Wall clock time and date at job start Wed Apr 1 2020 00:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47022 * 2 1 4 4 C 1.46901 * 110.99793 * 293.95609 * 3 2 1 5 5 C 1.39673 * 111.00047 * 170.00053 * 3 2 1 6 6 C 1.38929 * 120.07517 * 59.99986 * 5 3 2 7 7 C 1.38077 * 119.92751 * 179.97438 * 6 5 3 8 8 C 1.38310 * 120.07229 * 0.02678 * 7 6 5 9 9 C 1.38262 * 120.15094 * 359.97192 * 8 7 6 10 10 C 1.38129 * 120.07446 * 359.74775 * 9 8 7 11 11 C 1.50699 * 120.03947 * 180.27119 * 10 9 8 12 12 N 1.46496 * 109.47252 * 260.25743 * 11 10 9 13 13 S 1.65600 * 119.99933 * 164.99897 * 12 11 10 14 14 O 1.42104 * 106.40184 * 178.54347 * 13 12 11 15 15 O 1.42095 * 106.40374 * 311.46071 * 13 12 11 16 16 N 1.65600 * 107.21686 * 65.00223 * 13 12 11 17 17 C 1.46500 * 119.99929 * 269.99846 * 16 13 12 18 18 C 1.46498 * 119.99703 * 90.00262 * 16 13 12 19 19 C 1.50698 * 109.47556 * 94.99979 * 18 16 13 20 20 H 1.08007 * 119.99859 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00416 * 179.97438 * 19 18 16 22 22 N 1.31519 * 119.99617 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00179 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46855 * 60.00347 * 23 21 19 25 25 H 1.48499 * 109.47268 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47266 * 300.00331 * 23 21 19 27 27 H 1.09001 * 109.47349 * 60.00258 * 1 2 3 28 28 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47190 * 299.99825 * 1 2 3 30 30 H 1.08997 * 109.47190 * 240.00175 * 2 1 3 31 31 H 1.09001 * 109.47349 * 119.99742 * 2 1 3 32 32 H 1.09002 * 109.47401 * 59.99808 * 4 3 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 4 3 2 34 34 H 1.09004 * 109.46970 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.03788 * 359.95215 * 6 5 3 36 36 H 1.08000 * 119.96620 * 179.97438 * 7 6 5 37 37 H 1.08003 * 119.92422 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.96492 * 180.02562 * 9 8 7 39 39 H 1.09000 * 109.46744 * 20.25795 * 11 10 9 40 40 H 1.09003 * 109.46999 * 140.25751 * 11 10 9 41 41 H 0.96998 * 120.00480 * 345.00516 * 12 11 10 42 42 H 1.08999 * 109.47119 * 90.00026 * 17 16 13 43 43 H 1.08997 * 109.46997 * 210.00180 * 17 16 13 44 44 H 1.09000 * 109.46821 * 330.00212 * 17 16 13 45 45 H 1.09001 * 109.46695 * 214.99651 * 18 16 13 46 46 H 1.08997 * 109.47403 * 334.99529 * 18 16 13 47 47 H 0.97002 * 119.99814 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 -1.2533 5 6 3.3972 1.4289 0.2264 6 6 4.2673 0.7908 -0.6487 7 6 5.6286 0.8366 -0.4222 8 6 6.1262 1.5164 0.6747 9 6 5.2631 2.1526 1.5476 10 6 3.9006 2.1156 1.3237 11 6 2.9610 2.8145 2.2723 12 7 2.3828 1.8359 3.1965 13 16 1.6140 2.3485 4.5707 14 8 1.1419 1.1794 5.2262 15 8 2.4813 3.2893 5.1886 16 7 0.2710 3.1927 4.0951 17 6 0.3569 4.6370 3.8657 18 6 -1.0030 2.4950 3.9040 19 6 -1.8259 2.5978 5.1622 20 1 -1.4388 3.1300 6.0186 21 6 -3.0733 2.0134 5.2199 22 7 -3.5448 1.3657 4.1769 23 14 -4.0930 2.1402 6.7799 24 1 -4.3521 3.5699 7.0869 25 1 -5.3844 1.4331 6.5860 26 1 -3.3529 1.5181 7.9070 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5864 2.0793 -1.3703 33 1 2.1201 1.5371 -2.0929 34 1 2.0440 3.0905 -1.2266 35 1 3.8793 0.2591 -1.5050 36 1 6.3055 0.3403 -1.1019 37 1 7.1914 1.5503 0.8498 38 1 5.6550 2.6829 2.4029 39 1 3.5095 3.5681 2.8374 40 1 2.1632 3.2946 1.7055 41 1 2.4503 0.8877 3.0036 42 1 0.6194 4.8246 2.8246 43 1 -0.6060 5.0978 4.0863 44 1 1.1211 5.0633 4.5156 45 1 -1.5462 2.9510 3.0763 46 1 -0.8124 1.4456 3.6792 47 1 -4.4223 0.9542 4.2176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730269132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:40 Heat of formation + Delta-G solvation = -61.159193 kcal Electronic energy + Delta-G solvation = -29171.983424 eV Core-core repulsion = 25287.862969 eV Total energy + Delta-G solvation = -3884.120455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.07557 -38.25968 -37.82162 -37.16578 -36.81407 -36.21354 -34.46498 -32.29981 -31.88893 -30.01701 -29.62277 -27.24694 -26.73863 -26.13553 -24.16169 -23.90728 -22.27563 -21.43223 -20.33683 -18.96190 -18.41660 -18.35654 -17.89315 -17.32930 -16.81663 -16.68033 -16.33235 -16.08841 -15.80251 -15.25386 -15.05414 -14.97280 -14.90467 -14.44489 -14.03274 -13.94944 -13.85864 -13.73860 -13.43374 -13.29277 -13.20730 -13.09494 -13.01788 -12.91414 -12.90060 -12.72314 -12.67605 -12.44942 -12.33889 -12.16664 -12.01945 -11.91122 -11.73760 -11.73488 -10.57192 -10.40620 -9.83430 -9.71518 -9.55575 -9.36370 -8.17054 -6.28757 -0.30270 0.36507 0.43667 1.39935 1.43682 1.50577 2.12327 2.42528 2.66240 2.86078 2.89837 3.13405 3.50008 3.80208 3.94649 4.06641 4.14501 4.18974 4.22725 4.40144 4.43354 4.46951 4.51215 4.58953 4.66513 4.74664 4.78025 4.82510 4.86547 4.89688 4.96470 5.04507 5.10743 5.12211 5.14754 5.25075 5.40843 5.48373 5.51743 5.58514 5.63821 5.73727 5.90620 5.93983 6.00162 6.12853 6.19237 6.50194 6.79009 7.39484 8.89884 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003798 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.785887 B = 7370.768474 C = 8510.580433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 N -0.518 5.518 4 C 0.030 3.970 5 C 0.095 3.905 6 C -0.156 4.156 7 C -0.105 4.105 8 C -0.125 4.125 9 C -0.105 4.105 10 C -0.090 4.090 11 C 0.173 3.827 12 N -1.107 6.107 13 S 2.799 3.201 14 O -1.014 7.014 15 O -1.010 7.010 16 N -1.000 6.000 17 C 0.089 3.911 18 C 0.281 3.719 19 C -0.552 4.552 20 H 0.050 0.950 21 C 0.014 3.986 22 N -0.921 5.921 23 Si 0.953 3.047 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.279 1.279 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.415 0.585 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.026 0.974 46 H 0.014 0.986 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.469 0.965 -15.178 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 N -0.239 5.239 4 C -0.116 4.116 5 C 0.001 3.999 6 C -0.176 4.176 7 C -0.123 4.123 8 C -0.143 4.143 9 C -0.125 4.125 10 C -0.093 4.093 11 C 0.048 3.952 12 N -0.868 5.868 13 S 2.807 3.193 14 O -0.998 6.998 15 O -0.993 6.993 16 N -0.842 5.842 17 C -0.056 4.056 18 C 0.157 3.843 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.186 4.186 22 N -0.560 5.560 23 Si 0.778 3.222 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.204 1.204 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.249 0.751 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.032 0.968 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.286 1.201 -13.923 22.229 hybrid contribution -0.725 -0.920 -0.207 1.190 sum 16.561 0.281 -14.130 21.772 Atomic orbital electron populations 1.21768 0.94697 1.02011 1.02040 1.22071 0.95817 0.87406 1.00976 1.59549 1.10481 1.17174 1.36733 1.22461 1.02078 0.98858 0.88237 1.18811 0.88645 0.97618 0.94832 1.21785 0.94576 1.01146 1.00102 1.21369 0.94923 0.98264 0.97788 1.21460 1.00877 0.97419 0.94549 1.21323 0.92021 0.99269 0.99844 1.19765 0.94058 1.00067 0.95393 1.20031 0.95678 0.89730 0.89800 1.55714 1.72727 1.16505 1.41885 1.01134 0.72351 0.72190 0.73578 1.93565 1.81346 1.50974 1.73903 1.93489 1.66342 1.64441 1.75066 1.57428 1.23926 1.17423 1.85440 1.21572 1.03443 0.79085 1.01541 1.18489 0.79459 0.90730 0.95605 1.21842 1.02086 1.34747 1.00464 0.93159 1.25708 0.98715 0.94584 0.99547 1.70007 1.19143 1.35881 1.31010 0.85685 0.77871 0.78874 0.79745 1.18846 1.20062 1.20427 0.91627 0.91565 0.94189 0.92994 0.91874 0.90664 0.94149 0.91200 0.85283 0.83686 0.83491 0.84601 0.90028 0.90452 0.75108 0.91056 0.91202 0.90702 0.95596 0.96829 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.84 71.98 0.71 -2.97 16 2 C 0.06 1.41 5.26 86.30 0.45 1.87 16 3 N -0.52 -11.60 3.87 -720.07 -2.79 -14.39 16 4 C 0.03 0.55 9.05 127.69 1.16 1.71 16 5 C 0.10 2.03 4.65 38.21 0.18 2.21 16 6 C -0.16 -2.69 8.70 22.40 0.19 -2.50 16 7 C -0.10 -1.51 10.04 22.25 0.22 -1.29 16 8 C -0.13 -1.88 10.04 22.29 0.22 -1.65 16 9 C -0.11 -1.98 9.66 22.25 0.22 -1.77 16 10 C -0.09 -2.02 5.29 -19.73 -0.10 -2.12 16 11 C 0.17 4.47 6.00 85.63 0.51 4.98 16 12 N -1.11 -34.74 6.05 -190.80 -1.15 -35.90 16 13 S 2.80 114.77 6.10 -56.49 -0.34 114.43 16 14 O -1.01 -51.15 17.11 -128.00 -2.19 -53.34 16 15 O -1.01 -42.29 16.21 -128.00 -2.07 -44.36 16 16 N -1.00 -42.44 3.23 -543.24 -1.75 -44.19 16 17 C 0.09 3.04 10.68 127.77 1.36 4.40 16 18 C 0.28 14.56 5.08 85.63 0.43 14.99 16 19 C -0.55 -31.93 9.38 25.60 0.24 -31.69 16 20 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 21 C 0.01 0.81 5.46 84.65 0.46 1.28 16 22 N -0.92 -54.41 13.29 21.45 0.28 -54.12 16 23 Si 0.95 45.25 29.54 68.60 2.03 47.28 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 27 H 0.06 1.45 6.55 -2.39 -0.02 1.43 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 0.95 7.47 -2.39 -0.02 0.93 16 31 H 0.06 1.53 8.06 -2.39 -0.02 1.51 16 32 H 0.07 1.42 6.47 -2.39 -0.02 1.40 16 33 H 0.04 0.62 7.48 -2.39 -0.02 0.61 16 34 H 0.07 1.26 8.13 -2.38 -0.02 1.24 16 35 H 0.13 1.90 7.16 -2.91 -0.02 1.87 16 36 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 38 H 0.14 2.28 8.04 -2.91 -0.02 2.25 16 39 H 0.08 1.99 7.62 -2.39 -0.02 1.97 16 40 H 0.08 2.01 7.80 -2.39 -0.02 1.99 16 41 H 0.41 12.51 8.64 -96.75 -0.84 11.68 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 44 H 0.07 2.39 7.02 -2.39 -0.02 2.38 16 45 H 0.03 1.37 8.11 -2.39 -0.02 1.35 16 46 H 0.01 0.77 7.61 -2.39 -0.02 0.75 16 47 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -72.94 396.74 -1.60 -74.54 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.13 Total: 22.62 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 6.26 Total: -12.56 kcal Atomic # 7 Polarization: -143.20 SS G_CDS: -5.41 Total: -148.61 kcal Atomic # 8 Polarization: -93.44 SS G_CDS: -4.26 Total: -97.70 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 114.77 SS G_CDS: -0.34 Total: 114.43 kcal Total: -72.94 -1.60 -74.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730269132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.381 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds