Wall clock time and date at job start Wed Apr 1 2020 01:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47040 * 2 1 4 4 C 1.34237 * 116.99482 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99973 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99503 * 180.02562 * 4 3 2 7 7 C 1.50701 * 112.84567 * 309.66057 * 6 4 3 8 8 O 1.20823 * 119.99997 * 228.80358 * 7 6 4 9 9 O 1.34233 * 120.00001 * 48.81336 * 7 6 4 10 10 C 1.45203 * 116.99819 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47055 * 29.99842 * 10 9 7 12 12 C 1.53001 * 109.46976 * 269.99990 * 10 9 7 13 13 C 1.50696 * 109.47108 * 149.99577 * 10 9 7 14 14 O 1.21280 * 120.00095 * 5.00216 * 13 10 9 15 15 N 1.34771 * 119.99966 * 184.99766 * 13 10 9 16 16 C 1.46496 * 120.00157 * 359.97438 * 15 13 10 17 17 C 1.46506 * 120.00084 * 180.02562 * 15 13 10 18 18 C 1.50699 * 109.46928 * 270.00021 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46922 * 90.00621 * 22 20 18 24 24 H 1.48500 * 109.47411 * 210.00442 * 22 20 18 25 25 H 1.48494 * 109.47378 * 330.00637 * 22 20 18 26 26 C 1.53776 * 113.69458 * 80.93638 * 6 4 3 27 27 C 1.53773 * 87.08109 * 89.12419 * 26 6 4 28 28 C 1.53770 * 87.08356 * 25.43397 * 27 26 6 29 29 H 1.08996 * 109.47445 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47213 * 300.00051 * 1 2 3 31 31 H 1.08999 * 109.47258 * 59.99720 * 1 2 3 32 32 H 1.08996 * 109.47107 * 240.00060 * 2 1 3 33 33 H 1.09000 * 109.46962 * 119.99821 * 2 1 3 34 34 H 1.09007 * 109.46783 * 300.00143 * 12 10 9 35 35 H 1.08992 * 109.47330 * 59.99976 * 12 10 9 36 36 H 1.08997 * 109.46986 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.47445 * 269.99904 * 16 15 13 38 38 H 1.09001 * 109.47057 * 30.00532 * 16 15 13 39 39 H 1.08999 * 109.47333 * 150.00092 * 16 15 13 40 40 H 1.09004 * 109.47073 * 29.99849 * 17 15 13 41 41 H 1.09000 * 109.47212 * 149.99932 * 17 15 13 42 42 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 43 43 H 1.09005 * 113.61019 * 203.67649 * 26 6 4 44 44 H 1.09004 * 113.61061 * 334.56858 * 26 6 4 45 45 H 1.09002 * 113.61257 * 270.88046 * 27 26 6 46 46 H 1.09007 * 113.68956 * 139.99668 * 27 26 6 47 47 H 1.09000 * 113.61439 * 220.01801 * 28 27 26 48 48 H 1.08999 * 113.69440 * 89.13039 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.3248 3.8174 -1.0683 8 8 4.0464 4.4604 -1.7934 9 8 1.9923 3.8872 -1.2142 10 6 1.4886 4.7555 -2.2634 11 1 2.2127 4.8002 -3.0769 12 6 1.2673 6.1607 -1.7000 13 6 0.1829 4.2110 -2.7825 14 8 -0.3235 3.2437 -2.2545 15 7 -0.4222 4.7989 -3.8335 16 6 0.1891 5.9677 -4.4709 17 6 -1.6919 4.2698 -4.3378 18 6 -1.4188 3.2332 -5.3970 19 1 -0.4012 2.9922 -5.6671 20 6 -2.4679 2.5916 -6.0204 21 7 -3.7070 2.8846 -5.6912 22 14 -2.1294 1.3072 -7.3338 23 1 -2.0136 -0.0306 -6.6996 24 1 -3.2450 1.2954 -8.3139 25 1 -0.8606 1.6355 -8.0320 26 6 3.9526 3.5923 1.3909 27 6 5.3428 2.9600 1.5703 28 6 5.4578 2.9681 0.0369 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5432 6.1160 -0.8864 35 1 2.2117 6.5546 -1.3245 36 1 0.8888 6.8124 -2.4874 37 1 -0.1723 6.8755 -3.9881 38 1 1.2731 5.9102 -4.3718 39 1 -0.0785 5.9869 -5.5274 40 1 -2.2469 3.8140 -3.5179 41 1 -2.2790 5.0818 -4.7669 42 1 -4.4450 2.4336 -6.1300 43 1 3.9691 4.6818 1.3602 44 1 3.2020 3.1986 2.0762 45 1 5.3149 1.9590 2.0008 46 1 6.0608 3.6138 2.0656 47 1 5.9225 2.0704 -0.3709 48 1 5.8860 3.8863 -0.3653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768575516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:14 Heat of formation + Delta-G solvation = -194.877700 kcal Electronic energy + Delta-G solvation = -31785.882721 eV Core-core repulsion = 27420.918175 eV Total energy + Delta-G solvation = -4364.964546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.77698 -41.59035 -40.59070 -39.29608 -37.71761 -37.41117 -36.66899 -34.91384 -33.11805 -32.69583 -29.73143 -29.20927 -27.64184 -26.91770 -26.04597 -25.03617 -24.30310 -23.15073 -22.55547 -20.53345 -20.41557 -19.78536 -18.71768 -18.57503 -18.13930 -17.76479 -17.70200 -17.16163 -17.04411 -16.82197 -16.42104 -15.88836 -15.69456 -15.13137 -14.96234 -14.81404 -14.50517 -14.24773 -14.14600 -13.83362 -13.69275 -13.52807 -13.50318 -13.35639 -13.31228 -13.04458 -12.98929 -12.82556 -12.78901 -12.62703 -12.56646 -12.53277 -12.22386 -12.16621 -11.96634 -11.72314 -11.68517 -11.62915 -11.53300 -11.45369 -10.66886 -10.57939 -9.50226 -8.25192 -6.39489 0.52056 0.89983 1.25791 1.34410 1.36841 1.46476 1.48503 1.64995 2.28082 2.40944 2.87586 3.04676 3.16542 3.37016 3.41964 3.48772 3.64411 3.73791 3.84098 3.93350 3.96485 4.21776 4.25846 4.32694 4.51959 4.58777 4.60925 4.62775 4.67919 4.71364 4.79759 4.85392 4.85811 4.86968 4.95119 4.99693 5.07120 5.09556 5.15060 5.21710 5.26673 5.37558 5.50785 5.77829 6.02748 6.34356 6.47315 6.61735 6.69446 7.21508 7.36293 8.81885 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.003587 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.343775 B = 7803.931590 C = 9028.055781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.344 6.344 4 C 0.487 3.513 5 O -0.513 6.513 6 C -0.099 4.099 7 C 0.480 3.520 8 O -0.506 6.506 9 O -0.325 6.325 10 C 0.074 3.926 11 H 0.111 0.889 12 C -0.160 4.160 13 C 0.498 3.502 14 O -0.567 6.567 15 N -0.601 5.601 16 C 0.069 3.931 17 C 0.263 3.737 18 C -0.546 4.546 19 H 0.049 0.951 20 C 0.013 3.987 21 N -0.924 5.924 22 Si 0.962 3.038 23 H -0.281 1.281 24 H -0.271 1.271 25 H -0.265 1.265 26 C -0.099 4.099 27 C -0.125 4.125 28 C -0.099 4.099 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.002 0.998 41 H 0.033 0.967 42 H 0.268 0.732 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.117 0.883 47 H 0.082 0.918 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.988 5.417 15.025 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 O -0.260 6.260 4 C 0.329 3.671 5 O -0.402 6.402 6 C -0.102 4.102 7 C 0.322 3.678 8 O -0.394 6.394 9 O -0.239 6.239 10 C 0.016 3.984 11 H 0.129 0.871 12 C -0.217 4.217 13 C 0.284 3.716 14 O -0.446 6.446 15 N -0.334 5.334 16 C -0.073 4.073 17 C 0.142 3.858 18 C -0.585 4.585 19 H 0.067 0.933 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.787 3.213 23 H -0.207 1.207 24 H -0.196 1.196 25 H -0.189 1.189 26 C -0.136 4.136 27 C -0.162 4.162 28 C -0.136 4.136 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.021 0.979 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.143 0.857 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.135 0.865 47 H 0.101 0.899 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.868 4.784 14.999 23.074 hybrid contribution -0.572 -1.133 -1.300 1.817 sum 16.296 3.651 13.699 21.600 Atomic orbital electron populations 1.21771 0.91791 1.03871 1.02970 1.23262 0.96228 0.78835 1.02810 1.86692 1.23049 1.33835 1.82423 1.22633 0.81295 0.90903 0.72224 1.90637 1.60946 1.42525 1.46105 1.22181 1.00046 0.89002 0.98931 1.23246 0.80790 0.80461 0.83293 1.90633 1.61491 1.43784 1.43536 1.86732 1.23521 1.62042 1.51638 1.22645 0.93468 0.91418 0.90894 0.87116 1.22288 1.04621 0.91190 1.03619 1.20589 0.86617 0.83640 0.80725 1.90676 1.66529 1.27972 1.59393 1.48042 1.24110 1.31057 1.30168 1.22176 0.98704 0.87061 0.99348 1.18810 0.80534 0.93621 0.92837 1.21681 0.92785 1.22881 1.21154 0.93291 1.25767 0.94653 0.98862 0.99374 1.70025 0.99069 1.43598 1.43645 0.85501 0.78370 0.78822 0.78649 1.20721 1.19629 1.18937 1.23098 0.99977 1.02492 0.88014 1.22886 0.96398 1.02517 0.94378 1.23077 0.86124 1.05368 0.99062 0.87807 0.90879 0.94172 0.92145 0.88942 0.91163 0.88976 0.87432 0.89610 0.89650 0.90828 0.97950 0.94941 0.92279 0.85689 0.88694 0.89609 0.86477 0.89910 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 10.29 71.98 0.74 -3.36 16 2 C 0.06 1.73 6.19 71.98 0.45 2.17 16 3 O -0.34 -11.17 9.30 -46.98 -0.44 -11.61 16 4 C 0.49 14.29 6.73 71.24 0.48 14.77 16 5 O -0.51 -16.02 15.58 21.98 0.34 -15.68 16 6 C -0.10 -2.36 1.27 -53.15 -0.07 -2.43 16 7 C 0.48 13.94 6.99 71.24 0.50 14.44 16 8 O -0.51 -15.12 15.12 21.97 0.33 -14.78 16 9 O -0.32 -11.04 8.49 -42.99 -0.36 -11.40 16 10 C 0.07 2.39 2.16 29.85 0.06 2.46 16 11 H 0.11 3.41 6.15 -2.39 -0.01 3.39 16 12 C -0.16 -3.65 9.27 71.98 0.67 -2.98 16 13 C 0.50 21.56 7.10 87.66 0.62 22.18 16 14 O -0.57 -30.28 16.09 15.72 0.25 -30.03 16 15 N -0.60 -25.46 2.86 -851.14 -2.43 -27.90 16 16 C 0.07 2.00 8.92 127.77 1.14 3.14 16 17 C 0.26 14.04 5.16 85.63 0.44 14.48 16 18 C -0.55 -31.62 9.39 25.60 0.24 -31.38 16 19 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.01 0.75 5.46 84.65 0.46 1.21 16 21 N -0.92 -55.36 13.29 21.45 0.28 -55.07 16 22 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C -0.10 -1.49 7.21 31.12 0.22 -1.26 16 27 C -0.12 -1.56 7.75 31.11 0.24 -1.32 16 28 C -0.10 -1.80 6.78 31.12 0.21 -1.59 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.09 2.08 8.13 -2.39 -0.02 2.06 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 2.03 5.12 -2.39 -0.01 2.02 16 37 H 0.09 1.91 7.02 -2.39 -0.02 1.90 16 38 H 0.08 2.01 6.07 -2.39 -0.01 2.00 16 39 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 40 H 0.00 0.15 7.42 -2.38 -0.02 0.13 16 41 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 42 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.12 1.41 8.09 -2.38 -0.02 1.39 16 44 H 0.09 1.37 8.10 -2.38 -0.02 1.35 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 47 H 0.08 1.69 7.42 -2.39 -0.02 1.68 16 48 H 0.12 1.96 7.43 -2.39 -0.02 1.95 16 Total: -1.00 -79.85 400.60 7.38 -72.47 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.96 Total: 16.32 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 6.41 Total: 30.52 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.15 Total: -82.97 kcal Atomic # 8 Polarization: -83.63 SS G_CDS: 0.13 Total: -83.50 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -79.85 7.38 -72.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768575516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.409 kcal (2) G-P(sol) polarization free energy of solvation -79.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds