Wall clock time and date at job start Wed Apr 1 2020 00:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47432 * 2 1 4 4 C 1.50700 * 109.46899 * 119.99650 * 2 1 3 5 5 H 1.08003 * 120.00301 * 120.00075 * 4 2 1 6 6 C 1.37883 * 120.00019 * 300.00101 * 4 2 1 7 7 N 1.31514 * 119.99724 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99983 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46850 * 90.00356 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00198 * 8 6 4 11 11 H 1.48503 * 109.47359 * 330.00213 * 8 6 4 12 12 N 1.46493 * 109.47467 * 239.99328 * 2 1 3 13 13 C 1.46494 * 120.00444 * 299.72792 * 12 2 1 14 14 S 1.65608 * 119.99916 * 120.00112 * 12 2 1 15 15 O 1.42100 * 106.40059 * 23.26834 * 14 12 2 16 16 O 1.42096 * 106.40050 * 156.18867 * 14 12 2 17 17 N 1.65599 * 107.21718 * 269.72928 * 14 12 2 18 18 C 1.46501 * 120.00418 * 64.99891 * 17 14 12 19 19 C 1.52998 * 109.47437 * 164.99857 * 18 17 14 20 20 C 1.53000 * 109.47029 * 300.00064 * 19 18 17 21 21 C 1.53004 * 109.46907 * 60.00051 * 19 18 17 22 22 C 1.50694 * 109.47279 * 179.97438 * 19 18 17 23 23 C 1.38655 * 120.78686 * 359.71863 * 22 19 18 24 24 C 1.38204 * 119.15759 * 179.79859 * 23 22 19 25 25 N 1.31870 * 120.76802 * 0.48886 * 24 23 22 26 26 C 1.31873 * 121.72223 * 359.73853 * 25 24 23 27 27 C 1.38198 * 120.76522 * 0.02649 * 26 25 24 28 28 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47439 * 300.00274 * 1 2 3 30 30 H 1.09000 * 109.46462 * 60.00600 * 1 2 3 31 31 H 0.97008 * 119.99813 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47693 * 270.27497 * 13 12 2 33 33 H 1.09003 * 109.47006 * 30.27410 * 13 12 2 34 34 H 1.09004 * 109.47665 * 150.27102 * 13 12 2 35 35 H 0.97001 * 119.99869 * 244.99685 * 17 14 12 36 36 H 1.09005 * 109.46517 * 285.00137 * 18 17 14 37 37 H 1.08996 * 109.46781 * 44.99791 * 18 17 14 38 38 H 1.08998 * 109.46976 * 60.00077 * 20 19 18 39 39 H 1.09004 * 109.46930 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47232 * 300.00092 * 20 19 18 41 41 H 1.08995 * 109.47406 * 59.99667 * 21 19 18 42 42 H 1.08995 * 109.46794 * 180.02562 * 21 19 18 43 43 H 1.09004 * 109.46995 * 300.00285 * 21 19 18 44 44 H 1.07998 * 120.41993 * 0.02562 * 23 22 19 45 45 H 1.08008 * 119.62091 * 180.20530 * 24 23 22 46 46 H 1.08001 * 119.61457 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.42071 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.6294 -0.5456 4.4125 10 1 1.3428 -0.9490 5.1121 11 1 2.4857 -2.5661 3.7122 12 7 2.0184 -0.6907 -1.1960 13 6 1.6696 -2.0950 -1.4248 14 16 2.9706 0.1140 -2.2861 15 8 3.5745 1.1867 -1.5763 16 8 3.7167 -0.8787 -2.9767 17 7 1.9613 0.8026 -3.4040 18 6 1.0254 1.8536 -2.9969 19 6 0.4916 2.5702 -4.2388 20 6 1.6575 3.1953 -5.0076 21 6 -0.2307 1.5641 -5.1372 22 6 -0.4716 3.6509 -3.8201 23 6 -0.7580 3.8663 -2.4807 24 6 -1.6432 4.8695 -2.1343 25 7 -2.2196 5.6101 -3.0606 26 6 -1.9745 5.4304 -4.3439 27 6 -1.0968 4.4496 -4.7653 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.7079 1.1611 3.4844 32 1 2.4217 -2.7359 -0.9649 33 1 0.6951 -2.3039 -0.9832 34 1 1.6321 -2.2902 -2.4965 35 1 1.9898 0.5100 -4.3284 36 1 0.1949 1.4082 -2.4492 37 1 1.5400 2.5703 -2.3570 38 1 2.3537 2.4133 -5.3105 39 1 1.2772 3.7054 -5.8926 40 1 2.1721 3.9120 -4.3676 41 1 -1.0612 1.1188 -4.5896 42 1 -0.6106 2.0746 -6.0221 43 1 0.4657 0.7821 -5.4401 44 1 -0.2923 3.2603 -1.7176 45 1 -1.8692 5.0459 -1.0929 46 1 -2.4653 6.0570 -5.0739 47 1 -0.9005 4.3070 -5.8177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619751082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:26 Heat of formation + Delta-G solvation = -67.447154 kcal Electronic energy + Delta-G solvation = -29380.636720 eV Core-core repulsion = 25496.243598 eV Total energy + Delta-G solvation = -3884.393121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43883 -38.82529 -38.27687 -37.87620 -36.88999 -34.65976 -34.50866 -32.23521 -31.57467 -30.90706 -28.16660 -27.45722 -27.24964 -26.97371 -24.54026 -23.93062 -22.58790 -20.59137 -20.42180 -19.03724 -18.52890 -18.15969 -17.63595 -17.39829 -16.94587 -16.61268 -16.28317 -15.80932 -15.76117 -15.19549 -15.00643 -14.78681 -14.67704 -14.63012 -14.40963 -14.30278 -13.73256 -13.56275 -13.37144 -13.24258 -13.15300 -13.05000 -12.97850 -12.84765 -12.78676 -12.72913 -12.59003 -12.22059 -12.21548 -12.14517 -12.11775 -11.87894 -11.59451 -11.12779 -10.56892 -10.47015 -10.42610 -10.35463 -10.01951 -9.67292 -8.11272 -6.23766 -0.33794 0.25761 0.33899 1.41800 1.44374 1.52610 2.03771 2.43469 2.62748 2.91174 3.17457 3.34879 3.45444 3.61396 3.65788 3.90406 4.05087 4.10825 4.17809 4.26009 4.28396 4.43937 4.59806 4.68529 4.70411 4.78153 4.81688 4.84488 4.89565 4.93628 4.95187 4.97707 5.04407 5.11076 5.14838 5.19082 5.20687 5.32115 5.38949 5.47077 5.62815 5.72357 5.83686 5.89245 6.10845 6.20112 6.32664 6.83176 7.08421 7.44972 8.92547 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.004158 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.061108 B = 6733.116650 C = 8390.909201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.274 3.726 3 H 0.027 0.973 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.268 1.268 12 N -0.997 5.997 13 C 0.104 3.896 14 S 2.795 3.205 15 O -1.016 7.016 16 O -1.009 7.009 17 N -1.109 6.109 18 C 0.122 3.878 19 C -0.023 4.023 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.028 4.028 23 C -0.188 4.188 24 C 0.089 3.911 25 N -0.516 5.516 26 C 0.090 3.910 27 C -0.159 4.159 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.424 0.576 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.130 0.870 45 H 0.160 0.840 46 H 0.182 0.818 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 3.759 -18.633 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.193 1.193 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.804 3.196 15 O -0.999 6.999 16 O -0.993 6.993 17 N -0.874 5.874 18 C -0.004 4.004 19 C -0.025 4.025 20 C -0.199 4.199 21 C -0.195 4.195 22 C -0.037 4.037 23 C -0.207 4.207 24 C -0.067 4.067 25 N -0.225 5.225 26 C -0.067 4.067 27 C -0.179 4.179 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.148 0.852 45 H 0.178 0.822 46 H 0.199 0.801 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.251 4.627 -18.039 19.644 hybrid contribution 0.720 -1.121 1.013 1.673 sum -5.531 3.506 -17.027 18.243 Atomic orbital electron populations 1.21961 0.96702 1.00250 1.00642 1.18404 0.92273 0.91333 0.81065 0.95499 1.21654 1.31654 1.13029 0.91626 0.92819 1.25560 0.95217 0.95708 1.01402 1.69950 1.37094 1.23553 1.24289 0.85684 0.77973 0.79222 0.79513 1.20963 1.20401 1.19274 1.57565 1.70117 1.20962 1.35294 1.21321 1.01623 0.80234 1.00937 1.01234 0.73477 0.72449 0.72416 1.93548 1.75432 1.57119 1.73837 1.93522 1.70174 1.60581 1.75052 1.55664 1.56488 1.51288 1.23912 1.21529 0.92344 0.89137 0.97376 1.19664 0.94534 0.93395 0.94909 1.21941 0.96574 1.01097 1.00265 1.21921 1.00318 0.98096 0.99168 1.20264 0.94992 0.95318 0.93109 1.22313 1.00558 1.00404 0.97475 1.22927 0.92667 0.91295 0.99776 1.67700 1.24680 1.27123 1.03024 1.23267 0.94973 0.95980 0.92445 1.22196 0.97784 0.96208 1.01669 0.94038 0.91384 0.94172 0.92657 0.94266 0.90383 0.90059 0.73821 0.91017 0.92154 0.91120 0.89564 0.93596 0.92514 0.89780 0.90773 0.85233 0.82242 0.80132 0.81724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 8.95 71.98 0.64 -5.14 16 2 C 0.27 12.95 2.62 44.25 0.12 13.07 16 3 H 0.03 1.45 6.90 -2.39 -0.02 1.44 16 4 C -0.54 -28.86 8.37 25.60 0.21 -28.64 16 5 H 0.05 2.88 7.64 -2.91 -0.02 2.86 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -49.99 11.32 21.45 0.24 -49.75 16 8 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 N -1.00 -39.47 3.12 -520.47 -1.62 -41.10 16 13 C 0.10 3.48 9.52 127.77 1.22 4.70 16 14 S 2.80 104.40 6.10 -56.49 -0.34 104.05 16 15 O -1.02 -47.12 16.16 -128.00 -2.07 -49.19 16 16 O -1.01 -39.58 17.21 -128.00 -2.20 -41.78 16 17 N -1.11 -28.84 5.39 -187.49 -1.01 -29.85 16 18 C 0.12 3.15 3.82 86.38 0.33 3.48 16 19 C -0.02 -0.43 0.63 -52.93 -0.03 -0.46 16 20 C -0.14 -2.33 8.13 71.98 0.59 -1.74 16 21 C -0.14 -1.88 8.12 71.98 0.58 -1.29 16 22 C -0.03 -0.57 4.77 -19.67 -0.09 -0.66 16 23 C -0.19 -4.65 9.05 22.36 0.20 -4.45 16 24 C 0.09 2.23 11.18 84.68 0.95 3.17 16 25 N -0.52 -12.58 10.36 -195.84 -2.03 -14.61 16 26 C 0.09 1.63 11.18 84.68 0.95 2.57 16 27 C -0.16 -2.53 8.84 22.36 0.20 -2.33 16 28 H 0.04 1.66 6.67 -2.39 -0.02 1.65 16 29 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 30 H 0.04 1.42 6.19 -2.39 -0.01 1.41 16 31 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.49 6.44 -2.39 -0.02 2.47 16 34 H 0.08 2.15 7.79 -2.38 -0.02 2.13 16 35 H 0.42 8.23 6.47 -96.74 -0.63 7.60 16 36 H 0.07 1.90 5.60 -2.38 -0.01 1.89 16 37 H 0.06 1.85 7.18 -2.39 -0.02 1.83 16 38 H 0.07 1.09 7.19 -2.39 -0.02 1.07 16 39 H 0.09 0.97 7.48 -2.38 -0.02 0.95 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.79 7.48 -2.39 -0.02 0.77 16 43 H 0.07 0.87 6.60 -2.39 -0.02 0.85 16 44 H 0.13 3.51 6.07 -2.91 -0.02 3.49 16 45 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 46 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 47 H 0.17 1.47 7.28 -2.91 -0.02 1.45 16 Total: -1.00 -70.82 378.92 -0.34 -71.16 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.36 Total: 22.15 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 6.31 Total: -16.13 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -4.42 Total: -135.31 kcal Atomic # 8 Polarization: -86.70 SS G_CDS: -4.27 Total: -90.97 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 104.40 SS G_CDS: -0.34 Total: 104.05 kcal Total: -70.82 -0.34 -71.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.717 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds