Wall clock time and date at job start Wed Apr 1 2020 00:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 N 1.46504 * 109.47124 * 119.99755 * 2 1 3 5 5 C 1.34773 * 120.00133 * 275.00081 * 4 2 1 6 6 O 1.21282 * 120.00097 * 0.02562 * 5 4 2 7 7 C 1.50707 * 120.00003 * 179.97438 * 5 4 2 8 8 C 1.50695 * 109.46927 * 180.02562 * 7 5 4 9 9 C 1.37639 * 120.13049 * 264.99732 * 8 7 5 10 10 C 1.38608 * 120.25012 * 179.97438 * 9 8 7 11 11 C 1.38659 * 120.50249 * 0.02934 * 10 9 8 12 12 C 1.37595 * 120.24703 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.12548 * 84.72749 * 8 7 5 14 14 C 1.41395 * 120.24884 * 359.97438 * 13 8 7 15 15 H 1.08001 * 119.99468 * 333.90084 * 14 13 8 16 16 C 1.39946 * 120.00176 * 153.89828 * 14 13 8 17 17 N 1.30818 * 119.99934 * 343.70724 * 16 14 13 18 18 Si 1.86803 * 119.99948 * 163.71533 * 16 14 13 19 19 H 1.48501 * 109.47069 * 89.99836 * 18 16 14 20 20 H 1.48494 * 109.46865 * 209.99926 * 18 16 14 21 21 H 1.48507 * 109.46984 * 330.00093 * 18 16 14 22 22 C 1.50699 * 109.47398 * 239.99946 * 2 1 3 23 23 N 1.31072 * 126.66173 * 285.02473 * 22 2 1 24 24 N 1.28839 * 107.99179 * 179.97438 * 23 22 2 25 25 N 1.28746 * 109.39560 * 359.97438 * 24 23 22 26 26 N 1.29014 * 108.80864 * 359.74581 * 25 24 23 27 27 C 1.46498 * 126.43807 * 180.24234 * 26 25 24 28 28 C 1.53003 * 117.49960 * 8.93140 * 27 26 25 29 29 C 1.53006 * 117.50076 * 300.27125 * 27 26 25 30 30 H 1.08999 * 109.47648 * 299.99675 * 1 2 3 31 31 H 1.09005 * 109.47435 * 60.00231 * 1 2 3 32 32 H 1.09007 * 109.47084 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99981 * 95.00318 * 4 2 1 34 34 H 1.09002 * 109.46787 * 299.99854 * 7 5 4 35 35 H 1.08995 * 109.47061 * 60.00126 * 7 5 4 36 36 H 1.08002 * 119.87470 * 0.02562 * 9 8 7 37 37 H 1.08001 * 119.74992 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.87523 * 179.97438 * 11 10 9 39 39 H 1.08003 * 120.12902 * 179.97438 * 12 11 10 40 40 H 0.97006 * 119.99989 * 179.97438 * 17 16 14 41 41 H 1.09007 * 115.55354 * 154.59887 * 27 26 25 42 42 H 1.09005 * 117.49558 * 359.97438 * 28 27 26 43 43 H 1.08997 * 117.49850 * 145.01981 * 28 27 26 44 44 H 1.08998 * 117.49434 * 214.97591 * 29 27 26 45 45 H 1.08992 * 117.49704 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6488 -0.7288 3.5878 8 6 2.6990 0.2395 4.7415 9 6 3.8714 0.8943 5.0434 10 6 3.9202 1.7858 6.1036 11 6 2.7916 2.0281 6.8719 12 6 1.6092 1.3839 6.5890 13 6 1.5460 0.4818 5.5106 14 6 0.3344 -0.1803 5.2061 15 1 0.1445 -0.5228 4.1996 16 6 -0.6186 -0.3919 6.2088 17 7 -0.2806 -0.2768 7.4673 18 14 -2.3735 -0.8388 5.7501 19 1 -2.5013 -2.3157 5.6623 20 1 -3.3028 -0.3222 6.7867 21 1 -2.7112 -0.2338 4.4366 22 6 2.0323 -0.7104 -1.2304 23 7 2.0363 -2.0042 -1.4404 24 7 2.5435 -2.2168 -2.6055 25 7 2.8627 -1.0920 -3.1445 26 7 2.5579 -0.1390 -2.3300 27 6 2.7513 1.2952 -2.5574 28 6 3.1772 1.7372 -3.9589 29 6 4.1798 1.7852 -2.8032 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1527 34 1 1.9758 -1.5505 3.8326 35 1 3.6479 -1.1213 3.3987 36 1 4.7564 0.7134 4.4514 37 1 4.8445 2.2949 6.3336 38 1 2.8412 2.7245 7.6959 39 1 0.7314 1.5738 7.1890 40 1 -0.9413 -0.4231 8.1623 41 1 2.0816 1.9536 -2.0039 42 1 3.3139 0.9607 -4.7117 43 1 2.7881 2.6863 -4.3273 44 1 4.4497 2.7660 -2.4117 45 1 4.9756 1.0406 -2.7952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791224246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:38 Heat of formation + Delta-G solvation = 107.106433 kcal Electronic energy + Delta-G solvation = -29202.500162 eV Core-core repulsion = 25222.525052 eV Total energy + Delta-G solvation = -3979.975110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.41213 -40.92999 -39.20526 -38.90568 -36.99128 -35.46309 -34.80422 -33.78724 -33.14396 -31.38170 -31.15775 -28.41066 -26.88876 -26.46648 -25.86578 -23.71058 -23.35167 -22.78345 -22.32927 -21.76947 -20.98040 -19.12035 -18.92153 -18.30495 -17.99378 -17.52446 -17.20160 -16.27471 -16.19453 -16.17396 -15.68924 -15.40706 -15.19310 -14.73976 -14.51697 -14.43991 -14.33991 -14.02675 -13.54855 -13.52159 -13.34714 -13.28202 -13.16118 -12.86182 -12.81888 -12.70726 -12.63781 -12.58645 -12.46539 -12.23632 -12.10189 -11.75477 -11.59849 -11.29039 -11.18411 -11.04137 -10.98788 -10.79043 -10.25527 -9.18688 -9.13135 -8.56269 -6.25399 -0.04675 0.72019 0.94554 1.03639 1.17218 1.39183 1.49645 1.56730 1.76630 2.15919 2.22656 2.47321 2.58839 2.82232 3.10245 3.38587 3.60244 3.67490 3.77127 3.91633 3.99520 4.12968 4.19641 4.34452 4.41917 4.44231 4.58809 4.61499 4.63989 4.65433 4.73431 4.76348 4.84694 4.88839 5.03783 5.07703 5.11020 5.15281 5.24163 5.35164 5.41142 5.58479 5.81151 6.07494 6.20451 6.25657 6.45854 6.51193 6.78066 7.03217 7.15212 7.31297 7.37683 8.39992 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003116 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.960394 B = 8983.286793 C =10247.820413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.237 3.763 3 H 0.118 0.882 4 N -0.721 5.721 5 C 0.530 3.470 6 O -0.556 6.556 7 C -0.071 4.071 8 C -0.185 4.185 9 C -0.090 4.090 10 C -0.242 4.242 11 C -0.117 4.117 12 C -0.193 4.193 13 C 0.098 3.902 14 C -0.480 4.480 15 H 0.075 0.925 16 C 0.037 3.963 17 N -0.827 5.827 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.262 1.262 22 C 0.186 3.814 23 N -0.311 5.311 24 N -0.103 5.103 25 N -0.097 5.097 26 N -0.260 5.260 27 C 0.012 3.988 28 C -0.137 4.137 29 C -0.156 4.156 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.414 0.586 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.185 0.815 42 H 0.104 0.896 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 3.490 -19.060 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.129 3.871 3 H 0.136 0.864 4 N -0.377 5.377 5 C 0.318 3.682 6 O -0.433 6.433 7 C -0.111 4.111 8 C -0.187 4.187 9 C -0.108 4.108 10 C -0.261 4.261 11 C -0.135 4.135 12 C -0.213 4.213 13 C 0.096 3.904 14 C -0.510 4.510 15 H 0.093 0.907 16 C -0.177 4.177 17 N -0.454 5.454 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.186 1.186 22 C -0.092 4.092 23 N -0.161 5.161 24 N -0.096 5.096 25 N -0.082 5.082 26 N -0.061 5.061 27 C -0.090 4.090 28 C -0.174 4.174 29 C -0.194 4.194 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.251 0.749 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.202 0.798 42 H 0.123 0.877 43 H 0.168 0.832 44 H 0.163 0.837 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.052 3.112 -19.560 20.216 hybrid contribution -0.874 0.038 0.738 1.145 sum 3.178 3.150 -18.822 19.346 Atomic orbital electron populations 1.22178 0.91834 1.03767 1.03867 1.19160 0.95359 0.95545 0.77034 0.86430 1.45956 1.68814 1.14768 1.08112 1.21032 0.76032 0.86962 0.84180 1.90669 1.49971 1.17679 1.84953 1.20281 1.03148 0.97966 0.89663 1.19463 0.93630 1.04305 1.01310 1.20719 0.96732 0.96404 0.96956 1.20696 0.98183 1.06240 1.01009 1.20941 0.93963 0.99519 0.99122 1.21306 0.97355 1.00487 1.02134 1.17705 0.92411 0.89509 0.90757 1.19636 1.00956 1.34082 0.96317 0.90715 1.26642 1.04073 0.92872 0.94162 1.69884 1.36954 1.37187 1.01347 0.85422 0.77059 0.79459 0.79178 1.18386 1.19525 1.18637 1.26041 0.99878 0.89942 0.93388 1.74917 1.18296 1.12493 1.10357 1.78625 1.12816 1.16143 1.02001 1.78743 1.18821 0.92237 1.18440 1.48114 1.37638 1.09869 1.10470 1.23143 1.04784 0.73280 1.07744 1.23588 0.99796 1.04919 0.89113 1.23657 0.89828 1.04566 1.01345 0.91460 0.89226 0.91401 0.74929 0.88389 0.87175 0.86629 0.86828 0.87855 0.88599 0.90471 0.79766 0.87710 0.83242 0.83735 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.47 71.98 0.68 -2.83 16 2 C 0.24 5.46 2.94 44.24 0.13 5.59 16 3 H 0.12 2.54 6.67 -2.39 -0.02 2.53 16 4 N -0.72 -19.38 5.07 -446.10 -2.26 -21.64 16 5 C 0.53 18.53 7.40 87.66 0.65 19.18 16 6 O -0.56 -23.66 15.70 -3.03 -0.05 -23.71 16 7 C -0.07 -2.59 5.18 29.10 0.15 -2.44 16 8 C -0.19 -8.54 4.43 -19.41 -0.09 -8.62 16 9 C -0.09 -3.89 9.66 22.22 0.21 -3.67 16 10 C -0.24 -10.66 10.05 22.46 0.23 -10.44 16 11 C -0.12 -5.62 10.02 22.22 0.22 -5.40 16 12 C -0.19 -10.44 8.69 22.73 0.20 -10.24 16 13 C 0.10 5.22 5.56 -21.29 -0.12 5.10 16 14 C -0.48 -25.12 8.14 23.46 0.19 -24.93 16 15 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 16 C 0.04 1.85 5.16 85.26 0.44 2.29 16 17 N -0.83 -43.38 10.96 21.83 0.24 -43.14 16 18 Si 0.97 38.40 29.59 68.60 2.03 40.43 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 C 0.19 4.30 6.91 138.13 0.95 5.25 16 23 N -0.31 -8.61 12.09 -50.45 -0.61 -9.22 16 24 N -0.10 -2.98 13.43 37.01 0.50 -2.48 16 25 N -0.10 -2.38 12.69 37.02 0.47 -1.91 16 26 N -0.26 -5.20 3.67 -317.80 -1.17 -6.37 16 27 C 0.01 0.14 6.43 44.99 0.29 0.43 16 28 C -0.14 -0.98 10.16 30.62 0.31 -0.67 16 29 C -0.16 -1.34 10.46 30.62 0.32 -1.02 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16 33 H 0.41 10.01 8.38 -92.71 -0.78 9.24 16 34 H 0.10 3.62 7.08 -2.39 -0.02 3.60 16 35 H 0.11 3.23 8.05 -2.39 -0.02 3.21 16 36 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 38 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.10 5.45 6.20 -2.91 -0.02 5.43 16 40 H 0.28 13.62 8.30 -92.70 -0.77 12.85 16 41 H 0.19 1.27 7.61 -2.38 -0.02 1.25 16 42 H 0.10 1.06 7.85 -2.38 -0.02 1.05 16 43 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.65 385.01 4.19 -66.46 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.26 Total: 34.02 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 4.77 Total: -32.43 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.83 Total: -84.77 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -70.65 4.19 -66.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791224246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.566 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds