Wall clock time and date at job start Wed Apr 1 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29862 * 120.00070 * 2 1 4 4 N 1.40103 * 119.99888 * 0.02562 * 3 2 1 5 5 C 1.38531 * 119.99954 * 180.02562 * 4 3 2 6 6 C 1.39718 * 120.48781 * 179.97438 * 5 4 3 7 7 C 1.38104 * 118.48071 * 179.97438 * 6 5 4 8 8 N 1.32521 * 119.29621 * 359.97438 * 7 6 5 9 9 C 1.32488 * 120.94140 * 0.02562 * 8 7 6 10 10 N 1.38403 * 119.17277 * 179.97438 * 9 8 7 11 11 C 1.46495 * 119.99972 * 359.97438 * 10 9 8 12 12 C 1.46496 * 119.99744 * 179.97438 * 10 9 8 13 13 N 1.32451 * 121.65252 * 0.26977 * 9 8 7 14 14 C 1.47343 * 120.00208 * 179.97438 * 2 1 3 15 15 C 1.39814 * 120.08662 * 359.72744 * 14 2 1 16 16 C 1.37722 * 119.91075 * 179.76036 * 15 14 2 17 17 C 1.39072 * 120.08903 * 0.49475 * 16 15 14 18 18 O 1.35659 * 119.91653 * 179.74170 * 17 16 15 19 19 C 1.34805 * 117.00608 * 174.46599 * 18 17 16 20 20 H 1.07998 * 120.00023 * 5.05818 * 19 18 17 21 21 C 1.38618 * 120.00253 * 185.05763 * 19 18 17 22 22 N 1.31578 * 120.00131 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47232 * 89.99581 * 23 21 19 25 25 H 1.48497 * 109.47205 * 209.99858 * 23 21 19 26 26 H 1.48499 * 109.46999 * 329.99830 * 23 21 19 27 27 C 1.39076 * 120.17581 * 359.75591 * 17 16 15 28 28 C 1.37719 * 120.08943 * 0.02562 * 27 17 16 29 29 H 1.09001 * 109.47231 * 90.00049 * 1 2 3 30 30 H 1.09000 * 109.47070 * 210.00038 * 1 2 3 31 31 H 1.09006 * 109.47226 * 330.00188 * 1 2 3 32 32 H 0.97000 * 120.00064 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.76221 * 359.97438 * 6 5 4 34 34 H 1.07999 * 120.35121 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47219 * 269.99903 * 11 10 9 36 36 H 1.08998 * 109.46941 * 149.99899 * 11 10 9 37 37 H 1.09001 * 109.47264 * 29.99790 * 11 10 9 38 38 H 1.09001 * 109.46828 * 180.02562 * 12 10 9 39 39 H 1.09003 * 109.47508 * 300.00320 * 12 10 9 40 40 H 1.09002 * 109.47241 * 60.00266 * 12 10 9 41 41 H 1.08006 * 120.04671 * 359.97438 * 15 14 2 42 42 H 1.07999 * 119.95424 * 180.23095 * 16 15 14 43 43 H 0.96996 * 120.00179 * 180.02562 * 22 21 19 44 44 H 1.08003 * 119.95460 * 179.97438 * 27 17 16 45 45 H 1.08002 * 120.04809 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1563 1.1246 0.0000 4 7 1.4558 2.3379 0.0005 5 6 2.1484 3.5377 0.0000 6 6 1.4602 4.7536 0.0000 7 6 2.1922 5.9247 0.0000 8 7 3.5159 5.8620 0.0005 9 6 4.1426 4.6947 0.0005 10 7 5.5264 4.6719 0.0005 11 6 6.2797 5.9284 0.0000 12 6 6.2379 3.3913 0.0011 13 7 3.4780 3.5490 -0.0053 14 6 2.2437 -1.2760 0.0006 15 6 1.5466 -2.4879 0.0069 16 6 2.2388 -3.6785 0.0024 17 6 3.6296 -3.6763 0.0020 18 8 4.3079 -4.8511 0.0029 19 6 5.6493 -4.7835 -0.1134 20 1 6.1430 -3.8231 -0.1195 21 6 6.3948 -5.9468 -0.2250 22 7 5.7934 -7.1170 -0.2171 23 14 8.2536 -5.8531 -0.3854 24 1 8.8691 -5.8831 0.9656 25 1 8.7411 -7.0108 -1.1773 26 1 8.6281 -4.5908 -1.0720 27 6 4.3268 -2.4730 0.0010 28 6 3.6419 -1.2782 0.0010 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 0.4858 2.3380 0.0005 33 1 0.3805 4.7771 0.0000 34 1 1.6911 6.8814 0.0004 35 1 6.4665 6.2396 -1.0278 36 1 7.2298 5.7826 0.5139 37 1 5.7031 6.6979 0.5134 38 1 7.3127 3.5729 0.0015 39 1 5.9652 2.8245 0.8913 40 1 5.9652 2.8238 -0.8886 41 1 0.4665 -2.4904 0.0117 42 1 1.7010 -4.6150 0.0035 43 1 6.3151 -7.9310 -0.2948 44 1 5.4068 -2.4755 0.0011 45 1 4.1840 -0.3441 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739418297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:12:02 Heat of formation + Delta-G solvation = 97.613145 kcal Electronic energy + Delta-G solvation = -27923.195357 eV Core-core repulsion = 23942.808587 eV Total energy + Delta-G solvation = -3980.386770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78286 -40.84473 -39.30815 -38.12465 -37.32124 -35.21648 -34.28800 -33.29222 -32.05303 -31.59532 -29.73524 -29.21282 -28.79874 -27.39774 -26.66951 -24.69055 -23.49016 -23.33321 -22.83691 -20.89588 -19.78370 -19.29829 -18.76303 -18.26817 -17.55667 -16.79529 -16.68804 -16.42962 -16.18997 -15.97349 -15.67828 -15.62088 -15.41814 -15.33047 -15.23544 -14.71508 -14.59245 -14.47401 -14.10004 -13.57319 -13.49291 -13.34678 -13.26527 -13.19232 -13.06948 -12.79626 -12.62508 -12.60320 -12.29774 -12.13279 -11.72700 -11.61176 -11.31055 -11.25063 -10.89145 -10.80823 -9.96718 -9.84112 -9.63604 -8.87445 -8.50822 -8.46242 -6.16704 -0.05016 0.40477 0.59078 0.61661 1.35554 1.41067 1.49335 1.52333 1.67166 1.85078 2.16442 2.85755 3.09517 3.19599 3.25548 3.45145 3.62547 3.73060 3.92495 4.07317 4.14293 4.20633 4.30993 4.40923 4.46947 4.49562 4.50717 4.53458 4.66238 4.72919 4.76838 4.77457 4.90984 4.92811 4.96578 5.01329 5.09752 5.25128 5.30575 5.32472 5.58371 5.67982 5.70027 5.84808 5.94195 6.00052 6.11584 6.24241 6.52416 6.94596 7.21504 7.59068 7.71638 8.71952 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.002508 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.779901 B =11159.411733 C =13562.966328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 N -0.276 5.276 4 N -0.554 5.554 5 C 0.466 3.534 6 C -0.335 4.335 7 C 0.210 3.790 8 N -0.616 5.616 9 C 0.570 3.430 10 N -0.602 5.602 11 C 0.106 3.894 12 C 0.115 3.885 13 N -0.622 5.622 14 C -0.137 4.137 15 C -0.027 4.027 16 C -0.202 4.202 17 C 0.132 3.868 18 O -0.220 6.220 19 C -0.415 4.415 20 H 0.101 0.899 21 C -0.018 4.018 22 N -0.914 5.914 23 Si 1.016 2.984 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.255 1.255 27 C -0.249 4.249 28 C -0.032 4.032 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.410 0.590 33 H 0.173 0.827 34 H 0.207 0.793 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.170 0.830 42 H 0.129 0.871 43 H 0.274 0.726 44 H 0.118 0.882 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 25.436 0.343 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.038 4.038 3 N -0.083 5.083 4 N -0.280 5.280 5 C 0.222 3.778 6 C -0.366 4.366 7 C 0.046 3.954 8 N -0.343 5.343 9 C 0.213 3.787 10 N -0.320 5.320 11 C -0.036 4.036 12 C -0.028 4.028 13 N -0.354 5.354 14 C -0.141 4.141 15 C -0.047 4.047 16 C -0.222 4.222 17 C 0.079 3.921 18 O -0.125 6.125 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.216 4.216 22 N -0.552 5.552 23 Si 0.835 3.165 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.179 1.179 27 C -0.268 4.268 28 C -0.052 4.052 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.255 0.745 33 H 0.190 0.810 34 H 0.224 0.776 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.188 0.812 42 H 0.147 0.853 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.100 25.426 0.341 26.401 hybrid contribution -0.929 -0.873 -0.061 1.277 sum -8.029 24.553 0.280 25.834 Atomic orbital electron populations 1.21393 0.89295 1.05359 1.05037 1.23289 0.95272 0.90186 0.95078 1.75118 1.24908 0.91510 1.16782 1.45162 1.07012 0.99776 1.76077 1.18258 0.87707 0.85158 0.86702 1.22052 1.03475 0.90890 1.20181 1.23271 0.87365 0.99396 0.85402 1.67987 1.12327 1.26514 1.27466 1.19286 0.87404 0.84157 0.87872 1.46167 0.99985 1.08677 1.77125 1.21740 0.95886 0.83918 1.02052 1.21505 0.96834 0.83506 1.00973 1.67367 1.08668 1.30147 1.29229 1.18040 0.92067 0.90851 1.13094 1.21160 1.00680 0.88807 0.94052 1.20432 0.90203 0.99891 1.11647 1.20123 0.93202 0.86067 0.92689 1.83909 1.21448 1.27174 1.79986 1.21821 0.79019 0.95604 1.52631 0.88155 1.26542 1.05962 0.93465 0.95650 1.70171 1.38621 0.98397 1.47973 0.84626 0.73652 0.79025 0.79210 1.18754 1.19396 1.17858 1.21130 1.00510 0.92296 1.12898 1.21069 0.94151 0.96378 0.93624 0.88124 0.87801 0.90052 0.74527 0.80978 0.77610 0.92779 0.89187 0.90644 0.87820 0.93871 0.93985 0.81242 0.85324 0.91654 0.86414 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.04 71.24 0.64 -1.67 16 2 C 0.15 3.96 7.10 45.25 0.32 4.28 16 3 N -0.28 -8.30 10.22 -42.88 -0.44 -8.74 16 4 N -0.55 -13.24 6.26 -55.05 -0.34 -13.58 16 5 C 0.47 12.17 7.64 133.20 1.02 13.19 16 6 C -0.34 -6.00 10.03 22.60 0.23 -5.77 16 7 C 0.21 3.66 11.28 84.56 0.95 4.62 16 8 N -0.62 -14.91 9.11 -198.25 -1.81 -16.72 16 9 C 0.57 16.22 8.18 261.51 2.14 18.36 16 10 N -0.60 -14.72 3.37 -761.10 -2.57 -17.29 16 11 C 0.11 1.77 10.41 127.77 1.33 3.10 16 12 C 0.11 2.66 10.13 127.77 1.29 3.95 16 13 N -0.62 -19.54 9.18 -195.48 -1.79 -21.33 16 14 C -0.14 -4.46 5.87 -20.12 -0.12 -4.58 16 15 C -0.03 -0.82 9.36 22.53 0.21 -0.61 16 16 C -0.20 -7.98 9.97 22.35 0.22 -7.76 16 17 C 0.13 6.40 6.65 22.67 0.15 6.55 16 18 O -0.22 -12.93 9.75 -21.48 -0.21 -13.14 16 19 C -0.41 -23.90 9.48 67.91 0.64 -23.25 16 20 H 0.10 5.38 5.18 -2.91 -0.02 5.37 16 21 C -0.02 -0.99 5.49 84.82 0.47 -0.53 16 22 N -0.91 -55.04 13.67 21.61 0.30 -54.75 16 23 Si 1.02 42.53 29.55 68.60 2.03 44.56 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 26 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 27 C -0.25 -11.16 9.15 22.35 0.20 -10.95 16 28 C -0.03 -1.24 9.57 22.53 0.22 -1.02 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.29 6.45 -2.39 -0.02 1.28 16 31 H 0.08 0.94 6.35 -2.38 -0.02 0.92 16 32 H 0.41 6.59 6.45 -213.32 -1.38 5.21 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.21 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.05 7.92 -2.39 -0.02 1.03 16 37 H 0.07 1.32 7.33 -2.39 -0.02 1.30 16 38 H 0.10 1.64 7.79 -2.39 -0.02 1.63 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.17 3.41 6.34 -2.91 -0.02 3.39 16 42 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.12 5.43 5.62 -2.91 -0.02 5.41 16 45 H 0.12 4.66 7.55 -2.91 -0.02 4.63 16 Total: -1.00 -80.16 383.81 4.75 -75.40 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.33 Total: 27.67 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 9.92 Total: -2.09 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -6.65 Total: -132.40 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.21 Total: -13.14 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -80.16 4.75 -75.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739418297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.017 kcal (2) G-P(sol) polarization free energy of solvation -80.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds