Wall clock time and date at job start Wed Apr 1 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47013 * 2 1 4 4 C 1.46494 * 120.00316 * 275.30146 * 3 2 1 5 5 C 1.50702 * 109.47105 * 270.00050 * 4 3 2 6 6 H 1.07999 * 119.99821 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99983 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99835 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99937 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47281 * 90.00169 * 9 7 5 11 11 H 1.48500 * 109.47026 * 209.99529 * 9 7 5 12 12 H 1.48494 * 109.47298 * 329.99679 * 9 7 5 13 13 C 1.34782 * 119.99996 * 95.30128 * 3 2 1 14 14 O 1.21662 * 120.00355 * 185.77270 * 13 3 2 15 15 C 1.46921 * 119.99772 * 5.76790 * 13 3 2 16 16 C 1.35296 * 120.00285 * 76.83645 * 15 13 3 17 17 C 1.47103 * 119.99571 * 8.45079 * 16 15 13 18 18 C 1.39877 * 120.17320 * 216.08047 * 17 16 15 19 19 C 1.37881 * 119.81884 * 179.70409 * 18 17 16 20 20 C 1.38406 * 120.17640 * 0.57342 * 19 18 17 21 21 C 1.38400 * 120.35259 * 359.72062 * 20 19 18 22 22 C 1.37881 * 120.17766 * 359.97438 * 21 20 19 23 23 N 1.40145 * 119.99929 * 256.83558 * 15 13 3 24 24 N 1.40603 * 127.38514 * 184.17831 * 23 15 13 25 25 N 1.28946 * 106.65368 * 179.86888 * 24 23 15 26 26 N 1.28421 * 110.20685 * 0.40553 * 25 24 23 27 27 C 1.30763 * 110.63992 * 359.73613 * 26 25 24 28 28 C 1.50697 * 126.36332 * 180.02562 * 27 26 25 29 29 H 1.08993 * 109.47386 * 300.00081 * 1 2 3 30 30 H 1.09004 * 109.46799 * 59.99911 * 1 2 3 31 31 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47038 * 240.00104 * 2 1 3 33 33 H 1.09004 * 109.46799 * 120.00089 * 2 1 3 34 34 H 1.09005 * 109.46963 * 30.00042 * 4 3 2 35 35 H 1.09005 * 109.47290 * 149.99955 * 4 3 2 36 36 H 0.97003 * 119.99949 * 179.97438 * 8 7 5 37 37 H 1.07995 * 120.00213 * 188.18088 * 16 15 13 38 38 H 1.08003 * 120.08914 * 359.97438 * 18 17 16 39 39 H 1.08009 * 119.91094 * 180.29619 * 19 18 17 40 40 H 1.07995 * 119.82204 * 179.70261 * 20 19 18 41 41 H 1.08007 * 119.91440 * 180.02562 * 21 20 19 42 42 H 1.08002 * 120.09166 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47181 * 270.07686 * 28 27 26 44 44 H 1.08998 * 109.47494 * 30.07624 * 28 27 26 45 45 H 1.09000 * 109.47225 * 150.07993 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1520 2.1109 -1.2632 5 6 3.5317 1.8896 -1.8277 6 1 4.2384 1.2679 -1.2981 7 6 3.8917 2.4807 -3.0201 8 7 5.0959 2.2880 -3.5124 9 14 2.6695 3.5566 -3.9356 10 1 2.8112 4.9635 -3.4816 11 1 2.9366 3.4781 -5.3943 12 1 1.2894 3.0838 -3.6589 13 6 2.3447 1.9806 1.1623 14 8 2.6494 3.1584 1.1748 15 6 2.3322 1.2117 2.4141 16 6 3.3444 0.3586 2.6942 17 6 4.5439 0.3359 1.8430 18 6 5.1986 -0.8725 1.5829 19 6 6.3188 -0.8862 0.7791 20 6 6.8025 0.2931 0.2396 21 6 6.1638 1.4936 0.4972 22 6 5.0389 1.5234 1.2939 23 7 1.2720 1.3619 3.3182 24 7 1.1422 0.7712 4.5875 25 7 0.0203 1.1813 5.0731 26 7 -0.5672 1.9589 4.2367 27 6 0.1531 2.1004 3.1545 28 6 -0.1996 2.9332 1.9491 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.4071 1.7494 -1.9722 35 1 1.9984 3.1754 -1.0859 36 1 5.3491 2.7036 -4.3515 37 1 3.2735 -0.3025 3.5452 38 1 4.8252 -1.7929 2.0071 39 1 6.8227 -1.8191 0.5734 40 1 7.6830 0.2764 -0.3853 41 1 6.5472 2.4096 0.0722 42 1 4.5414 2.4609 1.4936 43 1 -0.7590 2.3249 1.2383 44 1 -0.8089 3.7820 2.2595 45 1 0.7141 3.2949 1.4775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764869600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:39 Heat of formation + Delta-G solvation = 145.356012 kcal Electronic energy + Delta-G solvation = -31338.195245 eV Core-core repulsion = 27359.878761 eV Total energy + Delta-G solvation = -3978.316484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.22650 -40.34766 -38.50878 -36.04695 -35.81118 -33.70436 -32.90880 -32.55598 -30.66131 -30.58442 -29.60001 -28.59671 -27.80058 -25.25288 -23.58136 -23.23415 -22.64038 -22.22380 -21.54109 -20.39050 -19.12842 -17.43915 -17.11805 -16.94657 -16.59689 -16.08735 -15.92214 -15.09176 -14.97412 -14.66201 -14.42852 -14.13071 -13.86811 -13.78281 -13.33311 -13.14204 -13.09111 -12.97435 -12.74582 -12.64998 -12.46945 -12.39253 -12.16322 -12.08711 -11.76598 -11.64799 -11.16588 -11.11279 -11.02737 -10.84294 -10.69787 -10.64556 -10.32062 -10.15722 -9.84678 -9.66157 -9.45793 -8.72315 -8.53049 -8.14224 -7.98138 -6.21605 -4.21407 0.19890 1.32920 1.55602 1.79705 2.13268 2.27945 2.81116 3.17196 3.22285 3.25654 3.35324 3.87169 4.13382 4.19856 4.26779 4.59514 4.63625 4.98650 5.02644 5.10678 5.13769 5.22506 5.26803 5.29888 5.31475 5.40743 5.46303 5.49744 5.59975 5.72160 5.76902 5.84825 5.88113 5.93437 6.01322 6.17567 6.21473 6.38533 6.39900 6.44649 6.66769 6.70344 6.82595 6.92309 6.97821 7.29701 7.41575 7.73294 8.21816 8.38125 8.40632 8.85593 9.37578 10.90251 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.005601 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.855559 B = 4998.063614 C = 6745.168412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.561 5.561 4 C 0.212 3.788 5 C -0.534 4.534 6 H 0.090 0.910 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.867 3.133 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.568 3.432 14 O -0.524 6.524 15 C 0.035 3.965 16 C -0.025 4.025 17 C -0.093 4.093 18 C -0.095 4.095 19 C -0.129 4.129 20 C -0.091 4.091 21 C -0.087 4.087 22 C -0.082 4.082 23 N -0.308 5.308 24 N -0.089 5.089 25 N -0.039 5.039 26 N -0.334 5.334 27 C 0.261 3.739 28 C -0.113 4.113 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.264 0.736 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -5.794 7.039 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 N -0.289 5.289 4 C 0.092 3.908 5 C -0.572 4.572 6 H 0.108 0.892 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.352 3.648 14 O -0.402 6.402 15 C -0.061 4.061 16 C -0.048 4.048 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.147 4.147 20 C -0.109 4.109 21 C -0.105 4.105 22 C -0.100 4.100 23 N -0.099 5.099 24 N -0.074 5.074 25 N -0.033 5.033 26 N -0.186 5.186 27 C -0.014 4.014 28 C -0.172 4.172 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.776 -5.622 8.155 10.601 hybrid contribution -0.190 0.607 -1.440 1.574 sum -3.965 -5.015 6.716 9.272 Atomic orbital electron populations 1.22285 0.96255 1.02283 1.02182 1.21609 0.93741 0.83369 1.03835 1.47960 1.60305 1.13846 1.06832 1.19885 0.98815 0.92794 0.79256 1.21351 0.97107 1.32065 1.06712 0.89250 1.24767 0.94970 0.95743 0.96888 1.69866 1.18542 1.43976 1.20334 0.87007 0.82150 0.81926 0.79535 1.19926 1.21110 1.19142 1.17236 0.78635 0.86489 0.82486 1.90830 1.48368 1.14869 1.86145 1.20036 0.89530 1.04340 0.92196 1.22191 0.90604 0.93716 0.98245 1.18574 0.95389 0.94680 1.00761 1.21073 0.95451 0.96198 0.98636 1.20952 0.96933 0.98137 0.98638 1.21310 0.99615 0.92577 0.97443 1.21048 0.95001 0.98547 0.95931 1.21881 0.95644 0.97964 0.94504 1.48702 1.15065 1.32668 1.13443 1.82595 1.15467 1.18860 0.90450 1.77967 0.99766 1.05434 1.20121 1.74477 1.26217 1.17858 1.00050 1.25857 0.83476 0.93750 0.98358 1.21182 1.06472 0.98795 0.90738 0.93422 0.91461 0.91460 0.88919 0.91181 0.94560 0.94060 0.92554 0.83545 0.86173 0.86189 0.86123 0.85559 0.84395 0.88062 0.87549 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.22 37.16 0.38 -1.66 16 2 C 0.10 1.40 6.09 -4.04 -0.02 1.38 16 3 N -0.56 -9.76 2.46 -176.51 -0.43 -10.19 16 4 C 0.21 4.39 4.30 -5.20 -0.02 4.36 16 5 C -0.53 -13.06 9.94 -34.44 -0.34 -13.40 16 6 H 0.09 2.34 6.44 -52.49 -0.34 2.00 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -24.40 13.96 55.43 0.77 -23.63 16 9 Si 0.87 19.43 27.47 -169.99 -4.67 14.76 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -5.60 6.54 56.52 0.37 -5.23 16 13 C 0.57 10.03 1.97 -12.74 -0.03 10.01 16 14 O -0.52 -10.74 13.10 5.22 0.07 -10.67 16 15 C 0.04 0.56 4.98 -81.59 -0.41 0.15 16 16 C -0.02 -0.35 8.45 -37.04 -0.31 -0.67 16 17 C -0.09 -1.43 5.44 -105.07 -0.57 -2.01 16 18 C -0.10 -1.29 9.80 -39.10 -0.38 -1.68 16 19 C -0.13 -1.78 10.03 -39.65 -0.40 -2.18 16 20 C -0.09 -1.44 10.04 -39.46 -0.40 -1.83 16 21 C -0.09 -1.55 9.06 -39.65 -0.36 -1.91 16 22 C -0.08 -1.46 7.75 -39.10 -0.30 -1.77 16 23 N -0.31 -4.89 3.85 -6.71 -0.03 -4.92 16 24 N -0.09 -1.45 13.30 60.35 0.80 -0.64 16 25 N -0.04 -0.65 13.39 60.35 0.81 0.16 16 26 N -0.33 -5.46 12.16 32.75 0.40 -5.06 16 27 C 0.26 4.00 7.81 -155.18 -1.21 2.79 16 28 C -0.11 -1.47 9.33 36.00 0.34 -1.13 16 29 H 0.05 0.57 5.75 -51.93 -0.30 0.27 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 33 H 0.07 0.95 5.83 -51.93 -0.30 0.64 16 34 H 0.04 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.04 0.91 6.78 -51.93 -0.35 0.55 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.15 1.81 7.74 -52.49 -0.41 1.41 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 2.32 8.06 -52.48 -0.42 1.89 16 42 H 0.14 2.72 5.13 -52.49 -0.27 2.45 16 43 H 0.10 1.15 6.37 -51.93 -0.33 0.82 16 44 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.12 1.78 4.19 -51.93 -0.22 1.56 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -29.12 369.54 -6.28 -35.40 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.43 Total: 6.81 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.14 Total: -7.59 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 2.32 Total: -44.28 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.67 Total: 14.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.12 -6.28 -35.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764869600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.759 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds