Wall clock time and date at job start Wed Apr 1 2020 00:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47300 * 2 1 4 4 N 1.46499 * 109.47243 * 239.99807 * 2 1 3 5 5 S 1.65597 * 120.00193 * 94.99772 * 4 2 1 6 6 O 1.42095 * 106.40367 * 178.53936 * 5 4 2 7 7 O 1.42099 * 106.40337 * 311.46205 * 5 4 2 8 8 N 1.65607 * 107.21650 * 65.00217 * 5 4 2 9 9 C 1.46499 * 119.99796 * 89.99623 * 8 5 4 10 10 C 1.46497 * 119.99948 * 270.00026 * 8 5 4 11 11 C 1.50703 * 109.47345 * 94.99798 * 10 8 5 12 12 H 1.08000 * 119.99764 * 359.97438 * 11 10 8 13 13 C 1.37873 * 120.00336 * 180.02562 * 11 10 8 14 14 N 1.31516 * 120.00245 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99878 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46616 * 90.00298 * 15 13 11 17 17 H 1.48500 * 109.47184 * 210.00167 * 15 13 11 18 18 H 1.48498 * 109.47140 * 330.00588 * 15 13 11 19 19 C 1.50701 * 109.46850 * 119.99680 * 2 1 3 20 20 C 1.38283 * 119.92453 * 259.99682 * 19 2 1 21 21 C 1.38105 * 120.07717 * 180.02562 * 20 19 2 22 22 C 1.38916 * 119.92118 * 0.02562 * 21 20 19 23 23 N 1.39671 * 120.07350 * 180.02562 * 22 21 20 24 24 C 1.46499 * 120.00098 * 359.97438 * 23 22 21 25 25 C 1.46502 * 119.99905 * 180.02562 * 23 22 21 26 26 C 1.38909 * 119.85330 * 359.97438 * 22 21 20 27 27 C 1.38107 * 119.92281 * 0.02562 * 26 22 21 28 28 H 1.08998 * 109.47351 * 60.00029 * 1 2 3 29 29 H 1.09002 * 109.47300 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47273 * 300.00219 * 1 2 3 31 31 H 0.97003 * 119.99620 * 274.99974 * 4 2 1 32 32 H 1.09003 * 109.46600 * 90.00580 * 9 8 5 33 33 H 1.09000 * 109.47035 * 209.99902 * 9 8 5 34 34 H 1.08998 * 109.47524 * 330.00436 * 9 8 5 35 35 H 1.08994 * 109.47202 * 215.00169 * 10 8 5 36 36 H 1.08996 * 109.47049 * 335.00259 * 10 8 5 37 37 H 0.97000 * 120.00018 * 180.02562 * 14 13 11 38 38 H 1.07995 * 119.96608 * 0.02907 * 20 19 2 39 39 H 1.07995 * 120.04503 * 179.73077 * 21 20 19 40 40 H 1.09002 * 109.46967 * 90.00470 * 24 23 22 41 41 H 1.09005 * 109.47301 * 210.00032 * 24 23 22 42 42 H 1.08996 * 109.47218 * 330.00405 * 24 23 22 43 43 H 1.09000 * 109.47520 * 59.99721 * 25 23 22 44 44 H 1.09003 * 109.47017 * 179.97438 * 25 23 22 45 45 H 1.09004 * 109.46872 * 299.99448 * 25 23 22 46 46 H 1.08001 * 120.04152 * 179.97438 * 26 22 21 47 47 H 1.08001 * 119.96109 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 16 2.4121 0.1770 -2.5505 6 8 2.8776 -0.7636 -3.5084 7 8 1.3246 1.0591 -2.7922 8 7 3.7097 1.1299 -2.1620 9 6 5.0719 0.6260 -2.3537 10 6 3.4954 2.4766 -1.6267 11 6 3.5356 2.4309 -0.1209 12 1 3.7035 1.4925 0.3866 13 6 3.3569 3.5869 0.6089 14 7 3.3924 3.5471 1.9230 15 14 3.0656 5.2100 -0.2687 16 1 1.6080 5.4081 -0.4719 17 1 3.6063 6.3216 0.5540 18 1 3.7508 5.1903 -1.5860 19 6 2.0322 -0.7104 1.2305 20 6 2.4584 0.0213 2.3238 21 6 2.9198 -0.6264 3.4529 22 6 2.9559 -2.0146 3.4893 23 7 3.4214 -2.6730 4.6298 24 6 3.8728 -1.8995 5.7891 25 6 3.4594 -4.1370 4.6662 26 6 2.5271 -2.7466 2.3893 27 6 2.0669 -2.0924 1.2634 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.1110 -1.6562 -1.1947 32 1 5.4161 0.8817 -3.3559 33 1 5.7340 1.0789 -1.6157 34 1 5.0792 -0.4571 -2.2323 35 1 4.2785 3.1413 -1.9911 36 1 2.5236 2.8469 -1.9531 37 1 3.2663 4.3603 2.4365 38 1 2.4304 1.1005 2.2947 39 1 3.2566 -0.0544 4.3048 40 1 3.0305 -1.7221 6.4579 41 1 4.6461 -2.4561 6.3186 42 1 4.2776 -0.9447 5.4536 43 1 4.1052 -4.5038 3.8684 44 1 3.8494 -4.4665 5.6293 45 1 2.4521 -4.5301 4.5280 46 1 2.5542 -3.8259 2.4142 47 1 1.7337 -2.6608 0.4077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773083835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:39 Heat of formation + Delta-G solvation = -34.668627 kcal Electronic energy + Delta-G solvation = -29424.729620 eV Core-core repulsion = 25541.757882 eV Total energy + Delta-G solvation = -3882.971738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.39936 -37.06113 -36.55136 -35.60644 -35.20583 -34.55399 -32.51365 -30.73317 -30.02055 -28.44927 -28.27186 -28.02815 -25.14847 -24.70469 -22.31923 -21.89077 -21.70049 -19.80876 -18.71986 -17.53796 -17.27119 -16.72627 -16.56398 -15.89302 -15.39158 -14.99745 -14.97266 -14.44253 -14.25597 -13.73482 -13.67637 -13.32199 -13.15308 -12.97069 -12.82421 -12.66312 -12.56272 -12.44282 -12.26585 -12.17659 -11.84326 -11.81706 -11.77610 -11.54667 -11.45162 -11.37279 -11.21680 -11.04684 -10.70451 -10.52823 -10.36144 -10.21834 -10.14443 -9.52649 -9.39800 -8.94439 -8.67515 -8.37334 -8.08067 -6.93508 -6.22433 -4.21810 1.31973 1.95735 2.06766 3.24645 3.28298 3.31758 3.36453 3.57180 4.19538 4.31867 4.38184 4.98167 5.04900 5.07449 5.11311 5.28246 5.32048 5.42659 5.44258 5.54374 5.59106 5.61958 5.72398 5.83764 5.95030 6.00650 6.00987 6.05326 6.09927 6.21649 6.26940 6.36179 6.47439 6.56925 6.67927 6.72695 6.82969 6.89110 6.97698 7.11480 7.31870 7.34982 7.40683 7.47721 7.52942 7.64479 7.80957 8.36235 8.82184 9.38951 10.87608 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.004787 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.005726 B = 5847.742581 C = 7409.582245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.174 3.826 3 H 0.142 0.858 4 N -1.119 6.119 5 S 2.789 3.211 6 O -1.003 7.003 7 O -0.981 6.981 8 N -0.993 5.993 9 C 0.108 3.892 10 C 0.209 3.791 11 C -0.551 4.551 12 H 0.095 0.905 13 C 0.082 3.918 14 N -0.886 5.886 15 Si 0.866 3.134 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.130 4.130 20 C -0.042 4.042 21 C -0.190 4.190 22 C 0.201 3.799 23 N -0.644 5.644 24 C 0.096 3.904 25 C 0.102 3.898 26 C -0.203 4.203 27 C -0.073 4.073 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.403 0.597 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.119 0.881 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.112 0.888 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -11.243 4.507 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 H 0.159 0.841 4 N -0.878 5.878 5 S 2.796 3.204 6 O -0.987 6.987 7 O -0.965 6.965 8 N -0.834 5.834 9 C -0.039 4.039 10 C 0.085 3.915 11 C -0.589 4.589 12 H 0.112 0.888 13 C -0.122 4.122 14 N -0.523 5.523 15 Si 0.693 3.307 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.133 4.133 20 C -0.061 4.061 21 C -0.212 4.212 22 C 0.102 3.898 23 N -0.358 5.358 24 C -0.048 4.048 25 C -0.042 4.042 26 C -0.226 4.226 27 C -0.092 4.092 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.236 0.764 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.130 0.870 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.440 -11.027 3.962 11.726 hybrid contribution 0.263 0.367 0.264 0.523 sum -0.177 -10.660 4.226 11.469 Atomic orbital electron populations 1.22264 0.95627 1.01381 1.02694 1.20211 0.93255 0.98934 0.80819 0.84107 1.56078 1.82217 1.18584 1.30907 1.01640 0.73361 0.72534 0.72839 1.93542 1.82225 1.63621 1.59326 1.93562 1.52620 1.65872 1.84434 1.57387 1.18447 1.27405 1.80145 1.21217 0.83842 0.98108 1.00714 1.19655 0.97903 0.78712 0.95256 1.21610 1.50782 0.97192 0.89344 0.88764 1.24806 0.94087 0.98600 0.94718 1.69814 1.48777 1.28816 1.04872 0.86990 0.79450 0.83938 0.80317 1.19690 1.21168 1.18935 1.19724 1.04207 0.93105 0.96270 1.21386 0.91955 1.02041 0.90744 1.20712 1.08262 0.91650 1.00578 1.17827 0.93960 0.91674 0.86364 1.46212 1.70988 1.04585 1.14029 1.21607 0.98559 0.96940 0.87675 1.21488 1.00909 0.80260 1.01542 1.20411 1.09389 0.98625 0.94150 1.20571 0.98012 0.93991 0.96619 0.91467 0.93276 0.91754 0.76407 0.93814 0.90643 0.92587 0.94588 0.93809 0.92383 0.82785 0.86306 0.93848 0.92150 0.91019 0.93228 0.91460 0.93246 0.87036 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.34 16 2 C 0.17 3.18 2.71 -69.08 -0.19 3.00 16 3 H 0.14 3.01 4.11 -51.93 -0.21 2.80 16 4 N -1.12 -19.24 5.48 -5.88 -0.03 -19.28 16 5 S 2.79 54.62 6.01 -107.50 -0.65 53.97 16 6 O -1.00 -20.51 17.21 -57.17 -0.98 -21.49 16 7 O -0.98 -21.69 15.95 -57.17 -0.91 -22.61 16 8 N -0.99 -19.77 3.23 -123.06 -0.40 -20.17 16 9 C 0.11 1.83 10.31 59.85 0.62 2.45 16 10 C 0.21 4.66 4.35 -5.19 -0.02 4.64 16 11 C -0.55 -13.34 7.46 -34.44 -0.26 -13.60 16 12 H 0.09 2.38 6.26 -52.49 -0.33 2.05 16 13 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -23.02 13.56 55.43 0.75 -22.26 16 15 Si 0.87 19.69 27.47 -169.99 -4.67 15.02 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 19 C -0.13 -2.29 4.92 -104.59 -0.51 -2.81 16 20 C -0.04 -0.80 8.97 -39.61 -0.36 -1.16 16 21 C -0.19 -3.25 9.21 -39.38 -0.36 -3.61 16 22 C 0.20 3.10 6.55 -83.79 -0.55 2.55 16 23 N -0.64 -8.16 3.41 -187.54 -0.64 -8.80 16 24 C 0.10 1.01 10.16 59.85 0.61 1.62 16 25 C 0.10 0.97 9.40 59.85 0.56 1.54 16 26 C -0.20 -3.01 9.31 -39.38 -0.37 -3.37 16 27 C -0.07 -1.13 9.15 -39.61 -0.36 -1.49 16 28 H 0.07 1.18 7.64 -51.93 -0.40 0.78 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.40 5.93 7.07 -34.47 -0.24 5.68 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 34 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 35 H 0.04 0.79 7.17 -51.93 -0.37 0.42 16 36 H 0.04 1.02 6.34 -51.93 -0.33 0.69 16 37 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 38 H 0.15 3.36 7.44 -52.49 -0.39 2.97 16 39 H 0.12 1.93 6.14 -52.49 -0.32 1.61 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 42 H 0.07 0.82 6.19 -51.93 -0.32 0.50 16 43 H 0.05 0.47 7.95 -51.93 -0.41 0.06 16 44 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 45 H 0.05 0.45 7.95 -51.93 -0.41 0.04 16 46 H 0.11 1.40 6.73 -52.49 -0.35 1.05 16 47 H 0.11 1.49 6.81 -52.49 -0.36 1.13 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -29.47 380.81 -9.68 -39.14 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.95 Total: 11.37 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.93 Total: -10.62 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -0.32 Total: -70.51 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.90 Total: -44.10 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.67 Total: 15.02 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.65 Total: 53.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.47 -9.68 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773083835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.474 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds