Wall clock time and date at job start Wed Apr 1 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47013 * 2 1 4 4 C 1.46494 * 120.00316 * 275.30146 * 3 2 1 5 5 C 1.50702 * 109.47105 * 270.00050 * 4 3 2 6 6 H 1.07999 * 119.99821 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99983 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99835 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99937 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47281 * 90.00169 * 9 7 5 11 11 H 1.48500 * 109.47026 * 209.99529 * 9 7 5 12 12 H 1.48494 * 109.47298 * 329.99679 * 9 7 5 13 13 C 1.34782 * 119.99996 * 95.30128 * 3 2 1 14 14 O 1.21662 * 120.00355 * 185.77270 * 13 3 2 15 15 C 1.46921 * 119.99772 * 5.76790 * 13 3 2 16 16 C 1.35296 * 120.00285 * 76.83645 * 15 13 3 17 17 C 1.47103 * 119.99571 * 8.45079 * 16 15 13 18 18 C 1.39877 * 120.17320 * 216.08047 * 17 16 15 19 19 C 1.37881 * 119.81884 * 179.70409 * 18 17 16 20 20 C 1.38406 * 120.17640 * 0.57342 * 19 18 17 21 21 C 1.38400 * 120.35259 * 359.72062 * 20 19 18 22 22 C 1.37881 * 120.17766 * 359.97438 * 21 20 19 23 23 N 1.40145 * 119.99929 * 256.83558 * 15 13 3 24 24 N 1.40603 * 127.38514 * 184.17831 * 23 15 13 25 25 N 1.28946 * 106.65368 * 179.86888 * 24 23 15 26 26 N 1.28421 * 110.20685 * 0.40553 * 25 24 23 27 27 C 1.30763 * 110.63992 * 359.73613 * 26 25 24 28 28 C 1.50697 * 126.36332 * 180.02562 * 27 26 25 29 29 H 1.08993 * 109.47386 * 300.00081 * 1 2 3 30 30 H 1.09004 * 109.46799 * 59.99911 * 1 2 3 31 31 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47038 * 240.00104 * 2 1 3 33 33 H 1.09004 * 109.46799 * 120.00089 * 2 1 3 34 34 H 1.09005 * 109.46963 * 30.00042 * 4 3 2 35 35 H 1.09005 * 109.47290 * 149.99955 * 4 3 2 36 36 H 0.97003 * 119.99949 * 179.97438 * 8 7 5 37 37 H 1.07995 * 120.00213 * 188.18088 * 16 15 13 38 38 H 1.08003 * 120.08914 * 359.97438 * 18 17 16 39 39 H 1.08009 * 119.91094 * 180.29619 * 19 18 17 40 40 H 1.07995 * 119.82204 * 179.70261 * 20 19 18 41 41 H 1.08007 * 119.91440 * 180.02562 * 21 20 19 42 42 H 1.08002 * 120.09166 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47181 * 270.07686 * 28 27 26 44 44 H 1.08998 * 109.47494 * 30.07624 * 28 27 26 45 45 H 1.09000 * 109.47225 * 150.07993 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1520 2.1109 -1.2632 5 6 3.5317 1.8896 -1.8277 6 1 4.2384 1.2679 -1.2981 7 6 3.8917 2.4807 -3.0201 8 7 5.0959 2.2880 -3.5124 9 14 2.6695 3.5566 -3.9356 10 1 2.8112 4.9635 -3.4816 11 1 2.9366 3.4781 -5.3943 12 1 1.2894 3.0838 -3.6589 13 6 2.3447 1.9806 1.1623 14 8 2.6494 3.1584 1.1748 15 6 2.3322 1.2117 2.4141 16 6 3.3444 0.3586 2.6942 17 6 4.5439 0.3359 1.8430 18 6 5.1986 -0.8725 1.5829 19 6 6.3188 -0.8862 0.7791 20 6 6.8025 0.2931 0.2396 21 6 6.1638 1.4936 0.4972 22 6 5.0389 1.5234 1.2939 23 7 1.2720 1.3619 3.3182 24 7 1.1422 0.7712 4.5875 25 7 0.0203 1.1813 5.0731 26 7 -0.5672 1.9589 4.2367 27 6 0.1531 2.1004 3.1545 28 6 -0.1996 2.9332 1.9491 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.4071 1.7494 -1.9722 35 1 1.9984 3.1754 -1.0859 36 1 5.3491 2.7036 -4.3515 37 1 3.2735 -0.3025 3.5452 38 1 4.8252 -1.7929 2.0071 39 1 6.8227 -1.8191 0.5734 40 1 7.6830 0.2764 -0.3853 41 1 6.5472 2.4096 0.0722 42 1 4.5414 2.4609 1.4936 43 1 -0.7590 2.3249 1.2383 44 1 -0.8089 3.7820 2.2595 45 1 0.7141 3.2949 1.4775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764869600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:38 Heat of formation + Delta-G solvation = 129.262868 kcal Electronic energy + Delta-G solvation = -31338.893096 eV Core-core repulsion = 27359.878761 eV Total energy + Delta-G solvation = -3979.014335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.45576 -41.69517 -39.76755 -37.35120 -37.18000 -34.89517 -34.69384 -33.85250 -31.96433 -31.83749 -30.86058 -29.85869 -29.25565 -26.52928 -25.08923 -24.44646 -23.88448 -23.50447 -22.86813 -21.67595 -20.43557 -18.98236 -18.74037 -18.20671 -17.82920 -17.44657 -17.30568 -16.43918 -16.20618 -16.10297 -15.76509 -15.50557 -15.11570 -14.96321 -14.50199 -14.44561 -14.34755 -14.26643 -14.18115 -13.85501 -13.76782 -13.69920 -13.54841 -13.38063 -13.17969 -12.90303 -12.59578 -12.44794 -12.38387 -12.13828 -12.06308 -12.00718 -11.86530 -11.58407 -11.36853 -11.18664 -10.73838 -10.69413 -9.80429 -9.58467 -9.24683 -8.19340 -6.21456 -1.01002 0.08340 0.31815 0.56201 0.89043 1.05187 1.38118 1.42210 1.46514 1.47425 2.00127 2.38806 2.70887 2.89764 2.95817 3.15541 3.41921 3.44225 3.76558 3.95430 4.00016 4.08369 4.11474 4.22333 4.26621 4.29102 4.34742 4.44204 4.47384 4.52994 4.61996 4.71825 4.78354 4.82860 4.85653 4.89131 4.96705 4.99462 5.15098 5.19788 5.26945 5.46749 5.48571 5.55768 5.57059 5.69484 6.06479 6.31734 6.38598 6.85033 6.95187 7.14384 7.40612 8.94683 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.005601 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.855559 B = 4998.063614 C = 6745.168412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.561 5.561 4 C 0.220 3.780 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.026 3.974 8 N -0.933 5.933 9 Si 0.920 3.080 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.238 1.238 13 C 0.574 3.426 14 O -0.560 6.560 15 C 0.024 3.976 16 C -0.005 4.005 17 C -0.099 4.099 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.115 4.115 22 C -0.100 4.100 23 N -0.309 5.309 24 N -0.089 5.089 25 N -0.049 5.049 26 N -0.342 5.342 27 C 0.261 3.739 28 C -0.111 4.111 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.175 0.825 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -8.151 7.691 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.289 5.289 4 C 0.099 3.901 5 C -0.564 4.564 6 H 0.083 0.917 7 C -0.173 4.173 8 N -0.573 5.573 9 Si 0.745 3.255 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.161 1.161 13 C 0.360 3.640 14 O -0.441 6.441 15 C -0.072 4.072 16 C -0.027 4.027 17 C -0.100 4.100 18 C -0.100 4.100 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.118 4.118 23 N -0.099 5.099 24 N -0.074 5.074 25 N -0.043 5.043 26 N -0.194 5.194 27 C -0.014 4.014 28 C -0.170 4.170 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.192 0.808 38 H 0.180 0.820 39 H 0.174 0.826 40 H 0.147 0.853 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.682 -8.011 8.826 13.205 hybrid contribution 0.499 1.297 -1.588 2.110 sum -5.183 -6.714 7.238 11.150 Atomic orbital electron populations 1.22234 0.93984 1.03905 1.02159 1.21832 0.95578 0.81424 1.04090 1.47887 1.60336 1.14946 1.05692 1.19586 0.96895 0.92731 0.80932 1.21604 0.98409 1.30418 1.05987 0.91705 1.25494 0.96422 0.97259 0.98135 1.70007 1.20563 1.45853 1.20922 0.86135 0.81670 0.79742 0.77939 1.20804 1.21402 1.16062 1.17374 0.77546 0.86026 0.83100 1.90812 1.49765 1.16718 1.86767 1.19722 0.90510 1.05096 0.91837 1.22405 0.89164 0.93027 0.98143 1.18703 0.95930 0.94549 1.00827 1.21543 0.94432 0.96785 0.97247 1.21377 0.96818 0.98514 0.97408 1.21517 0.99948 0.92690 0.97795 1.20966 0.96204 0.98753 0.97364 1.21683 0.96064 0.98140 0.95904 1.48672 1.15125 1.32804 1.13326 1.82550 1.15333 1.19026 0.90504 1.77950 1.00050 1.05861 1.20457 1.74459 1.26569 1.18104 1.00291 1.26233 0.83113 0.93469 0.98586 1.21265 1.05890 0.99585 0.90226 0.93517 0.91362 0.89028 0.89434 0.90121 0.92766 0.95282 0.92906 0.80753 0.81967 0.82580 0.85336 0.88157 0.87108 0.86129 0.85408 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.22 71.98 0.74 -2.65 16 2 C 0.09 2.45 6.09 86.38 0.53 2.98 16 3 N -0.56 -19.01 2.46 -830.58 -2.04 -21.05 16 4 C 0.22 8.97 4.30 85.63 0.37 9.34 16 5 C -0.53 -26.15 9.94 25.60 0.25 -25.90 16 6 H 0.06 3.51 6.44 -2.91 -0.02 3.49 16 7 C 0.03 1.35 5.47 84.65 0.46 1.81 16 8 N -0.93 -52.99 13.96 21.45 0.30 -52.69 16 9 Si 0.92 40.11 27.47 68.60 1.88 41.99 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 13 C 0.57 20.18 1.97 86.52 0.17 20.35 16 14 O -0.56 -23.69 13.10 -4.23 -0.06 -23.75 16 15 C 0.02 0.74 4.98 39.41 0.20 0.93 16 16 C 0.00 -0.13 8.45 23.92 0.20 0.07 16 17 C -0.10 -2.92 5.44 -20.16 -0.11 -3.03 16 18 C -0.08 -1.96 9.80 22.58 0.22 -1.74 16 19 C -0.12 -3.11 10.03 22.23 0.22 -2.88 16 20 C -0.10 -3.22 10.04 22.35 0.22 -2.99 16 21 C -0.11 -4.34 9.06 22.22 0.20 -4.14 16 22 C -0.10 -3.69 7.75 22.58 0.18 -3.51 16 23 N -0.31 -9.27 3.85 -175.15 -0.67 -9.95 16 24 N -0.09 -2.72 13.30 37.02 0.49 -2.23 16 25 N -0.05 -1.57 13.39 37.02 0.50 -1.07 16 26 N -0.34 -10.60 12.16 -50.29 -0.61 -11.21 16 27 C 0.26 7.57 7.81 138.04 1.08 8.64 16 28 C -0.11 -2.70 9.33 71.23 0.66 -2.03 16 29 H 0.05 0.97 5.75 -2.39 -0.01 0.96 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.09 2.40 8.11 -2.38 -0.02 2.39 16 33 H 0.08 1.94 5.83 -2.38 -0.01 1.93 16 34 H 0.05 2.04 7.13 -2.38 -0.02 2.03 16 35 H 0.03 1.28 6.78 -2.38 -0.02 1.26 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.18 3.66 7.74 -2.91 -0.02 3.64 16 38 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 41 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.11 4.68 5.13 -2.91 -0.01 4.66 16 43 H 0.12 2.44 6.37 -2.39 -0.02 2.43 16 44 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.09 2.84 4.19 -2.39 -0.01 2.83 16 Total: -1.00 -65.81 369.54 6.37 -59.45 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.98 Total: 25.25 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.59 Total: -4.75 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -2.04 Total: -98.20 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.06 Total: -23.75 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.88 Total: 41.99 kcal Total: -65.81 6.37 -59.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764869600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.711 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds