12 1 6.4011 1.2447 -2.9101 13 16 2.3902 2.1280 1.4305 14 8 1.6480 1.4559 2.4389 15 8 2.2889 3.5252 1.1920 16 7 3.9873 1.8215 1.7428 17 6 5.0236 2.3654 0.8616 18 6 6.3826 2.2801 1.5592 19 6 6.3411 3.0887 2.8574 20 6 6.7009 0.8181 1.8788 21 6 7.4484 2.8402 0.6529 22 6 7.1269 3.3257 -0.6054 23 6 8.1305 3.8357 -1.4072 24 7 9.3817 3.8549 -0.9913 25 6 9.7247 3.3976 0.1970 26 6 8.7747 2.8771 1.0553 27 1 -0.3634 -1.0237 0.0906 28 1 -0.3635 0.5903 0.8412 29 1 -0.3633 0.4334 -0.9318 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3320 1.8826 -1.9174 33 1 2.2180 3.1735 -1.0709 34 1 3.4150 3.6449 -4.4673 35 1 4.2368 1.2817 2.5092 36 1 5.0531 1.7894 -0.0633 37 1 4.7968 3.4070 0.6338 38 1 5.5702 2.6840 3.5130 39 1 7.3092 3.0276 3.3545 40 1 6.1144 4.1303 2.6296 41 1 6.7305 0.2421 0.9539 42 1 7.6693 0.7573 2.3754 43 1 5.9300 0.4134 2.5345 44 1 6.1046 3.3088 -0.9532 45 1 7.8878 4.2188 -2.3873 46 1 10.7599 3.4302 0.5031 47 1 9.0617 2.5045 2.0275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619712825.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:41 Heat of formation + Delta-G solvation = -53.284336 kcal Electronic energy + Delta-G solvation = -29876.523129 eV Core-core repulsion = 25992.744153 eV Total energy + Delta-G solvation = -3883.778975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38558 -37.64271 -36.65291 -36.05743 -35.22924 -33.37570 -32.78485 -31.18948 -30.54213 -29.96261 -27.30065 -26.73390 -26.09948 -23.47492 -23.20779 -22.83943 -21.73349 -19.50566 -18.98436 -17.41087 -16.88402 -16.58877 -16.39436 -16.13216 -15.52307 -15.33187 -14.93054 -14.58474 -14.33596 -13.91105 -13.87705 -13.56919 -13.42504 -13.35557 -13.21569 -12.91238 -12.52279 -12.10010 -12.06092 -11.92775 -11.84679 -11.70775 -11.61031 -11.44400 -11.35102 -11.20282 -11.17139 -11.11468 -10.98236 -10.56988 -10.52381 -10.39264 -10.06977 -9.85098 -9.40295 -9.32219 -9.04763 -8.93109 -8.58502 -8.10001 -6.19187 -4.26280 1.27641 1.28089 1.39083 3.16760 3.26402 3.28006 3.51548 3.94837 4.13181 4.27027 4.50737 4.59241 4.60027 4.98684 5.04918 5.12511 5.14785 5.16440 5.22924 5.38306 5.40506 5.57010 5.66009 5.73025 5.75690 5.76170 5.80100 5.84321 5.93580 6.00812 6.03403 6.07273 6.12517 6.23602 6.30326 6.35499 6.44115 6.54009 6.64561 6.68078 6.86213 7.25115 7.33552 7.41218 7.63574 7.78225 8.08538 8.10539 8.78665 9.39221 10.88255 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.005810 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.010151 B = 4818.070445 C = 6739.715822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.541 4.541 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.877 3.123 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.267 1.267 13 S 2.785 3.215 14 O -1.001 7.001 15 O -0.980 6.980 16 N -1.128 6.128 17 C 0.123 3.877 18 C -0.034 4.034 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.023 4.023 22 C -0.163 4.163 23 C 0.100 3.900 24 N -0.492 5.492 25 C 0.090 3.910 26 C -0.170 4.170 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.150 0.850 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -4.230 10.076 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.704 3.296 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.192 1.192 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.964 6.964 16 N -0.888 5.888 17 C -0.003 4.003 18 C -0.035 4.035 19 C -0.195 4.195 20 C -0.195 4.195 21 C -0.032 4.032 22 C -0.183 4.183 23 C -0.056 4.056 24 N -0.201 5.201 25 C -0.067 4.067 26 C -0.190 4.190 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.170 0.830 45 H 0.171 0.829 46 H 0.168 0.832 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.209 -3.100 9.728 12.498 hybrid contribution 0.601 -1.118 -0.109 1.274 sum 7.810 -4.218 9.620 13.089 Atomic orbital electron populations 1.22203 0.97014 1.01309 1.02332 1.20951 0.93561 0.82874 1.02098 1.57712 1.78739 1.23021 1.23849 1.19213 0.97184 0.92562 0.78993 1.21513 1.07668 1.20624 1.08179 0.91775 1.24913 0.96931 0.94753 0.96905 1.69923 1.38063 1.24138 1.19977 0.86847 0.83825 0.78702 0.80261 1.20661 1.20726 1.19177 1.01727 0.72609 0.73714 0.72662 1.93547 1.69752 1.76533 1.58690 1.93576 1.85948 1.31230 1.85614 1.56013 1.25455 1.68266 1.39025 1.21636 0.85026 1.00557 0.93116 1.19728 0.92942 0.96109 0.94734 1.21880 1.01764 1.00314 0.95542 1.21871 1.01348 0.94060 1.02173 1.20117 0.94105 0.94853 0.94116 1.22497 1.02739 0.98675 0.94362 1.22789 0.87851 0.95313 0.99643 1.67647 1.20420 1.15988 1.16061 1.22645 0.99568 0.94787 0.89679 1.21883 0.93294 1.02461 1.01347 0.92417 0.92699 0.92157 0.90092 0.92051 0.94788 0.92732 0.92461 0.76152 0.88568 0.90042 0.91783 0.92461 0.92024 0.91869 0.92362 0.91891 0.82990 0.82867 0.83228 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.13 2.19 6.01 -4.04 -0.02 2.17 16 3 N -0.99 -19.23 2.85 -115.66 -0.33 -19.56 16 4 C 0.24 5.62 5.48 -5.19 -0.03 5.59 16 5 C -0.54 -12.81 7.92 -34.44 -0.27 -13.08 16 6 H 0.06 1.46 6.79 -52.49 -0.36 1.10 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.88 -23.67 13.29 55.43 0.74 -22.93 16 9 Si 0.88 19.20 29.54 -169.99 -5.02 14.18 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 S 2.79 52.37 6.11 -107.50 -0.66 51.72 16 14 O -1.00 -19.55 17.09 -57.17 -0.98 -20.53 16 15 O -0.98 -21.87 16.09 -57.17 -0.92 -22.79 16 16 N -1.13 -17.05 5.38 -10.62 -0.06 -17.11 16 17 C 0.12 1.93 3.74 -4.05 -0.02 1.92 16 18 C -0.03 -0.43 0.63 -155.66 -0.10 -0.52 16 19 C -0.14 -1.54 8.13 37.16 0.30 -1.24 16 20 C -0.14 -1.49 8.13 37.16 0.30 -1.19 16 21 C -0.02 -0.32 4.77 -104.32 -0.50 -0.82 16 22 C -0.16 -2.61 9.05 -39.44 -0.36 -2.97 16 23 C 0.10 1.60 11.18 -17.55 -0.20 1.40 16 24 N -0.49 -7.55 10.36 -13.26 -0.14 -7.69 16 25 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 26 C -0.17 -2.02 8.84 -39.44 -0.35 -2.37 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 31 H 0.06 0.91 7.65 -51.93 -0.40 0.51 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 1.41 6.83 -51.93 -0.35 1.05 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.40 4.97 6.49 -34.47 -0.22 4.75 16 36 H 0.10 1.69 5.04 -51.93 -0.26 1.43 16 37 H 0.08 1.43 7.15 -51.92 -0.37 1.06 16 38 H 0.06 0.67 7.21 -51.93 -0.37 0.29 16 39 H 0.06 0.53 7.48 -51.93 -0.39 0.14 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.53 7.48 -51.93 -0.39 0.14 16 43 H 0.06 0.61 6.59 -51.93 -0.34 0.26 16 44 H 0.15 2.66 6.07 -52.49 -0.32 2.34 16 45 H 0.15 2.30 8.06 -52.49 -0.42 1.87 16 46 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 47 H 0.13 1.18 7.28 -52.49 -0.38 0.80 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -30.25 386.11 -9.78 -40.03 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.09 Total: 9.63 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -1.15 Total: -10.78 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: 0.21 Total: -67.29 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.90 Total: -43.31 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.66 Total: 51.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.25 -9.78 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619712825.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.250 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds