Wall clock time and date at job start Wed Apr 1 2020 00:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.46507 * 119.99848 * 60.00407 * 12 2 1 14 14 S 1.65600 * 120.00190 * 240.00150 * 12 2 1 15 15 O 1.42105 * 106.39904 * 203.53992 * 14 12 2 16 16 O 1.42096 * 106.39936 * 336.46149 * 14 12 2 17 17 N 1.65595 * 107.21701 * 90.00283 * 14 12 2 18 18 C 1.46497 * 120.00498 * 64.99908 * 17 14 12 19 19 C 1.52998 * 109.47544 * 164.99742 * 18 17 14 20 20 C 1.52992 * 109.47309 * 300.00316 * 19 18 17 21 21 C 1.53002 * 109.46997 * 60.00508 * 19 18 17 22 22 C 1.50704 * 109.47118 * 179.97438 * 19 18 17 23 23 C 1.38644 * 120.78951 * 359.72680 * 22 19 18 24 24 C 1.38205 * 119.15862 * 179.79914 * 23 22 19 25 25 N 1.31866 * 120.76886 * 0.47877 * 24 23 22 26 26 C 1.31880 * 121.72312 * 359.74785 * 25 24 23 27 27 C 1.38202 * 120.76384 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 29 29 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 31 31 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 32 32 H 1.08993 * 109.47215 * 89.99564 * 13 12 2 33 33 H 1.09001 * 109.46606 * 210.00169 * 13 12 2 34 34 H 1.09004 * 109.46774 * 329.99892 * 13 12 2 35 35 H 0.96997 * 120.00146 * 245.00072 * 17 14 12 36 36 H 1.09004 * 109.47405 * 285.00281 * 18 17 14 37 37 H 1.09006 * 109.46952 * 45.00104 * 18 17 14 38 38 H 1.09003 * 109.47099 * 59.99609 * 20 19 18 39 39 H 1.09005 * 109.47433 * 179.97438 * 20 19 18 40 40 H 1.08997 * 109.47233 * 299.99479 * 20 19 18 41 41 H 1.09002 * 109.47728 * 59.99436 * 21 19 18 42 42 H 1.08997 * 109.47389 * 180.02562 * 21 19 18 43 43 H 1.09003 * 109.46720 * 299.99968 * 21 19 18 44 44 H 1.08002 * 120.42291 * 359.97438 * 23 22 19 45 45 H 1.08003 * 119.61777 * 180.20971 * 24 23 22 46 46 H 1.07999 * 119.61571 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.41801 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0933 1.4279 14 16 2.9705 0.1142 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0354 4.2817 19 6 0.6087 0.8072 5.4378 20 6 1.7767 1.3988 6.2294 21 6 -0.2560 1.9402 4.8814 22 6 -0.2248 -0.0612 6.3446 23 6 -0.4071 -1.4073 6.0673 24 6 -1.1746 -2.1734 6.9240 25 7 -1.7375 -1.6360 7.9886 26 6 -1.5895 -0.3585 8.2808 27 6 -0.8323 0.4684 7.4729 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 1.9111 -0.5221 -4.4375 32 1 2.4158 -2.7377 0.9715 33 1 1.6239 -2.2853 2.5001 34 1 0.6905 -2.3002 0.9845 35 1 1.9054 1.7748 3.4682 36 1 0.3188 -0.4569 3.7177 37 1 1.7670 -0.8426 4.6781 38 1 2.3792 2.0270 5.5733 39 1 1.3904 1.9995 7.0529 40 1 2.3927 0.5917 6.6259 41 1 -1.0882 1.5188 4.3173 42 1 -0.6420 2.5408 5.7050 43 1 0.3465 2.5684 4.2252 44 1 0.0473 -1.8523 5.1944 45 1 -1.3187 -3.2236 6.7170 46 1 -2.0656 0.0461 9.1618 47 1 -0.7151 1.5139 7.7173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:24 Heat of formation + Delta-G solvation = -35.865471 kcal Electronic energy + Delta-G solvation = -29124.752034 eV Core-core repulsion = 25241.728397 eV Total energy + Delta-G solvation = -3883.023637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80367 -38.04701 -36.81140 -36.45526 -35.37649 -33.74510 -32.53414 -31.62704 -30.90495 -30.08692 -27.59813 -26.62071 -25.85296 -25.04414 -23.88704 -23.26494 -21.00349 -19.89658 -19.12759 -17.67683 -17.27000 -16.85030 -16.71953 -16.27462 -15.89076 -15.64793 -15.15134 -14.98801 -14.57025 -14.19852 -14.05773 -13.84901 -13.78168 -13.55551 -13.40177 -12.86350 -12.85309 -12.35534 -12.28476 -12.22666 -12.20675 -11.98055 -11.82237 -11.65656 -11.54245 -11.51800 -11.49557 -11.25108 -11.13439 -10.88244 -10.51760 -10.19701 -9.81696 -9.72027 -9.66828 -9.49601 -9.44101 -9.38451 -8.66780 -8.17597 -6.15300 -4.16071 0.86640 0.97186 1.02262 3.19053 3.28694 3.32130 3.33750 3.54006 3.93030 4.13608 4.17389 4.21065 4.31648 4.58290 4.69315 4.75807 4.83361 4.85115 4.90131 5.13941 5.21328 5.29617 5.35052 5.37045 5.40705 5.45952 5.50288 5.55610 5.59766 5.67948 5.79492 5.93530 5.96326 5.99397 6.07536 6.13811 6.18990 6.27148 6.42333 6.43474 6.52044 6.75222 6.95948 7.24640 7.36681 7.59611 7.71092 8.44047 8.89073 9.44362 10.97740 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.003364 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.465419 B = 8322.296263 C = 8618.820075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.241 3.759 3 H 0.057 0.943 4 C -0.523 4.523 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.293 1.293 12 N -0.983 5.983 13 C 0.107 3.893 14 S 2.781 3.219 15 O -0.989 6.989 16 O -0.973 6.973 17 N -1.132 6.132 18 C 0.127 3.873 19 C -0.032 4.032 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.021 4.021 23 C -0.174 4.174 24 C 0.103 3.897 25 N -0.491 5.491 26 C 0.098 3.902 27 C -0.167 4.167 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.140 0.860 45 H 0.157 0.843 46 H 0.153 0.847 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 3.444 21.904 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.074 0.926 4 C -0.562 4.562 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.221 1.221 12 N -0.825 5.825 13 C -0.039 4.039 14 S 2.789 3.211 15 O -0.972 6.972 16 O -0.957 6.957 17 N -0.892 5.892 18 C 0.000 4.000 19 C -0.034 4.034 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.030 4.030 23 C -0.194 4.194 24 C -0.054 4.054 25 N -0.200 5.200 26 C -0.059 4.059 27 C -0.187 4.187 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.158 0.842 45 H 0.174 0.826 46 H 0.171 0.829 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.382 2.750 22.236 23.590 hybrid contribution -0.609 1.651 -0.887 1.971 sum -7.991 4.400 21.349 23.216 Atomic orbital electron populations 1.22492 0.99161 1.01415 0.99040 1.19073 0.90302 0.93601 0.83441 0.92565 1.21159 1.32523 1.14348 0.88199 0.89984 1.24908 0.95752 0.96528 0.95710 1.69873 1.45096 1.40195 0.97971 0.86948 0.80453 0.83852 0.77537 1.20418 1.18958 1.22082 1.57423 1.70086 1.19997 1.35039 1.21220 1.02126 0.81796 0.98727 1.01939 0.73513 0.73205 0.72424 1.93556 1.68708 1.60608 1.74324 1.93617 1.74161 1.56041 1.71881 1.56287 1.62620 1.17412 1.52907 1.21378 0.95043 0.92946 0.90594 1.19714 0.95031 0.95011 0.93637 1.21893 0.96836 1.01230 0.99752 1.21906 0.99625 0.97061 1.01187 1.20146 0.94633 0.93880 0.94348 1.22232 1.00989 0.94304 1.01848 1.22797 0.92522 1.00337 0.89731 1.67683 1.20720 1.13432 1.18195 1.22735 0.95339 0.89255 0.98540 1.21949 0.99467 1.01500 0.95805 0.93270 0.92167 0.94871 0.92422 0.92638 0.93230 0.90829 0.75412 0.91210 0.90076 0.91413 0.92113 0.91944 0.91838 0.92000 0.91498 0.84211 0.82612 0.82922 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.65 37.16 0.32 -2.83 16 2 C 0.24 5.38 2.21 -69.08 -0.15 5.22 16 3 H 0.06 1.34 5.97 -51.93 -0.31 1.03 16 4 C -0.52 -14.17 8.95 -34.44 -0.31 -14.47 16 5 H 0.08 2.42 7.89 -52.49 -0.41 2.00 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 8 Si 0.88 21.08 24.37 -169.99 -4.14 16.94 16 9 H -0.28 -6.31 6.88 56.52 0.39 -5.92 16 10 H -0.26 -6.04 6.52 56.52 0.37 -5.67 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 N -0.98 -18.66 3.12 -115.85 -0.36 -19.02 16 13 C 0.11 1.75 9.53 59.85 0.57 2.32 16 14 S 2.78 49.60 6.10 -107.50 -0.66 48.94 16 15 O -0.99 -19.06 16.68 -57.17 -0.95 -20.02 16 16 O -0.97 -21.04 16.70 -57.17 -0.95 -22.00 16 17 N -1.13 -14.10 5.39 -10.61 -0.06 -14.15 16 18 C 0.13 1.31 3.82 -4.04 -0.02 1.29 16 19 C -0.03 -0.27 0.63 -155.66 -0.10 -0.37 16 20 C -0.14 -1.11 8.13 37.15 0.30 -0.81 16 21 C -0.14 -1.08 8.12 37.16 0.30 -0.78 16 22 C -0.02 -0.18 4.77 -104.32 -0.50 -0.68 16 23 C -0.17 -1.52 9.05 -39.44 -0.36 -1.88 16 24 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 25 N -0.49 -5.02 10.36 -13.25 -0.14 -5.15 16 26 C 0.10 0.82 11.18 -17.54 -0.20 0.62 16 27 C -0.17 -1.28 8.84 -39.44 -0.35 -1.63 16 28 H 0.05 1.02 3.28 -51.93 -0.17 0.85 16 29 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 34 H 0.07 1.13 6.43 -51.93 -0.33 0.79 16 35 H 0.41 4.39 6.47 -34.47 -0.22 4.16 16 36 H 0.07 0.67 7.55 -51.93 -0.39 0.28 16 37 H 0.08 0.85 7.19 -51.93 -0.37 0.48 16 38 H 0.07 0.54 7.20 -51.93 -0.37 0.17 16 39 H 0.06 0.39 7.48 -51.93 -0.39 0.00 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.39 7.48 -51.93 -0.39 0.00 16 43 H 0.07 0.51 6.60 -51.93 -0.34 0.16 16 44 H 0.14 1.06 6.07 -52.49 -0.32 0.75 16 45 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 46 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.13 0.75 7.28 -52.49 -0.38 0.37 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -34.69 376.01 -8.47 -43.16 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.88 Total: 2.83 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.77 Total: -11.28 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: 0.22 Total: -64.23 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.91 Total: -42.01 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Atomic # 16 Polarization: 49.60 SS G_CDS: -0.66 Total: 48.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.69 -8.47 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.294 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds