Wall clock time and date at job start Wed Apr 1 2020 00:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47022 * 2 1 4 4 C 1.46901 * 110.99793 * 293.95609 * 3 2 1 5 5 C 1.39673 * 111.00047 * 170.00053 * 3 2 1 6 6 C 1.38929 * 120.07517 * 59.99986 * 5 3 2 7 7 C 1.38077 * 119.92751 * 179.97438 * 6 5 3 8 8 C 1.38310 * 120.07229 * 0.02678 * 7 6 5 9 9 C 1.38262 * 120.15094 * 359.97192 * 8 7 6 10 10 C 1.38129 * 120.07446 * 359.74775 * 9 8 7 11 11 C 1.50699 * 120.03947 * 180.27119 * 10 9 8 12 12 N 1.46496 * 109.47252 * 260.25743 * 11 10 9 13 13 S 1.65600 * 119.99933 * 164.99897 * 12 11 10 14 14 O 1.42104 * 106.40184 * 178.54347 * 13 12 11 15 15 O 1.42095 * 106.40374 * 311.46071 * 13 12 11 16 16 N 1.65600 * 107.21686 * 65.00223 * 13 12 11 17 17 C 1.46500 * 119.99929 * 269.99846 * 16 13 12 18 18 C 1.46498 * 119.99703 * 90.00262 * 16 13 12 19 19 C 1.50698 * 109.47556 * 94.99979 * 18 16 13 20 20 H 1.08007 * 119.99859 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00416 * 179.97438 * 19 18 16 22 22 N 1.31519 * 119.99617 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00179 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46855 * 60.00347 * 23 21 19 25 25 H 1.48499 * 109.47268 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47266 * 300.00331 * 23 21 19 27 27 H 1.09001 * 109.47349 * 60.00258 * 1 2 3 28 28 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47190 * 299.99825 * 1 2 3 30 30 H 1.08997 * 109.47190 * 240.00175 * 2 1 3 31 31 H 1.09001 * 109.47349 * 119.99742 * 2 1 3 32 32 H 1.09002 * 109.47401 * 59.99808 * 4 3 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 4 3 2 34 34 H 1.09004 * 109.46970 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.03788 * 359.95215 * 6 5 3 36 36 H 1.08000 * 119.96620 * 179.97438 * 7 6 5 37 37 H 1.08003 * 119.92422 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.96492 * 180.02562 * 9 8 7 39 39 H 1.09000 * 109.46744 * 20.25795 * 11 10 9 40 40 H 1.09003 * 109.46999 * 140.25751 * 11 10 9 41 41 H 0.96998 * 120.00480 * 345.00516 * 12 11 10 42 42 H 1.08999 * 109.47119 * 90.00026 * 17 16 13 43 43 H 1.08997 * 109.46997 * 210.00180 * 17 16 13 44 44 H 1.09000 * 109.46821 * 330.00212 * 17 16 13 45 45 H 1.09001 * 109.46695 * 214.99651 * 18 16 13 46 46 H 1.08997 * 109.47403 * 334.99529 * 18 16 13 47 47 H 0.97002 * 119.99814 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 -1.2533 5 6 3.3972 1.4289 0.2264 6 6 4.2673 0.7908 -0.6487 7 6 5.6286 0.8366 -0.4222 8 6 6.1262 1.5164 0.6747 9 6 5.2631 2.1526 1.5476 10 6 3.9006 2.1156 1.3237 11 6 2.9610 2.8145 2.2723 12 7 2.3828 1.8359 3.1965 13 16 1.6140 2.3485 4.5707 14 8 1.1419 1.1794 5.2262 15 8 2.4813 3.2893 5.1886 16 7 0.2710 3.1927 4.0951 17 6 0.3569 4.6370 3.8657 18 6 -1.0030 2.4950 3.9040 19 6 -1.8259 2.5978 5.1622 20 1 -1.4388 3.1300 6.0186 21 6 -3.0733 2.0134 5.2199 22 7 -3.5448 1.3657 4.1769 23 14 -4.0930 2.1402 6.7799 24 1 -4.3521 3.5699 7.0869 25 1 -5.3844 1.4331 6.5860 26 1 -3.3529 1.5181 7.9070 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5864 2.0793 -1.3703 33 1 2.1201 1.5371 -2.0929 34 1 2.0440 3.0905 -1.2266 35 1 3.8793 0.2591 -1.5050 36 1 6.3055 0.3403 -1.1019 37 1 7.1914 1.5503 0.8498 38 1 5.6550 2.6829 2.4029 39 1 3.5095 3.5681 2.8374 40 1 2.1632 3.2946 1.7055 41 1 2.4503 0.8877 3.0036 42 1 0.6194 4.8246 2.8246 43 1 -0.6060 5.0978 4.0863 44 1 1.1211 5.0633 4.5156 45 1 -1.5462 2.9510 3.0763 46 1 -0.8124 1.4456 3.6792 47 1 -4.4223 0.9542 4.2176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730269132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:43 Heat of formation + Delta-G solvation = -37.715501 kcal Electronic energy + Delta-G solvation = -29170.966829 eV Core-core repulsion = 25287.862969 eV Total energy + Delta-G solvation = -3883.103860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.27244 -37.01953 -36.51120 -35.40533 -35.06125 -35.05660 -32.36682 -31.40080 -30.98804 -29.20271 -27.69357 -26.35867 -25.24319 -24.92974 -23.07445 -22.20084 -21.40965 -20.61043 -18.80054 -17.44208 -17.12219 -16.60101 -16.37792 -15.94052 -15.83920 -15.47751 -15.17650 -14.82795 -14.39366 -14.25342 -14.11665 -13.52162 -13.33627 -13.20498 -13.04370 -12.78037 -12.57982 -12.24926 -12.14769 -12.09217 -12.02322 -11.78399 -11.62070 -11.51188 -11.35305 -11.28733 -11.09893 -11.04982 -10.99582 -10.81280 -10.65008 -10.42180 -9.97579 -9.71226 -9.14068 -9.03759 -8.79349 -8.54503 -8.38369 -7.96104 -6.00879 -4.04220 1.03118 1.14039 1.47231 3.37169 3.40371 3.44827 3.46529 3.70940 3.78489 4.28478 4.49740 4.62534 4.70873 4.83750 4.95295 5.07240 5.14002 5.19101 5.22254 5.34407 5.35965 5.38330 5.48043 5.51912 5.61818 5.65424 5.74892 5.75948 5.90606 5.94631 6.05345 6.08312 6.13542 6.23262 6.30479 6.38111 6.42127 6.51266 6.65310 6.68140 6.83413 7.23997 7.31235 7.37759 7.53224 7.71875 7.97111 8.27899 8.97753 9.60401 11.07439 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003798 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.785887 B = 7370.768474 C = 8510.580433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 N -0.501 5.501 4 C 0.028 3.972 5 C 0.106 3.894 6 C -0.152 4.152 7 C -0.109 4.109 8 C -0.126 4.126 9 C -0.098 4.098 10 C -0.072 4.072 11 C 0.175 3.825 12 N -1.122 6.122 13 S 2.783 3.217 14 O -0.966 6.966 15 O -1.002 7.002 16 N -0.994 5.994 17 C 0.095 3.905 18 C 0.262 3.738 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.896 5.896 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.410 0.590 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.935 0.669 -14.007 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.067 4.067 3 N -0.223 5.223 4 C -0.118 4.118 5 C 0.011 3.989 6 C -0.173 4.173 7 C -0.128 4.128 8 C -0.144 4.144 9 C -0.118 4.118 10 C -0.074 4.074 11 C 0.049 3.951 12 N -0.880 5.880 13 S 2.791 3.209 14 O -0.950 6.950 15 O -0.985 6.985 16 N -0.837 5.837 17 C -0.051 4.051 18 C 0.140 3.860 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.243 0.757 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.744 0.875 -12.750 20.278 hybrid contribution -0.365 -0.836 -0.477 1.029 sum 15.379 0.039 -13.227 20.285 Atomic orbital electron populations 1.21829 0.93671 1.02069 1.03406 1.22150 0.96812 0.87052 1.00677 1.59614 1.09868 1.17156 1.35631 1.22462 1.02216 0.98757 0.88407 1.18730 0.88659 0.97070 0.94431 1.21637 0.94180 1.01346 1.00087 1.21021 0.94961 0.99109 0.97721 1.21152 0.99758 0.98392 0.95117 1.21144 0.92411 0.99018 0.99180 1.19846 0.93724 0.98706 0.95166 1.19887 0.95271 0.90057 0.89920 1.56117 1.73573 1.15762 1.42550 1.01850 0.72638 0.73251 0.73193 1.93636 1.80435 1.49098 1.71853 1.93508 1.66468 1.64297 1.74259 1.57545 1.25102 1.15887 1.85120 1.21349 1.03346 0.81259 0.99187 1.18978 0.78218 0.91690 0.97109 1.21496 1.01185 1.34519 0.99620 0.92334 1.24909 0.97579 0.94961 0.96492 1.69913 1.18684 1.35479 1.29392 0.86608 0.79201 0.78199 0.83731 1.20226 1.21233 1.20040 0.92764 0.92104 0.90468 0.94932 0.90685 0.90289 0.95550 0.91317 0.86409 0.86272 0.85958 0.85318 0.90681 0.90315 0.75715 0.94318 0.90549 0.91729 0.94825 0.94477 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.84 37.16 0.37 -1.49 16 2 C 0.06 0.67 5.26 -3.82 -0.02 0.65 16 3 N -0.50 -5.79 3.87 -178.95 -0.69 -6.48 16 4 C 0.03 0.28 9.05 60.07 0.54 0.82 16 5 C 0.11 1.20 4.65 -83.79 -0.39 0.81 16 6 C -0.15 -1.50 8.70 -39.38 -0.34 -1.85 16 7 C -0.11 -0.97 10.04 -39.61 -0.40 -1.37 16 8 C -0.13 -1.14 10.04 -39.55 -0.40 -1.53 16 9 C -0.10 -1.02 9.66 -39.61 -0.38 -1.40 16 10 C -0.07 -0.85 5.29 -104.42 -0.55 -1.40 16 11 C 0.17 2.31 6.00 -5.20 -0.03 2.28 16 12 N -1.12 -17.47 6.05 -11.66 -0.07 -17.54 16 13 S 2.78 56.12 6.10 -107.50 -0.66 55.46 16 14 O -0.97 -23.57 17.11 -57.17 -0.98 -24.54 16 15 O -1.00 -21.08 16.21 -57.17 -0.93 -22.01 16 16 N -0.99 -20.73 3.23 -123.06 -0.40 -21.13 16 17 C 0.10 1.65 10.68 59.85 0.64 2.29 16 18 C 0.26 6.57 5.08 -5.20 -0.03 6.55 16 19 C -0.53 -14.96 9.38 -34.44 -0.32 -15.29 16 20 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 22 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 23 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.05 0.60 6.55 -51.93 -0.34 0.26 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.03 0.32 7.47 -51.93 -0.39 -0.06 16 31 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 32 H 0.08 0.77 6.47 -51.93 -0.34 0.43 16 33 H 0.03 0.23 7.48 -51.93 -0.39 -0.16 16 34 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 35 H 0.12 1.04 7.16 -52.49 -0.38 0.66 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.13 1.20 8.04 -52.49 -0.42 0.77 16 39 H 0.07 0.95 7.62 -51.93 -0.40 0.56 16 40 H 0.08 1.04 7.80 -51.93 -0.40 0.64 16 41 H 0.41 6.06 8.64 -34.47 -0.30 5.76 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 44 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 45 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 46 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -33.73 396.74 -10.89 -44.61 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.45 Total: 3.23 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.41 Total: -9.25 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -0.42 Total: -70.47 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.91 Total: -46.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.66 Total: 55.46 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.73 -10.89 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730269132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.898 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds