Wall clock time and date at job start Wed Apr 1 2020 01:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29862 * 120.00070 * 2 1 4 4 N 1.40103 * 119.99888 * 0.02562 * 3 2 1 5 5 C 1.38531 * 119.99954 * 180.02562 * 4 3 2 6 6 C 1.39718 * 120.48781 * 179.97438 * 5 4 3 7 7 C 1.38104 * 118.48071 * 179.97438 * 6 5 4 8 8 N 1.32521 * 119.29621 * 359.97438 * 7 6 5 9 9 C 1.32488 * 120.94140 * 0.02562 * 8 7 6 10 10 N 1.38403 * 119.17277 * 179.97438 * 9 8 7 11 11 C 1.46495 * 119.99972 * 359.97438 * 10 9 8 12 12 C 1.46496 * 119.99744 * 179.97438 * 10 9 8 13 13 N 1.32451 * 121.65252 * 0.26977 * 9 8 7 14 14 C 1.47343 * 120.00208 * 179.97438 * 2 1 3 15 15 C 1.39814 * 120.08662 * 359.72744 * 14 2 1 16 16 C 1.37722 * 119.91075 * 179.76036 * 15 14 2 17 17 C 1.39072 * 120.08903 * 0.49475 * 16 15 14 18 18 O 1.35659 * 119.91653 * 179.74170 * 17 16 15 19 19 C 1.34805 * 117.00608 * 174.46599 * 18 17 16 20 20 H 1.07998 * 120.00023 * 5.05818 * 19 18 17 21 21 C 1.38618 * 120.00253 * 185.05763 * 19 18 17 22 22 N 1.31578 * 120.00131 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47232 * 89.99581 * 23 21 19 25 25 H 1.48497 * 109.47205 * 209.99858 * 23 21 19 26 26 H 1.48499 * 109.46999 * 329.99830 * 23 21 19 27 27 C 1.39076 * 120.17581 * 359.75591 * 17 16 15 28 28 C 1.37719 * 120.08943 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47231 * 90.00049 * 1 2 3 30 30 H 1.09000 * 109.47070 * 210.00038 * 1 2 3 31 31 H 1.09006 * 109.47226 * 330.00188 * 1 2 3 32 32 H 0.97000 * 120.00064 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.76221 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.35121 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47219 * 269.99903 * 11 10 9 36 36 H 1.08998 * 109.46941 * 149.99899 * 11 10 9 37 37 H 1.09001 * 109.47264 * 29.99790 * 11 10 9 38 38 H 1.09001 * 109.46828 * 180.02562 * 12 10 9 39 39 H 1.09003 * 109.47508 * 300.00320 * 12 10 9 40 40 H 1.09002 * 109.47241 * 60.00266 * 12 10 9 41 41 H 1.08006 * 120.04671 * 359.97438 * 15 14 2 42 42 H 1.07999 * 119.95424 * 180.23095 * 16 15 14 43 43 H 0.96996 * 120.00179 * 180.02562 * 22 21 19 44 44 H 1.08003 * 119.95460 * 179.97438 * 27 17 16 45 45 H 1.08002 * 120.04809 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1563 1.1246 0.0000 4 7 1.4558 2.3379 0.0005 5 6 2.1484 3.5377 0.0000 6 6 1.4602 4.7536 0.0000 7 6 2.1922 5.9247 0.0000 8 7 3.5159 5.8620 0.0005 9 6 4.1426 4.6947 0.0005 10 7 5.5264 4.6719 0.0005 11 6 6.2797 5.9284 0.0000 12 6 6.2379 3.3913 0.0011 13 7 3.4780 3.5490 -0.0053 14 6 2.2437 -1.2760 0.0006 15 6 1.5466 -2.4879 0.0069 16 6 2.2388 -3.6785 0.0024 17 6 3.6296 -3.6763 0.0020 18 8 4.3079 -4.8511 0.0029 19 6 5.6493 -4.7835 -0.1134 20 1 6.1430 -3.8231 -0.1195 21 6 6.3948 -5.9468 -0.2250 22 7 5.7934 -7.1170 -0.2171 23 14 8.2536 -5.8531 -0.3854 24 1 8.8691 -5.8831 0.9656 25 1 8.7411 -7.0108 -1.1773 26 1 8.6281 -4.5908 -1.0720 27 6 4.3268 -2.4730 0.0010 28 6 3.6419 -1.2782 0.0010 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.4858 2.3380 0.0005 33 1 0.3805 4.7771 0.0000 34 1 1.6911 6.8814 0.0004 35 1 6.4665 6.2396 -1.0278 36 1 7.2298 5.7826 0.5139 37 1 5.7031 6.6979 0.5134 38 1 7.3127 3.5729 0.0015 39 1 5.9652 2.8245 0.8913 40 1 5.9652 2.8238 -0.8886 41 1 0.4665 -2.4904 0.0117 42 1 1.7010 -4.6150 0.0035 43 1 6.3151 -7.9310 -0.2948 44 1 5.4068 -2.4755 0.0011 45 1 4.1840 -0.3441 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739418297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:03 Heat of formation + Delta-G solvation = 115.937664 kcal Electronic energy + Delta-G solvation = -27922.400746 eV Core-core repulsion = 23942.808587 eV Total energy + Delta-G solvation = -3979.592159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83611 -39.20870 -38.02547 -36.90133 -36.13435 -34.11315 -32.50484 -32.16928 -30.69153 -30.34264 -28.50623 -28.14959 -27.86097 -25.79273 -25.50767 -23.60483 -22.14958 -21.82487 -21.77573 -19.59943 -18.27336 -18.05360 -17.26741 -16.98734 -16.43997 -15.78601 -15.74085 -15.29479 -14.81084 -14.49589 -14.46596 -14.40981 -14.20301 -13.90149 -13.84610 -13.71698 -13.61823 -12.88338 -12.64183 -12.52467 -12.48049 -12.42293 -12.23087 -11.99791 -11.76677 -11.53734 -11.12316 -11.06649 -10.83189 -10.71180 -10.50824 -10.50284 -10.26035 -9.91999 -9.37914 -8.98942 -8.97062 -8.39935 -8.27921 -7.86838 -7.03346 -6.57325 -4.13435 1.15340 1.30022 1.77853 2.21045 2.44927 2.76924 2.92665 3.09008 3.11885 3.14730 3.88497 4.05781 4.18523 4.55402 4.57895 4.68010 4.80043 4.98246 4.99812 5.04666 5.14609 5.19068 5.22636 5.28982 5.32111 5.38297 5.55137 5.64167 5.65315 5.69716 5.76398 5.85227 5.90086 6.04151 6.11533 6.22693 6.38383 6.57204 6.76153 6.77366 6.87046 6.96456 7.16496 7.19227 7.30046 7.34610 7.47260 7.69985 7.88471 8.24079 8.56935 8.88067 9.55277 10.59669 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.002508 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.779901 B =11159.411733 C =13562.966328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.161 3.839 3 N -0.251 5.251 4 N -0.562 5.562 5 C 0.495 3.505 6 C -0.349 4.349 7 C 0.213 3.787 8 N -0.608 5.608 9 C 0.593 3.407 10 N -0.594 5.594 11 C 0.106 3.894 12 C 0.109 3.891 13 N -0.585 5.585 14 C -0.159 4.159 15 C -0.045 4.045 16 C -0.198 4.198 17 C 0.167 3.833 18 O -0.167 6.167 19 C -0.391 4.391 20 H 0.096 0.904 21 C 0.041 3.959 22 N -0.856 5.856 23 Si 0.943 3.057 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.265 1.265 27 C -0.242 4.242 28 C -0.021 4.021 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.392 0.608 33 H 0.136 0.864 34 H 0.164 0.836 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.130 0.870 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 21.675 0.371 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.058 5.058 4 N -0.285 5.285 5 C 0.249 3.751 6 C -0.381 4.381 7 C 0.049 3.951 8 N -0.335 5.335 9 C 0.236 3.764 10 N -0.311 5.311 11 C -0.037 4.037 12 C -0.034 4.034 13 N -0.316 5.316 14 C -0.163 4.163 15 C -0.065 4.065 16 C -0.217 4.217 17 C 0.111 3.889 18 O -0.068 6.068 19 C -0.467 4.467 20 H 0.114 0.886 21 C -0.165 4.165 22 N -0.490 5.490 23 Si 0.767 3.233 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.190 1.190 27 C -0.262 4.262 28 C -0.041 4.041 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.234 0.766 33 H 0.153 0.847 34 H 0.181 0.819 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.148 0.852 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.802 21.582 0.365 22.113 hybrid contribution -1.316 -0.227 -0.084 1.338 sum -6.118 21.355 0.281 22.216 Atomic orbital electron populations 1.21301 0.93315 1.03516 1.03337 1.23278 0.92866 0.91863 0.94697 1.75272 1.22458 0.90078 1.17976 1.45317 1.06328 1.00952 1.75900 1.17730 0.87685 0.83979 0.85659 1.21682 1.01712 0.92403 1.22294 1.22463 0.88123 0.97589 0.86953 1.67891 1.10888 1.27322 1.27384 1.18929 0.86531 0.83898 0.87046 1.45863 1.00182 1.07640 1.77465 1.21601 0.95357 0.85294 1.01443 1.21573 0.95094 0.83733 1.02966 1.67431 1.07196 1.28889 1.28047 1.17614 0.92714 0.88771 1.17239 1.20705 0.98324 0.90752 0.96736 1.20086 0.91417 0.98006 1.12208 1.19574 0.91704 0.86404 0.91258 1.83931 1.21250 1.25286 1.76357 1.21427 0.78380 0.94981 1.51897 0.88630 1.25349 1.00818 0.94125 0.96183 1.70043 1.36624 0.97590 1.44727 0.85673 0.80185 0.78609 0.78819 1.19720 1.20146 1.18968 1.21122 1.00804 0.91759 1.12501 1.20983 0.92781 0.97373 0.93010 0.89973 0.89333 0.92098 0.76565 0.84658 0.81875 0.93305 0.91528 0.90230 0.91003 0.91960 0.91943 0.86439 0.86074 0.91770 0.85219 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.04 36.00 0.33 -1.25 16 2 C 0.16 2.36 7.10 -79.72 -0.57 1.79 16 3 N -0.25 -4.01 10.22 35.10 0.36 -3.65 16 4 N -0.56 -7.48 6.26 31.25 0.20 -7.29 16 5 C 0.50 6.97 7.64 -154.78 -1.18 5.79 16 6 C -0.35 -3.75 10.03 -39.08 -0.39 -4.14 16 7 C 0.21 2.23 11.28 -17.30 -0.20 2.03 16 8 N -0.61 -7.94 9.11 -14.01 -0.13 -8.07 16 9 C 0.59 8.65 8.18 -322.87 -2.64 6.01 16 10 N -0.59 -7.42 3.37 -191.92 -0.65 -8.07 16 11 C 0.11 0.96 10.41 59.84 0.62 1.59 16 12 C 0.11 1.25 10.13 59.84 0.61 1.86 16 13 N -0.58 -9.34 9.18 -13.14 -0.12 -9.46 16 14 C -0.16 -2.74 5.87 -105.01 -0.62 -3.36 16 15 C -0.04 -0.74 9.36 -39.18 -0.37 -1.10 16 16 C -0.20 -3.90 9.97 -39.46 -0.39 -4.29 16 17 C 0.17 3.86 6.65 -38.96 -0.26 3.60 16 18 O -0.17 -4.58 9.75 0.40 0.00 -4.57 16 19 C -0.39 -10.54 9.48 30.87 0.29 -10.24 16 20 H 0.10 2.39 5.18 -52.49 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.27 13.67 55.48 0.76 -23.51 16 23 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.24 -5.17 9.15 -39.46 -0.36 -5.53 16 28 C -0.02 -0.41 9.57 -39.18 -0.37 -0.78 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.81 6.45 -51.93 -0.34 0.48 16 31 H 0.06 0.51 6.35 -51.93 -0.33 0.18 16 32 H 0.39 3.94 6.45 -182.60 -1.18 2.76 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.46 7.92 -51.93 -0.41 0.04 16 37 H 0.08 0.75 7.33 -51.93 -0.38 0.37 16 38 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.12 1.49 6.34 -52.48 -0.33 1.16 16 42 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.13 2.77 5.62 -52.48 -0.29 2.47 16 45 H 0.12 2.25 7.55 -52.49 -0.40 1.85 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -33.18 383.81 -10.84 -44.03 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.43 Total: 6.97 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -5.60 Total: -7.03 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.42 Total: -60.04 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: 0.00 Total: -4.57 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.18 -10.84 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739418297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.965 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds