Wall clock time and date at job start Wed Apr 1 2020 01:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47064 * 2 1 4 4 C 1.46497 * 119.99997 * 274.06921 * 3 2 1 5 5 C 1.50705 * 109.46820 * 281.14134 * 4 3 2 6 6 H 1.07995 * 119.99995 * 3.82230 * 5 4 3 7 7 C 1.37877 * 119.99648 * 183.81860 * 5 4 3 8 8 N 1.31513 * 120.00398 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46986 * 90.00232 * 9 7 5 11 11 H 1.48503 * 109.47062 * 210.00452 * 9 7 5 12 12 H 1.48504 * 109.46794 * 330.00339 * 9 7 5 13 13 S 1.65605 * 120.00110 * 94.06814 * 3 2 1 14 14 O 1.42104 * 106.40000 * 336.38407 * 13 3 2 15 15 O 1.42099 * 106.39973 * 203.46934 * 13 3 2 16 16 N 1.65594 * 107.21899 * 89.92642 * 13 3 2 17 17 C 1.46498 * 120.00357 * 65.62681 * 16 13 3 18 18 C 1.52994 * 109.47301 * 164.37354 * 17 16 13 19 19 C 1.52998 * 109.47381 * 300.00352 * 18 17 16 20 20 C 1.53003 * 109.47091 * 60.00628 * 18 17 16 21 21 C 1.50698 * 109.47176 * 180.02562 * 18 17 16 22 22 C 1.38652 * 120.79207 * 359.72298 * 21 18 17 23 23 C 1.38204 * 119.16610 * 179.79477 * 22 21 18 24 24 N 1.31866 * 120.75980 * 0.49018 * 23 22 21 25 25 C 1.31872 * 121.73098 * 359.73800 * 24 23 22 26 26 C 1.38202 * 120.75921 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47436 * 185.05543 * 1 2 3 28 28 H 1.09007 * 109.47672 * 305.05697 * 1 2 3 29 29 H 1.09004 * 109.47099 * 65.05615 * 1 2 3 30 30 H 1.08994 * 109.47383 * 240.00044 * 2 1 3 31 31 H 1.09005 * 109.46736 * 119.99608 * 2 1 3 32 32 H 1.09002 * 109.47345 * 41.13884 * 4 3 2 33 33 H 1.08997 * 109.47691 * 161.14210 * 4 3 2 34 34 H 0.96996 * 120.00013 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99912 * 245.63336 * 16 13 3 36 36 H 1.08996 * 109.47334 * 284.37932 * 17 16 13 37 37 H 1.09008 * 109.46692 * 44.37750 * 17 16 13 38 38 H 1.09001 * 109.47079 * 59.99965 * 19 18 17 39 39 H 1.09000 * 109.47238 * 179.97438 * 19 18 17 40 40 H 1.09000 * 109.47305 * 299.99692 * 19 18 17 41 41 H 1.08996 * 109.47072 * 59.99711 * 20 18 17 42 42 H 1.09000 * 109.47209 * 179.97438 * 20 18 17 43 43 H 1.09001 * 109.46905 * 299.99751 * 20 18 17 44 44 H 1.08002 * 120.41276 * 0.02562 * 22 21 18 45 45 H 1.08000 * 119.61783 * 180.20250 * 23 22 21 46 46 H 1.07995 * 119.61787 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.41534 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1776 2.1018 -1.2655 5 6 3.4548 1.6645 -1.9353 6 1 4.0534 0.8799 -1.4965 7 6 3.8590 2.2659 -3.1082 8 7 3.1304 3.2216 -3.6423 9 14 5.4426 1.7243 -3.9381 10 1 5.1501 0.6255 -4.8932 11 1 6.0354 2.8722 -4.6704 12 1 6.4011 1.2447 -2.9101 13 16 2.3902 2.1280 1.4305 14 8 1.6480 1.4559 2.4389 15 8 2.2889 3.5252 1.1920 16 7 3.9873 1.8215 1.7428 17 6 5.0236 2.3654 0.8616 18 6 6.3826 2.2801 1.5592 19 6 6.3411 3.0887 2.8574 20 6 6.7009 0.8181 1.8788 21 6 7.4484 2.8402 0.6529 22 6 7.1269 3.3257 -0.6054 23 6 8.1305 3.8357 -1.4072 24 7 9.3817 3.8549 -0.9913 25 6 9.7247 3.3976 0.1970 26 6 8.7747 2.8771 1.0553 27 1 -0.3634 -1.0237 0.0906 28 1 -0.3635 0.5903 0.8412 29 1 -0.3633 0.4334 -0.9318 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3320 1.8826 -1.9174 33 1 2.2180 3.1735 -1.0709 34 1 3.4150 3.6449 -4.4673 35 1 4.2368 1.2817 2.5092 36 1 5.0531 1.7894 -0.0633 37 1 4.7968 3.4070 0.6338 38 1 5.5702 2.6840 3.5130 39 1 7.3092 3.0276 3.3545 40 1 6.1144 4.1303 2.6296 41 1 6.7305 0.2421 0.9539 42 1 7.6693 0.7573 2.3754 43 1 5.9300 0.4134 2.5345 44 1 6.1046 3.3088 -0.9532 45 1 7.8878 4.2188 -2.3873 46 1 10.7599 3.4302 0.5031 47 1 9.0617 2.5045 2.0275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619712825.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:40 Heat of formation + Delta-G solvation = -73.770041 kcal Electronic energy + Delta-G solvation = -29877.411455 eV Core-core repulsion = 25992.744153 eV Total energy + Delta-G solvation = -3884.667302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44894 -38.77888 -38.25193 -37.65642 -36.87915 -34.71364 -34.56869 -32.26286 -31.60300 -31.48296 -28.50755 -28.14828 -27.30675 -24.93114 -24.54860 -23.94678 -23.27035 -20.56900 -20.46113 -18.87424 -18.55415 -18.31293 -17.58846 -17.38689 -17.01602 -16.59565 -16.30269 -15.90246 -15.69602 -15.30736 -14.98946 -14.75436 -14.70703 -14.59997 -14.45761 -14.30236 -13.76538 -13.63146 -13.51668 -13.37611 -13.17595 -13.05874 -13.00056 -12.80355 -12.79876 -12.72080 -12.66221 -12.27106 -12.20665 -12.14373 -12.06229 -11.76699 -11.57399 -11.50146 -10.57179 -10.48064 -10.41471 -10.35195 -10.04506 -9.76729 -8.15200 -6.26900 -0.27013 0.21631 0.31946 1.38964 1.44442 1.50687 2.01455 2.40831 2.62869 2.87671 3.17378 3.38977 3.48314 3.57817 3.67522 3.97325 4.01339 4.09873 4.16941 4.25115 4.30283 4.42305 4.45861 4.56605 4.70091 4.73882 4.78591 4.80457 4.87623 4.88500 4.95495 4.97051 5.01168 5.09509 5.17734 5.19831 5.30459 5.32053 5.40964 5.43135 5.48117 5.55530 5.79631 5.81131 5.91590 6.13897 6.25539 6.84831 7.03339 7.42255 8.92969 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.005810 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.010151 B = 4818.070445 C = 6739.715822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.529 4.529 6 H 0.076 0.924 7 C 0.025 3.975 8 N -0.924 5.924 9 Si 0.932 3.068 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.254 1.254 13 S 2.798 3.202 14 O -1.004 7.004 15 O -1.019 7.019 16 N -1.108 6.108 17 C 0.126 3.874 18 C -0.028 4.028 19 C -0.138 4.138 20 C -0.136 4.136 21 C -0.027 4.027 22 C -0.188 4.188 23 C 0.082 3.918 24 N -0.513 5.513 25 C 0.090 3.910 26 C -0.156 4.156 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.015 0.985 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.422 0.578 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.125 0.875 45 H 0.147 0.853 46 H 0.187 0.813 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.686 -6.500 12.658 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.568 4.568 6 H 0.094 0.906 7 C -0.175 4.175 8 N -0.563 5.563 9 Si 0.757 3.243 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.178 1.178 13 S 2.806 3.194 14 O -0.988 6.988 15 O -1.003 7.003 16 N -0.872 5.872 17 C 0.000 4.000 18 C -0.029 4.029 19 C -0.195 4.195 20 C -0.193 4.193 21 C -0.036 4.036 22 C -0.208 4.208 23 C -0.074 4.074 24 N -0.222 5.222 25 C -0.067 4.067 26 C -0.175 4.175 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.260 0.740 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.143 0.857 45 H 0.164 0.836 46 H 0.204 0.796 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 9.652 -5.407 12.339 16.573 hybrid contribution -0.161 -0.422 -0.819 0.935 sum 9.491 -5.829 11.520 16.024 Atomic orbital electron populations 1.22197 0.96135 1.03128 1.01240 1.21237 0.94440 0.81281 1.03368 1.57618 1.79460 1.24136 1.22460 1.18747 0.96406 0.91149 0.80216 1.21725 1.07456 1.20038 1.07625 0.90632 1.25570 0.99445 0.94794 0.97719 1.70047 1.39927 1.25761 1.20583 0.85963 0.80948 0.77959 0.79406 1.20754 1.21123 1.17777 1.01151 0.73243 0.72737 0.72236 1.93534 1.70454 1.76298 1.58489 1.93531 1.86787 1.33910 1.86074 1.55569 1.23927 1.68267 1.39477 1.21510 0.87065 0.98443 0.93013 1.19726 0.90325 0.98055 0.94815 1.21919 1.03856 0.98968 0.94775 1.21906 1.03457 0.91849 1.02118 1.20312 0.95567 0.94460 0.93252 1.22362 1.01497 1.00842 0.96106 1.22732 0.88479 0.96347 0.99818 1.67665 1.19778 1.16996 1.17795 1.23332 1.01512 0.93212 0.88629 1.22243 0.91738 1.00884 1.02626 0.89117 0.93676 0.93394 0.90003 0.89502 0.96723 0.96067 0.92688 0.74049 0.90523 0.92878 0.90904 0.89401 0.93749 0.93204 0.89529 0.90469 0.85714 0.83592 0.79563 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 10.24 71.98 0.74 -4.28 16 2 C 0.12 3.93 6.01 86.38 0.52 4.45 16 3 N -1.00 -39.11 2.85 -519.85 -1.48 -40.59 16 4 C 0.26 12.52 5.48 85.64 0.47 12.99 16 5 C -0.53 -25.77 7.92 25.60 0.20 -25.56 16 6 H 0.08 3.45 6.79 -2.91 -0.02 3.43 16 7 C 0.02 1.28 5.46 84.66 0.46 1.74 16 8 N -0.92 -51.79 13.29 21.45 0.28 -51.51 16 9 Si 0.93 40.54 29.54 68.60 2.03 42.57 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 13 S 2.80 105.57 6.11 -56.49 -0.34 105.23 16 14 O -1.00 -37.97 17.09 -128.00 -2.19 -40.16 16 15 O -1.02 -47.27 16.09 -128.00 -2.06 -49.33 16 16 N -1.11 -32.43 5.38 -187.50 -1.01 -33.43 16 17 C 0.13 3.98 3.74 86.38 0.32 4.30 16 18 C -0.03 -0.64 0.63 -52.93 -0.03 -0.67 16 19 C -0.14 -2.67 8.13 71.98 0.59 -2.08 16 20 C -0.14 -2.42 8.13 71.98 0.58 -1.84 16 21 C -0.03 -0.70 4.77 -19.67 -0.09 -0.79 16 22 C -0.19 -6.15 9.05 22.36 0.20 -5.95 16 23 C 0.08 2.65 11.18 84.68 0.95 3.60 16 24 N -0.51 -15.15 10.36 -195.85 -2.03 -17.18 16 25 C 0.09 1.97 11.18 84.68 0.95 2.92 16 26 C -0.16 -3.08 8.84 22.36 0.20 -2.88 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.42 8.10 -2.38 -0.02 1.40 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.62 8.04 -2.39 -0.02 2.61 16 31 H 0.09 2.35 7.65 -2.38 -0.02 2.33 16 32 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.02 1.17 6.83 -2.39 -0.02 1.16 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.42 9.28 6.49 -96.74 -0.63 8.66 16 36 H 0.08 2.74 5.04 -2.39 -0.01 2.72 16 37 H 0.05 1.98 7.15 -2.38 -0.02 1.96 16 38 H 0.07 1.28 7.21 -2.39 -0.02 1.26 16 39 H 0.09 1.18 7.48 -2.39 -0.02 1.16 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.09 7.48 -2.39 -0.02 1.07 16 43 H 0.08 1.15 6.59 -2.39 -0.02 1.13 16 44 H 0.12 4.70 6.07 -2.91 -0.02 4.68 16 45 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 46 H 0.19 2.62 8.06 -2.91 -0.02 2.59 16 47 H 0.17 1.99 7.28 -2.91 -0.02 1.96 16 Total: -1.00 -68.55 386.11 -0.40 -68.95 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.35 Total: 29.52 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 6.05 Total: -14.07 kcal Atomic # 7 Polarization: -138.48 SS G_CDS: -4.23 Total: -142.71 kcal Atomic # 8 Polarization: -85.24 SS G_CDS: -4.25 Total: -89.49 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 105.57 SS G_CDS: -0.34 Total: 105.23 kcal Total: -68.55 -0.40 -68.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619712825.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.816 kcal (2) G-P(sol) polarization free energy of solvation -68.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds