Wall clock time and date at job start Wed Apr 1 2020 00:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47432 * 2 1 4 4 C 1.50700 * 109.46899 * 119.99650 * 2 1 3 5 5 H 1.08003 * 120.00301 * 120.00075 * 4 2 1 6 6 C 1.37883 * 120.00019 * 300.00101 * 4 2 1 7 7 N 1.31514 * 119.99724 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46850 * 90.00356 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00198 * 8 6 4 11 11 H 1.48503 * 109.47359 * 330.00213 * 8 6 4 12 12 N 1.46493 * 109.47467 * 239.99328 * 2 1 3 13 13 C 1.46494 * 120.00444 * 299.72792 * 12 2 1 14 14 S 1.65608 * 119.99916 * 120.00112 * 12 2 1 15 15 O 1.42100 * 106.40059 * 23.26834 * 14 12 2 16 16 O 1.42096 * 106.40050 * 156.18867 * 14 12 2 17 17 N 1.65599 * 107.21718 * 269.72928 * 14 12 2 18 18 C 1.46501 * 120.00418 * 64.99891 * 17 14 12 19 19 C 1.52998 * 109.47437 * 164.99857 * 18 17 14 20 20 C 1.53000 * 109.47029 * 300.00064 * 19 18 17 21 21 C 1.53004 * 109.46907 * 60.00051 * 19 18 17 22 22 C 1.50694 * 109.47279 * 179.97438 * 19 18 17 23 23 C 1.38655 * 120.78686 * 359.71863 * 22 19 18 24 24 C 1.38204 * 119.15759 * 179.79859 * 23 22 19 25 25 N 1.31870 * 120.76802 * 0.48886 * 24 23 22 26 26 C 1.31873 * 121.72223 * 359.73853 * 25 24 23 27 27 C 1.38198 * 120.76522 * 0.02649 * 26 25 24 28 28 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47439 * 300.00274 * 1 2 3 30 30 H 1.09000 * 109.46462 * 60.00600 * 1 2 3 31 31 H 0.97008 * 119.99813 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47693 * 270.27497 * 13 12 2 33 33 H 1.09003 * 109.47006 * 30.27410 * 13 12 2 34 34 H 1.09004 * 109.47665 * 150.27102 * 13 12 2 35 35 H 0.97001 * 119.99869 * 244.99685 * 17 14 12 36 36 H 1.09005 * 109.46517 * 285.00137 * 18 17 14 37 37 H 1.08996 * 109.46781 * 44.99791 * 18 17 14 38 38 H 1.08998 * 109.46976 * 60.00077 * 20 19 18 39 39 H 1.09004 * 109.46930 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47232 * 300.00092 * 20 19 18 41 41 H 1.08995 * 109.47406 * 59.99667 * 21 19 18 42 42 H 1.08995 * 109.46794 * 180.02562 * 21 19 18 43 43 H 1.09004 * 109.46995 * 300.00285 * 21 19 18 44 44 H 1.07998 * 120.41993 * 0.02562 * 23 22 19 45 45 H 1.08008 * 119.62091 * 180.20530 * 24 23 22 46 46 H 1.08001 * 119.61457 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.42071 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.6294 -0.5456 4.4125 10 1 1.3428 -0.9490 5.1121 11 1 2.4857 -2.5661 3.7122 12 7 2.0184 -0.6907 -1.1960 13 6 1.6696 -2.0950 -1.4248 14 16 2.9706 0.1140 -2.2861 15 8 3.5745 1.1867 -1.5763 16 8 3.7167 -0.8787 -2.9767 17 7 1.9613 0.8026 -3.4040 18 6 1.0254 1.8536 -2.9969 19 6 0.4916 2.5702 -4.2388 20 6 1.6575 3.1953 -5.0076 21 6 -0.2307 1.5641 -5.1372 22 6 -0.4716 3.6509 -3.8201 23 6 -0.7580 3.8663 -2.4807 24 6 -1.6432 4.8695 -2.1343 25 7 -2.2196 5.6101 -3.0606 26 6 -1.9745 5.4304 -4.3439 27 6 -1.0968 4.4496 -4.7653 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.7079 1.1611 3.4844 32 1 2.4217 -2.7359 -0.9649 33 1 0.6951 -2.3039 -0.9832 34 1 1.6321 -2.2902 -2.4965 35 1 1.9898 0.5100 -4.3284 36 1 0.1949 1.4082 -2.4492 37 1 1.5400 2.5703 -2.3570 38 1 2.3537 2.4133 -5.3105 39 1 1.2772 3.7054 -5.8926 40 1 2.1721 3.9120 -4.3676 41 1 -1.0612 1.1188 -4.5896 42 1 -0.6106 2.0746 -6.0221 43 1 0.4657 0.7821 -5.4401 44 1 -0.2923 3.2603 -1.7176 45 1 -1.8692 5.0459 -1.0929 46 1 -2.4653 6.0570 -5.0739 47 1 -0.9005 4.3070 -5.8177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:27 Heat of formation + Delta-G solvation = -45.051489 kcal Electronic energy + Delta-G solvation = -29379.665571 eV Core-core repulsion = 25496.243598 eV Total energy + Delta-G solvation = -3883.421972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59469 -37.86596 -36.68114 -36.19307 -35.24633 -33.56872 -32.60402 -31.39838 -30.72489 -29.14709 -27.47428 -26.41738 -25.62459 -25.16784 -23.68006 -23.05203 -20.82660 -19.72004 -19.00886 -17.57647 -16.93518 -16.65256 -16.45868 -16.17731 -15.71622 -15.34580 -14.99234 -14.76652 -14.35966 -14.06129 -13.86651 -13.65377 -13.57125 -13.46247 -13.18528 -12.83724 -12.71149 -12.15420 -12.08796 -11.99200 -11.76496 -11.70903 -11.48437 -11.43344 -11.37246 -11.32793 -11.24933 -10.98893 -10.84630 -10.70128 -10.47452 -10.30754 -10.04803 -9.61111 -9.50708 -9.32625 -9.28567 -9.17052 -8.47788 -8.01407 -6.10618 -4.16515 1.08762 1.17309 1.18367 3.27791 3.34455 3.37041 3.47420 3.75482 4.07096 4.31055 4.35900 4.39113 4.42401 4.76043 4.89191 4.94321 5.01979 5.03666 5.14509 5.21418 5.39918 5.44454 5.54358 5.55250 5.59125 5.63995 5.71641 5.73695 5.77430 5.89015 5.91453 6.10171 6.12694 6.15001 6.29011 6.36023 6.59019 6.65158 6.71836 6.75171 6.94316 7.11210 7.44540 7.59621 7.75342 7.92536 7.99949 8.24183 8.85565 9.49524 10.95149 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.004158 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.061108 B = 6733.116650 C = 8390.909201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.111 3.889 14 S 2.779 3.221 15 O -0.973 6.973 16 O -0.997 6.997 17 N -1.132 6.132 18 C 0.125 3.875 19 C -0.032 4.032 20 C -0.139 4.139 21 C -0.138 4.138 22 C -0.024 4.024 23 C -0.169 4.169 24 C 0.104 3.896 25 N -0.491 5.491 26 C 0.094 3.906 27 C -0.169 4.169 28 H 0.034 0.966 29 H 0.094 0.906 30 H 0.011 0.989 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.407 0.593 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.145 0.855 45 H 0.158 0.842 46 H 0.152 0.848 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 4.230 -15.992 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.834 5.834 13 C -0.035 4.035 14 S 2.788 3.212 15 O -0.957 6.957 16 O -0.981 6.981 17 N -0.892 5.892 18 C -0.002 4.002 19 C -0.033 4.033 20 C -0.197 4.197 21 C -0.196 4.196 22 C -0.032 4.032 23 C -0.189 4.189 24 C -0.052 4.052 25 N -0.201 5.201 26 C -0.062 4.062 27 C -0.189 4.189 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.241 0.759 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.163 0.837 45 H 0.176 0.824 46 H 0.169 0.831 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.397 5.128 -15.384 17.091 hybrid contribution 0.444 -1.309 0.277 1.409 sum -4.953 3.819 -15.108 16.351 Atomic orbital electron populations 1.22184 0.98328 0.99890 1.00515 1.18740 0.91198 0.93002 0.80664 0.92357 1.21326 1.31577 1.13028 0.90033 0.91986 1.24887 0.94916 0.95006 0.98958 1.69839 1.36497 1.22739 1.23809 0.86512 0.78691 0.79991 0.82311 1.20553 1.21172 1.19901 1.57679 1.70146 1.19775 1.35757 1.21120 1.01677 0.81947 0.98768 1.01959 0.73544 0.73207 0.72520 1.93599 1.73997 1.55654 1.72417 1.93548 1.69387 1.60149 1.75028 1.56236 1.57215 1.51730 1.23998 1.21470 0.93135 0.89715 0.95843 1.19703 0.94227 0.93323 0.96086 1.21889 0.96914 1.01105 0.99745 1.21885 1.00492 0.98253 0.98928 1.20123 0.94823 0.94883 0.93411 1.22348 0.99811 0.99950 0.96762 1.22842 0.92167 0.90886 0.99305 1.67683 1.23936 1.26581 1.01860 1.22693 0.95107 0.95656 0.92778 1.21902 0.99099 0.97503 1.00424 0.94699 0.88755 0.97029 0.92689 0.93326 0.91013 0.93334 0.75884 0.90616 0.89868 0.91615 0.92233 0.91889 0.91895 0.92120 0.91763 0.83735 0.82429 0.83100 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.95 37.16 0.33 -2.82 16 2 C 0.27 6.19 2.62 -69.08 -0.18 6.00 16 3 H 0.06 1.49 6.90 -51.93 -0.36 1.13 16 4 C -0.52 -13.63 8.37 -34.44 -0.29 -13.92 16 5 H 0.06 1.64 7.64 -52.48 -0.40 1.24 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.91 11.32 55.43 0.63 -23.28 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 12 N -0.99 -19.63 3.12 -115.86 -0.36 -19.99 16 13 C 0.11 1.92 9.52 59.84 0.57 2.49 16 14 S 2.78 52.04 6.10 -107.50 -0.66 51.38 16 15 O -0.97 -21.89 16.16 -57.17 -0.92 -22.82 16 16 O -1.00 -20.05 17.21 -57.17 -0.98 -21.04 16 17 N -1.13 -15.40 5.39 -10.61 -0.06 -15.45 16 18 C 0.12 1.63 3.82 -4.04 -0.02 1.61 16 19 C -0.03 -0.33 0.63 -155.66 -0.10 -0.42 16 20 C -0.14 -1.32 8.13 37.16 0.30 -1.02 16 21 C -0.14 -1.19 8.12 37.16 0.30 -0.89 16 22 C -0.02 -0.26 4.77 -104.32 -0.50 -0.75 16 23 C -0.17 -2.05 9.05 -39.44 -0.36 -2.41 16 24 C 0.10 1.27 11.18 -17.55 -0.20 1.08 16 25 N -0.49 -6.16 10.36 -13.25 -0.14 -6.30 16 26 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 27 C -0.17 -1.61 8.84 -39.44 -0.35 -1.96 16 28 H 0.03 0.70 6.67 -51.93 -0.35 0.36 16 29 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 30 H 0.01 0.20 6.19 -51.93 -0.32 -0.13 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.19 6.44 -51.93 -0.33 0.86 16 34 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 35 H 0.41 4.46 6.47 -34.47 -0.22 4.24 16 36 H 0.08 1.01 5.60 -51.93 -0.29 0.72 16 37 H 0.08 1.22 7.18 -51.93 -0.37 0.84 16 38 H 0.06 0.60 7.19 -51.93 -0.37 0.22 16 39 H 0.06 0.46 7.48 -51.93 -0.39 0.07 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.43 7.48 -51.93 -0.39 0.05 16 43 H 0.06 0.50 6.60 -51.93 -0.34 0.16 16 44 H 0.14 1.81 6.07 -52.49 -0.32 1.49 16 45 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 46 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.13 0.93 7.28 -52.49 -0.38 0.54 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -32.19 378.92 -9.38 -41.57 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.81 Total: 5.06 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.77 Total: -10.62 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 0.07 Total: -65.02 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.91 Total: -43.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.66 Total: 51.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.19 -9.38 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.482 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds