Wall clock time and date at job start Wed Apr 1 2020 01:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47040 * 2 1 4 4 C 1.34237 * 116.99482 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99973 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99503 * 180.02562 * 4 3 2 7 7 C 1.50701 * 112.84567 * 309.66057 * 6 4 3 8 8 O 1.20823 * 119.99997 * 228.80358 * 7 6 4 9 9 O 1.34233 * 120.00001 * 48.81336 * 7 6 4 10 10 C 1.45203 * 116.99819 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47055 * 29.99842 * 10 9 7 12 12 C 1.53001 * 109.46976 * 269.99990 * 10 9 7 13 13 C 1.50696 * 109.47108 * 149.99577 * 10 9 7 14 14 O 1.21280 * 120.00095 * 5.00216 * 13 10 9 15 15 N 1.34771 * 119.99966 * 184.99766 * 13 10 9 16 16 C 1.46496 * 120.00157 * 359.97438 * 15 13 10 17 17 C 1.46506 * 120.00084 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.46928 * 270.00021 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46922 * 90.00621 * 22 20 18 24 24 H 1.48500 * 109.47411 * 210.00442 * 22 20 18 25 25 H 1.48494 * 109.47378 * 330.00637 * 22 20 18 26 26 C 1.53776 * 113.69458 * 80.93638 * 6 4 3 27 27 C 1.53773 * 87.08109 * 89.12419 * 26 6 4 28 28 C 1.53770 * 87.08356 * 25.43397 * 27 26 6 29 29 H 1.08996 * 109.47445 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47213 * 300.00051 * 1 2 3 31 31 H 1.08999 * 109.47258 * 59.99720 * 1 2 3 32 32 H 1.08996 * 109.47107 * 240.00060 * 2 1 3 33 33 H 1.09000 * 109.46962 * 119.99821 * 2 1 3 34 34 H 1.09007 * 109.46783 * 300.00143 * 12 10 9 35 35 H 1.08992 * 109.47330 * 59.99976 * 12 10 9 36 36 H 1.08997 * 109.46986 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.47445 * 269.99904 * 16 15 13 38 38 H 1.09001 * 109.47057 * 30.00532 * 16 15 13 39 39 H 1.08999 * 109.47333 * 150.00092 * 16 15 13 40 40 H 1.09004 * 109.47073 * 29.99849 * 17 15 13 41 41 H 1.09000 * 109.47212 * 149.99932 * 17 15 13 42 42 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 43 43 H 1.09005 * 113.61019 * 203.67649 * 26 6 4 44 44 H 1.09004 * 113.61061 * 334.56858 * 26 6 4 45 45 H 1.09002 * 113.61257 * 270.88046 * 27 26 6 46 46 H 1.09007 * 113.68956 * 139.99668 * 27 26 6 47 47 H 1.09000 * 113.61439 * 220.01801 * 28 27 26 48 48 H 1.08999 * 113.69440 * 89.13039 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.3248 3.8174 -1.0683 8 8 4.0464 4.4604 -1.7934 9 8 1.9923 3.8872 -1.2142 10 6 1.4886 4.7555 -2.2634 11 1 2.2127 4.8002 -3.0769 12 6 1.2673 6.1607 -1.7000 13 6 0.1829 4.2110 -2.7825 14 8 -0.3235 3.2437 -2.2545 15 7 -0.4222 4.7989 -3.8335 16 6 0.1891 5.9677 -4.4709 17 6 -1.6919 4.2698 -4.3378 18 6 -1.4188 3.2332 -5.3970 19 1 -0.4012 2.9922 -5.6671 20 6 -2.4679 2.5916 -6.0204 21 7 -3.7070 2.8846 -5.6912 22 14 -2.1294 1.3072 -7.3338 23 1 -2.0136 -0.0306 -6.6996 24 1 -3.2450 1.2954 -8.3139 25 1 -0.8606 1.6355 -8.0320 26 6 3.9526 3.5923 1.3909 27 6 5.3428 2.9600 1.5703 28 6 5.4578 2.9681 0.0369 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5432 6.1160 -0.8864 35 1 2.2117 6.5546 -1.3245 36 1 0.8888 6.8124 -2.4874 37 1 -0.1723 6.8755 -3.9881 38 1 1.2731 5.9102 -4.3718 39 1 -0.0785 5.9869 -5.5274 40 1 -2.2469 3.8140 -3.5179 41 1 -2.2790 5.0818 -4.7669 42 1 -4.4450 2.4336 -6.1300 43 1 3.9691 4.6818 1.3602 44 1 3.2020 3.1986 2.0762 45 1 5.3149 1.9590 2.0008 46 1 6.0608 3.6138 2.0656 47 1 5.9225 2.0704 -0.3709 48 1 5.8860 3.8863 -0.3653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768575516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:15 Heat of formation + Delta-G solvation = -174.742778 kcal Electronic energy + Delta-G solvation = -31785.009605 eV Core-core repulsion = 27420.918175 eV Total energy + Delta-G solvation = -4364.091431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71245 -40.32424 -39.12886 -38.21061 -36.49084 -36.25572 -34.90968 -32.91474 -31.77645 -31.48970 -28.43339 -27.68606 -26.22230 -26.13554 -24.55941 -23.75351 -22.82605 -22.02929 -21.39231 -19.53176 -18.91796 -18.59660 -17.36815 -16.94263 -16.60926 -16.54599 -16.35536 -15.84059 -15.82946 -15.38011 -14.88486 -14.60557 -14.27617 -13.98410 -13.65078 -13.56678 -13.17775 -12.98596 -12.96610 -12.66609 -12.42679 -12.40994 -12.21396 -12.09866 -11.84788 -11.82680 -11.69341 -11.48340 -11.43285 -11.35224 -11.22302 -10.92773 -10.92670 -10.73379 -10.65937 -10.60300 -10.45595 -10.35764 -10.18899 -9.67057 -8.89373 -8.46884 -7.73362 -6.08060 -4.12967 1.64644 2.02957 2.46057 2.54069 3.26322 3.29270 3.35436 3.38967 3.74080 3.84497 3.96347 4.28885 4.39675 4.42390 4.57636 4.81509 4.92281 4.99594 5.02560 5.06715 5.07503 5.24415 5.26608 5.29646 5.33687 5.44915 5.49199 5.52196 5.62298 5.62905 5.64761 5.77752 5.83495 5.91346 5.96813 5.97909 6.19991 6.21928 6.32625 6.51878 6.96644 7.36998 7.44450 7.53796 7.63045 7.88122 8.18213 8.28247 8.83590 8.98703 9.52274 10.99965 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.003587 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.343775 B = 7803.931590 C = 9028.055781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.324 6.324 4 C 0.490 3.510 5 O -0.498 6.498 6 C -0.085 4.085 7 C 0.480 3.520 8 O -0.497 6.497 9 O -0.305 6.305 10 C 0.066 3.934 11 H 0.104 0.896 12 C -0.169 4.169 13 C 0.508 3.492 14 O -0.512 6.512 15 N -0.597 5.597 16 C 0.076 3.924 17 C 0.248 3.752 18 C -0.529 4.529 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.106 4.106 27 C -0.140 4.140 28 C -0.101 4.101 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.849 4.231 14.451 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.007 4.007 3 O -0.239 6.239 4 C 0.332 3.668 5 O -0.386 6.386 6 C -0.088 4.088 7 C 0.322 3.678 8 O -0.385 6.385 9 O -0.219 6.219 10 C 0.008 3.992 11 H 0.122 0.878 12 C -0.226 4.226 13 C 0.292 3.708 14 O -0.387 6.387 15 N -0.331 5.331 16 C -0.068 4.068 17 C 0.129 3.871 18 C -0.567 4.567 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.143 4.143 27 C -0.178 4.178 28 C -0.138 4.138 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.112 0.888 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 14.700 3.548 14.438 20.908 hybrid contribution 0.108 -0.756 -1.124 1.359 sum 14.807 2.793 13.314 20.108 Atomic orbital electron populations 1.21814 0.91740 1.02702 1.04910 1.23123 0.96263 0.79234 1.02033 1.86685 1.22118 1.32816 1.82309 1.22175 0.81809 0.89965 0.72893 1.90658 1.60860 1.41787 1.45303 1.21787 0.98939 0.90555 0.97506 1.22767 0.81689 0.80382 0.83009 1.90652 1.61635 1.43111 1.43133 1.86720 1.22080 1.61484 1.51614 1.22716 0.96422 0.89928 0.90180 0.87824 1.22275 1.03295 0.93823 1.03254 1.19704 0.85306 0.84422 0.81333 1.90704 1.64720 1.25554 1.57731 1.48066 1.25332 1.29705 1.29962 1.21836 0.97204 0.88056 0.99668 1.19333 0.78495 0.94270 0.94956 1.21427 0.93062 1.21871 1.20384 0.92478 1.24915 0.94885 0.96926 0.97224 1.69924 0.98231 1.42549 1.42569 0.86510 0.77816 0.81962 0.81223 1.20520 1.21080 1.19918 1.22941 0.99173 1.01461 0.90771 1.22929 0.96518 1.02153 0.96173 1.22972 0.88337 1.05432 0.97068 0.90490 0.91614 0.89764 0.91234 0.91519 0.90837 0.91375 0.89250 0.93138 0.92430 0.90323 0.93633 0.94662 0.92662 0.87694 0.89106 0.89117 0.89588 0.88781 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.29 37.16 0.38 -1.68 16 2 C 0.07 0.91 6.19 37.16 0.23 1.14 16 3 O -0.32 -5.12 9.30 -43.98 -0.41 -5.53 16 4 C 0.49 7.19 6.73 36.01 0.24 7.44 16 5 O -0.50 -7.79 15.58 -18.75 -0.29 -8.08 16 6 C -0.09 -1.07 1.27 -156.00 -0.20 -1.26 16 7 C 0.48 7.22 6.99 36.01 0.25 7.47 16 8 O -0.50 -7.86 15.12 -18.75 -0.28 -8.14 16 9 O -0.30 -5.21 8.49 -48.10 -0.41 -5.61 16 10 C 0.07 1.10 2.16 -27.88 -0.06 1.04 16 11 H 0.10 1.67 6.15 -51.93 -0.32 1.36 16 12 C -0.17 -2.14 9.27 37.16 0.34 -1.79 16 13 C 0.51 10.75 7.10 -10.99 -0.08 10.67 16 14 O -0.51 -12.91 16.09 -14.05 -0.23 -13.14 16 15 N -0.60 -12.48 2.86 -182.96 -0.52 -13.00 16 16 C 0.08 1.17 8.92 59.84 0.53 1.71 16 17 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 18 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 19 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 22 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.11 -0.93 7.21 -25.93 -0.19 -1.12 16 27 C -0.14 -1.08 7.75 -25.93 -0.20 -1.28 16 28 C -0.10 -1.01 6.78 -25.92 -0.18 -1.19 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.00 5.12 -51.93 -0.27 0.73 16 37 H 0.05 0.64 7.02 -51.93 -0.36 0.27 16 38 H 0.06 0.76 6.07 -51.93 -0.32 0.44 16 39 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 41 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 44 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 48 H 0.11 1.04 7.43 -51.93 -0.39 0.66 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -34.82 400.60 -7.20 -42.02 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.45 Total: 0.18 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 0.64 Total: 13.96 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.21 Total: -38.46 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.62 Total: -40.51 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.82 -7.20 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768575516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.723 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds