Wall clock time and date at job start Wed Apr 1 2020 01:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47431 * 2 1 4 4 C 1.34225 * 117.00367 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00088 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.50699 * 112.84702 * 309.66614 * 6 4 3 8 8 O 1.20826 * 119.99870 * 228.80024 * 7 6 4 9 9 O 1.34218 * 120.00192 * 48.80678 * 7 6 4 10 10 C 1.45202 * 117.00377 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46505 * 329.99873 * 10 9 7 12 12 C 1.53006 * 109.47243 * 89.99417 * 10 9 7 13 13 C 1.50698 * 109.47680 * 209.99909 * 10 9 7 14 14 O 1.21281 * 119.99422 * 354.99439 * 13 10 9 15 15 N 1.34769 * 120.00321 * 175.00270 * 13 10 9 16 16 C 1.46502 * 120.00154 * 359.97438 * 15 13 10 17 17 C 1.46499 * 119.99994 * 180.02562 * 15 13 10 18 18 C 1.50703 * 109.47449 * 89.99815 * 17 15 13 19 19 H 1.07995 * 119.99737 * 359.97438 * 18 17 15 20 20 C 1.37871 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31508 * 120.00278 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99701 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47289 * 90.00146 * 22 20 18 24 24 H 1.48498 * 109.47104 * 209.99801 * 22 20 18 25 25 H 1.48499 * 109.47137 * 329.99741 * 22 20 18 26 26 C 1.53788 * 113.68825 * 80.93385 * 6 4 3 27 27 C 1.53780 * 87.07942 * 89.12798 * 26 6 4 28 28 C 1.53782 * 87.08423 * 25.43183 * 27 26 6 29 29 H 1.09000 * 109.46670 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47073 * 299.99620 * 1 2 3 31 31 H 1.09004 * 109.46945 * 60.00152 * 1 2 3 32 32 H 1.09004 * 109.47220 * 240.00004 * 2 1 3 33 33 H 1.09007 * 109.47265 * 120.00543 * 2 1 3 34 34 H 1.09001 * 109.47002 * 60.00200 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00466 * 12 10 9 37 37 H 1.08990 * 109.47314 * 89.99806 * 16 15 13 38 38 H 1.08998 * 109.47376 * 210.01109 * 16 15 13 39 39 H 1.09005 * 109.46677 * 330.00437 * 16 15 13 40 40 H 1.09007 * 109.46830 * 209.99384 * 17 15 13 41 41 H 1.08993 * 109.47505 * 329.99405 * 17 15 13 42 42 H 0.97003 * 120.00108 * 180.02562 * 21 20 18 43 43 H 1.08994 * 113.60834 * 203.67517 * 26 6 4 44 44 H 1.08999 * 113.61673 * 334.57857 * 26 6 4 45 45 H 1.09003 * 113.61655 * 270.87791 * 27 26 6 46 46 H 1.09001 * 113.69078 * 139.99159 * 27 26 6 47 47 H 1.09002 * 113.61126 * 220.02106 * 28 27 26 48 48 H 1.08996 * 113.69116 * 89.12251 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.3248 3.8175 -1.0682 8 8 4.0464 4.4605 -1.7933 9 8 1.9924 3.8873 -1.2141 10 6 1.4886 4.7557 -2.2631 11 1 2.1810 5.5841 -2.4126 12 6 1.3562 3.9606 -3.5637 13 6 0.1390 5.2947 -1.8643 14 8 -0.3908 4.9083 -0.8441 15 7 -0.4792 6.2059 -2.6414 16 6 0.1610 6.6729 -3.8736 17 6 -1.7909 6.7303 -2.2533 18 6 -1.6084 7.9564 -1.3964 19 1 -0.6146 8.3095 -1.1637 20 6 -2.7100 8.6268 -0.9085 21 7 -3.9200 8.1965 -1.1914 22 14 -2.4836 10.1462 0.1542 23 1 -2.4417 11.3531 -0.7100 24 1 -3.6180 10.2581 1.1059 25 1 -1.2111 10.0353 0.9117 26 6 3.9526 3.5923 1.3911 27 6 5.3428 2.9599 1.5704 28 6 5.4579 2.9682 0.0370 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.6639 3.1321 -3.4142 35 1 0.9785 4.6126 -4.3512 36 1 2.3324 3.5708 -3.8522 37 1 -0.1369 6.0319 -4.7032 38 1 -0.1477 7.6982 -4.0774 39 1 1.2441 6.6360 -3.7567 40 1 -2.3563 6.9929 -3.1475 41 1 -2.3337 5.9711 -1.6903 42 1 -4.6951 8.6684 -0.8485 43 1 3.9691 4.6817 1.3604 44 1 3.2020 3.1985 2.0764 45 1 5.3149 1.9589 2.0009 46 1 6.0607 3.6137 2.0657 47 1 5.9225 2.0704 -0.3708 48 1 5.8859 3.8864 -0.3652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768575517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:16 Heat of formation + Delta-G solvation = -194.749025 kcal Electronic energy + Delta-G solvation = -31553.296118 eV Core-core repulsion = 27188.337152 eV Total energy + Delta-G solvation = -4364.958967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78820 -41.60187 -40.60554 -39.31946 -37.71902 -37.41271 -36.68787 -34.90515 -33.13644 -32.68221 -29.72747 -29.24491 -27.65042 -26.94440 -26.05374 -25.02050 -24.33236 -23.15959 -22.53240 -20.55902 -20.43931 -19.78995 -18.70583 -18.58175 -18.11399 -17.87123 -17.65186 -17.30938 -16.91948 -16.75352 -16.41600 -15.92636 -15.70126 -15.14449 -14.98356 -14.85340 -14.53118 -14.25786 -14.06042 -13.85062 -13.72108 -13.55909 -13.52988 -13.38771 -13.31380 -13.04822 -12.98595 -12.83286 -12.79499 -12.63194 -12.54910 -12.52327 -12.21937 -12.18708 -11.97505 -11.72038 -11.69720 -11.63598 -11.54266 -11.46552 -10.64299 -10.61097 -9.51235 -8.23411 -6.37946 0.55933 0.82010 1.25685 1.37034 1.39799 1.48614 1.49889 1.62972 2.27915 2.42006 2.86798 3.06759 3.14544 3.36606 3.40680 3.46517 3.61317 3.71810 3.80614 3.96315 3.99747 4.18791 4.28612 4.32552 4.48525 4.54792 4.55688 4.58242 4.66810 4.71657 4.78143 4.83143 4.85188 4.86790 4.94733 4.96505 5.05628 5.06084 5.13579 5.21849 5.23776 5.35692 5.51470 5.78218 6.03810 6.33470 6.47877 6.60900 6.70776 7.21222 7.36533 8.83874 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012592 B = 0.003138 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.179663 B = 8920.245451 C = 9211.567568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.349 6.349 4 C 0.495 3.505 5 O -0.506 6.506 6 C -0.098 4.098 7 C 0.479 3.521 8 O -0.506 6.506 9 O -0.325 6.325 10 C 0.075 3.925 11 H 0.118 0.882 12 C -0.162 4.162 13 C 0.501 3.499 14 O -0.572 6.572 15 N -0.599 5.599 16 C 0.068 3.932 17 C 0.261 3.739 18 C -0.547 4.547 19 H 0.052 0.948 20 C 0.011 3.989 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.274 1.274 26 C -0.110 4.110 27 C -0.124 4.124 28 C -0.094 4.094 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.001 0.999 42 H 0.268 0.732 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.792 -13.200 -0.918 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.265 6.265 4 C 0.337 3.663 5 O -0.395 6.395 6 C -0.100 4.100 7 C 0.322 3.678 8 O -0.394 6.394 9 O -0.240 6.240 10 C 0.017 3.983 11 H 0.135 0.865 12 C -0.219 4.219 13 C 0.288 3.712 14 O -0.451 6.451 15 N -0.332 5.332 16 C -0.074 4.074 17 C 0.141 3.859 18 C -0.585 4.585 19 H 0.070 0.930 20 C -0.188 4.188 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.187 1.187 24 H -0.206 1.206 25 H -0.199 1.199 26 C -0.148 4.148 27 C -0.161 4.161 28 C -0.131 4.131 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.050 0.950 41 H 0.020 0.980 42 H 0.077 0.923 43 H 0.128 0.872 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.112 0.888 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.661 -13.472 -0.629 22.222 hybrid contribution -0.674 0.738 0.363 1.063 sum 16.987 -12.734 -0.266 21.232 Atomic orbital electron populations 1.21822 0.91534 1.04222 1.03077 1.23366 0.96395 0.78574 1.03320 1.86697 1.22972 1.34241 1.82560 1.22335 0.81330 0.90328 0.72310 1.90643 1.60834 1.42142 1.45862 1.22152 1.00220 0.89589 0.98041 1.23243 0.80805 0.80700 0.83051 1.90633 1.61460 1.43423 1.43866 1.86732 1.23563 1.60848 1.52835 1.22627 0.93112 0.94732 0.87834 0.86475 1.22286 1.04367 1.01397 0.93849 1.20532 0.87121 0.79836 0.83733 1.90676 1.67424 1.60490 1.26543 1.48039 1.20858 1.40115 1.24171 1.22189 0.98384 1.01513 0.85275 1.18832 0.79372 0.92668 0.95070 1.21690 0.92858 1.11479 1.32489 0.92967 1.25809 0.94625 1.01014 0.97387 1.70036 0.98474 1.41622 1.46402 0.85440 0.77678 0.79247 0.78605 1.18740 1.20558 1.19925 1.23080 1.00480 1.02003 0.89189 1.22898 0.95682 1.02520 0.95011 1.23037 0.85988 1.05583 0.98496 0.87307 0.92148 0.92696 0.90518 0.89867 0.91537 0.87083 0.89722 0.89809 0.90602 0.89491 0.94950 0.98045 0.92317 0.87193 0.89177 0.89022 0.86940 0.88839 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 10.29 71.98 0.74 -2.21 16 2 C 0.06 1.20 6.19 71.98 0.45 1.64 16 3 O -0.35 -9.78 9.30 -46.87 -0.44 -10.22 16 4 C 0.49 13.00 6.73 71.24 0.48 13.48 16 5 O -0.51 -13.72 15.58 21.97 0.34 -13.38 16 6 C -0.10 -2.35 1.27 -53.14 -0.07 -2.42 16 7 C 0.48 14.10 6.99 71.24 0.50 14.59 16 8 O -0.51 -15.20 15.12 21.96 0.33 -14.86 16 9 O -0.33 -11.18 8.49 -42.85 -0.36 -11.55 16 10 C 0.08 2.45 2.16 29.85 0.06 2.51 16 11 H 0.12 3.52 6.14 -2.39 -0.01 3.50 16 12 C -0.16 -3.98 9.27 71.98 0.67 -3.31 16 13 C 0.50 21.66 7.10 87.66 0.62 22.28 16 14 O -0.57 -30.75 16.09 15.72 0.25 -30.50 16 15 N -0.60 -25.25 2.86 -851.15 -2.43 -27.68 16 16 C 0.07 1.96 8.92 127.77 1.14 3.10 16 17 C 0.26 13.92 5.16 85.63 0.44 14.36 16 18 C -0.55 -31.32 9.39 25.60 0.24 -31.08 16 19 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 20 C 0.01 0.63 5.46 84.65 0.46 1.09 16 21 N -0.93 -55.33 13.29 21.44 0.28 -55.05 16 22 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 C -0.11 -2.15 7.21 31.12 0.22 -1.92 16 27 C -0.12 -1.79 7.75 31.12 0.24 -1.55 16 28 C -0.09 -1.71 6.78 31.12 0.21 -1.49 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 2.21 5.12 -2.39 -0.01 2.20 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.88 7.02 -2.39 -0.02 1.86 16 38 H 0.08 2.26 8.07 -2.39 -0.02 2.24 16 39 H 0.09 2.01 6.08 -2.38 -0.01 1.99 16 40 H 0.03 1.72 8.07 -2.38 -0.02 1.70 16 41 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.11 2.07 8.09 -2.39 -0.02 2.05 16 44 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.09 1.71 7.42 -2.39 -0.02 1.69 16 48 H 0.12 2.01 7.43 -2.39 -0.02 1.99 16 Total: -1.00 -78.34 400.60 7.38 -70.96 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.96 Total: 16.62 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 6.41 Total: 29.07 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -2.15 Total: -82.73 kcal Atomic # 8 Polarization: -80.64 SS G_CDS: 0.13 Total: -80.51 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -78.34 7.38 -70.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768575517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.794 kcal (2) G-P(sol) polarization free energy of solvation -78.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds