Wall clock time and date at job start Wed Apr 1 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47070 * 2 1 4 4 C 1.34234 * 116.99938 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99712 * 359.72483 * 4 3 2 6 6 C 1.50700 * 120.00068 * 180.02562 * 4 3 2 7 7 C 1.50702 * 112.84709 * 50.33378 * 6 4 3 8 8 O 1.20819 * 119.99920 * 129.66812 * 7 6 4 9 9 O 1.34235 * 119.99930 * 309.66434 * 7 6 4 10 10 C 1.45195 * 116.99909 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47232 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00021 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00252 * 180.02562 * 11 10 9 14 14 C 1.46513 * 119.99760 * 359.97438 * 13 11 10 15 15 C 1.52997 * 109.46876 * 90.00406 * 14 13 11 16 16 C 1.46494 * 120.00234 * 180.02562 * 13 11 10 17 17 C 1.50699 * 109.47560 * 89.99527 * 16 13 11 18 18 H 1.08001 * 119.99749 * 359.97438 * 17 16 13 19 19 C 1.37869 * 120.00389 * 180.02562 * 17 16 13 20 20 N 1.31515 * 119.99931 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00353 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46944 * 59.99807 * 21 19 17 23 23 H 1.48501 * 109.47344 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46740 * 300.00136 * 21 19 17 25 25 C 1.53782 * 113.61409 * 279.13799 * 6 4 3 26 26 C 1.53952 * 87.01655 * 220.04854 * 25 6 4 27 27 C 1.53776 * 87.11464 * 25.36023 * 26 25 6 28 28 H 1.08998 * 109.47592 * 59.99703 * 1 2 3 29 29 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47084 * 299.99805 * 1 2 3 31 31 H 1.09012 * 109.46921 * 239.99989 * 2 1 3 32 32 H 1.08996 * 109.47090 * 120.00368 * 2 1 3 33 33 H 1.08998 * 109.47308 * 300.00689 * 10 9 7 34 34 H 1.09005 * 109.47342 * 59.99775 * 10 9 7 35 35 H 1.08998 * 109.46787 * 210.00278 * 14 13 11 36 36 H 1.08997 * 109.47126 * 330.00411 * 14 13 11 37 37 H 1.09001 * 109.47298 * 300.00322 * 15 14 13 38 38 H 1.09007 * 109.47098 * 59.99544 * 15 14 13 39 39 H 1.08998 * 109.47104 * 179.97438 * 15 14 13 40 40 H 1.09007 * 109.46784 * 209.99526 * 16 13 11 41 41 H 1.08997 * 109.46846 * 329.99268 * 16 13 11 42 42 H 0.97004 * 120.00028 * 180.02562 * 20 19 17 43 43 H 1.09000 * 113.61532 * 334.56760 * 25 6 4 44 44 H 1.08994 * 113.61350 * 105.46730 * 25 6 4 45 45 H 1.09000 * 113.53719 * 270.80928 * 26 25 6 46 46 H 1.09000 * 113.66639 * 139.93782 * 26 25 6 47 47 H 1.09004 * 113.61996 * 220.08755 * 27 26 25 48 48 H 1.09005 * 113.61510 * 89.18529 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9208 2.9374 0.0000 7 6 3.3258 3.8163 1.0699 8 8 4.0486 4.4369 1.8129 9 8 1.9927 3.9096 1.1972 10 6 1.4901 4.7752 2.2490 11 6 -0.0168 4.7535 2.2402 12 8 -0.6087 4.0758 1.4272 13 7 -0.7065 5.4882 3.1352 14 6 0.0086 6.3075 4.1170 15 6 0.2474 7.7037 3.5389 16 6 -2.1713 5.4667 3.1270 17 6 -2.6627 4.3653 4.0306 18 1 -1.9546 3.7432 4.5579 19 6 -4.0161 4.1511 4.1833 20 7 -4.8783 4.9076 3.5400 21 14 -4.6252 2.7863 5.3039 22 1 -4.1420 3.0288 6.6869 23 1 -6.1100 2.7637 5.2945 24 1 -4.1076 1.4810 4.8205 25 6 3.9488 3.5930 -1.3908 26 6 5.3313 4.1532 -1.0103 27 6 5.4577 2.9683 -0.0383 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.8526 4.4221 3.2144 34 1 1.8402 5.7936 2.0800 35 1 -0.5872 6.3876 5.0262 36 1 0.9663 5.8420 4.3500 37 1 0.8431 7.6236 2.6296 38 1 -0.7104 8.1692 3.3058 39 1 0.7790 8.3134 4.2695 40 1 -2.5507 6.4248 3.4825 41 1 -2.5263 5.2894 2.1118 42 1 -5.8305 4.7572 3.6477 43 1 3.9789 2.8758 -2.2110 44 1 3.1876 4.3612 -1.5267 45 1 5.2866 5.1224 -0.5136 46 1 6.0535 4.1276 -1.8263 47 1 5.9131 3.2329 0.9161 48 1 5.9012 2.0799 -0.4881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768576101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:55 Heat of formation + Delta-G solvation = -198.919509 kcal Electronic energy + Delta-G solvation = -31321.907234 eV Core-core repulsion = 26956.767421 eV Total energy + Delta-G solvation = -4365.139812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75458 -41.44045 -40.63876 -39.26452 -37.72139 -37.42034 -36.94891 -34.93409 -32.76650 -31.76033 -30.90153 -29.34388 -28.16401 -26.90073 -25.06910 -24.56581 -24.16435 -23.46280 -22.57399 -20.66754 -20.17692 -19.60954 -18.64637 -18.60680 -18.10728 -17.97710 -17.77714 -17.43491 -17.14571 -16.82149 -16.28425 -15.95438 -15.55834 -15.16806 -14.96998 -14.75812 -14.62814 -14.47213 -13.99800 -13.86973 -13.74595 -13.59149 -13.57020 -13.30752 -13.26447 -13.08604 -12.98736 -12.80470 -12.66371 -12.52690 -12.51879 -12.23974 -12.18876 -12.06528 -11.81791 -11.73526 -11.67319 -11.61716 -11.56624 -11.43275 -10.70429 -10.63930 -9.52658 -8.22732 -6.37077 0.53331 0.84290 1.20969 1.36886 1.40563 1.47825 1.55529 1.64185 2.27512 2.42105 2.88337 3.07311 3.16726 3.38042 3.43453 3.51741 3.65344 3.86683 3.93943 3.94248 3.97592 4.14362 4.23243 4.27385 4.38493 4.58487 4.59222 4.61012 4.72249 4.79272 4.84707 4.85382 4.88705 4.95416 4.99552 5.03384 5.05806 5.08892 5.21273 5.28654 5.36368 5.36898 5.54758 5.80442 6.05011 6.31950 6.49059 6.62910 6.72045 7.22853 7.37861 8.84377 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011862 B = 0.003458 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.006528 B = 8095.263357 C = 9806.305396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.350 6.350 4 C 0.480 3.520 5 O -0.514 6.514 6 C -0.098 4.098 7 C 0.491 3.509 8 O -0.499 6.499 9 O -0.329 6.329 10 C 0.058 3.942 11 C 0.499 3.501 12 O -0.568 6.568 13 N -0.595 5.595 14 C 0.093 3.907 15 C -0.163 4.163 16 C 0.265 3.735 17 C -0.545 4.545 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.926 5.926 21 Si 0.964 3.036 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.104 4.104 26 C -0.126 4.126 27 C -0.095 4.095 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.097 0.903 40 H 0.029 0.971 41 H 0.000 1.000 42 H 0.268 0.732 43 H 0.121 0.879 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.115 0.885 47 H 0.089 0.911 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.957 -0.983 -7.264 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.265 6.265 4 C 0.323 3.677 5 O -0.403 6.403 6 C -0.100 4.100 7 C 0.333 3.667 8 O -0.387 6.387 9 O -0.244 6.244 10 C -0.019 4.019 11 C 0.286 3.714 12 O -0.447 6.447 13 N -0.328 5.328 14 C -0.029 4.029 15 C -0.221 4.221 16 C 0.144 3.856 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.566 5.566 21 Si 0.788 3.212 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.142 4.142 26 C -0.163 4.163 27 C -0.132 4.132 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.139 0.861 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.133 0.867 47 H 0.107 0.893 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.793 -1.394 -7.447 22.130 hybrid contribution -1.177 -0.793 0.841 1.649 sum 19.617 -2.187 -6.606 20.814 Atomic orbital electron populations 1.21791 0.92002 1.03941 1.02854 1.23282 0.96004 0.78938 1.03132 1.86729 1.23445 1.33876 1.82493 1.23070 0.81135 0.91348 0.72129 1.90639 1.60902 1.42520 1.46239 1.22143 1.00195 0.88476 0.99236 1.22647 0.80513 0.80195 0.83367 1.90655 1.61476 1.43883 1.42725 1.86653 1.23457 1.62122 1.52172 1.22936 0.90968 0.96582 0.91372 1.20436 0.89293 0.80128 0.81519 1.90696 1.71676 1.42247 1.40124 1.48193 1.07872 1.44473 1.32276 1.21859 0.97432 0.91726 0.91838 1.22173 1.01945 0.95811 1.02137 1.18757 0.74746 0.96282 0.95770 1.21672 0.92204 1.17053 1.27472 0.92880 1.25800 0.96789 0.98758 0.97474 1.70035 1.02543 1.40651 1.43348 0.85523 0.77262 0.78972 0.79402 1.18555 1.20300 1.20364 1.23129 1.00248 1.00522 0.90275 1.22942 0.96129 0.97513 0.99711 1.23049 0.85983 1.01421 1.02788 0.91680 0.87540 0.93856 0.89328 0.91215 0.86767 0.85500 0.90116 0.88580 0.92272 0.93680 0.88436 0.95332 0.98153 0.92357 0.86081 0.89148 0.89322 0.86684 0.89258 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 10.29 71.98 0.74 -3.10 16 2 C 0.06 1.51 6.19 71.98 0.45 1.96 16 3 O -0.35 -10.72 9.34 -47.17 -0.44 -11.16 16 4 C 0.48 13.17 7.00 71.24 0.50 13.67 16 5 O -0.51 -14.87 15.66 21.96 0.34 -14.53 16 6 C -0.10 -2.24 1.27 -53.15 -0.07 -2.31 16 7 C 0.49 13.58 6.73 71.24 0.48 14.06 16 8 O -0.50 -14.01 15.58 21.98 0.34 -13.67 16 9 O -0.33 -10.91 8.87 -43.11 -0.38 -11.29 16 10 C 0.06 1.79 4.50 71.24 0.32 2.11 16 11 C 0.50 21.08 7.75 87.66 0.68 21.76 16 12 O -0.57 -29.97 16.08 15.78 0.25 -29.71 16 13 N -0.60 -24.82 2.46 -826.15 -2.03 -26.85 16 14 C 0.09 2.76 5.93 86.38 0.51 3.27 16 15 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 16 C 0.27 14.08 5.16 85.63 0.44 14.52 16 17 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 18 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 19 C 0.01 0.63 5.46 84.65 0.46 1.10 16 20 N -0.93 -55.44 13.29 21.44 0.28 -55.15 16 21 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 C -0.10 -1.67 7.22 31.18 0.23 -1.45 16 26 C -0.13 -1.57 7.76 31.18 0.24 -1.33 16 27 C -0.10 -1.62 6.77 31.12 0.21 -1.41 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 33 H 0.11 3.10 7.39 -2.39 -0.02 3.08 16 34 H 0.13 3.12 7.18 -2.38 -0.02 3.10 16 35 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 36 H 0.10 2.22 6.44 -2.39 -0.02 2.21 16 37 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 38 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 40 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 41 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 42 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.12 1.54 8.09 -2.39 -0.02 1.52 16 44 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.09 1.62 7.42 -2.38 -0.02 1.61 16 48 H 0.12 1.82 7.46 -2.38 -0.02 1.81 16 Total: -1.00 -78.10 406.03 7.52 -70.57 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.96 Total: 16.36 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 6.17 Total: 28.87 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -1.74 Total: -82.00 kcal Atomic # 8 Polarization: -80.47 SS G_CDS: 0.12 Total: -80.35 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -78.10 7.52 -70.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768576101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.345 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds