Wall clock time and date at job start Wed Apr 1 2020 00:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47907 * 2 1 4 4 N 1.46499 * 109.47325 * 239.99293 * 2 1 3 5 5 C 1.34774 * 120.00005 * 85.00669 * 4 2 1 6 6 O 1.21278 * 119.99526 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00256 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.47556 * 179.97438 * 7 5 4 9 9 C 1.37630 * 120.12796 * 265.00188 * 8 7 5 10 10 C 1.38619 * 120.24694 * 180.29070 * 9 8 7 11 11 C 1.38655 * 120.49866 * 359.44683 * 10 9 8 12 12 C 1.37604 * 120.25111 * 0.55480 * 11 10 9 13 13 C 1.40697 * 120.12236 * 85.01918 * 8 7 5 14 14 C 1.41390 * 120.25030 * 359.96070 * 13 8 7 15 15 H 1.08004 * 119.99865 * 334.08548 * 14 13 8 16 16 C 1.39940 * 120.00399 * 154.08926 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.61139 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.62242 * 16 14 13 19 19 H 1.48494 * 109.47012 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47407 * 119.99663 * 18 16 14 21 21 H 1.48508 * 109.46756 * 239.99409 * 18 16 14 22 22 C 1.50708 * 109.46531 * 119.99732 * 2 1 3 23 23 N 1.31073 * 126.65724 * 74.68367 * 22 2 1 24 24 N 1.28851 * 107.98624 * 179.89352 * 23 22 2 25 25 N 1.28732 * 109.39553 * 0.37918 * 24 23 22 26 26 N 1.29016 * 108.81377 * 359.76282 * 25 24 23 27 27 C 1.46501 * 126.44305 * 179.97438 * 26 25 24 28 28 C 1.53001 * 117.49549 * 8.77873 * 27 26 25 29 29 C 1.52992 * 117.50158 * 300.11909 * 27 26 25 30 30 H 1.09000 * 109.47479 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47260 * 300.00720 * 1 2 3 32 32 H 1.09007 * 109.46615 * 60.00381 * 1 2 3 33 33 H 0.97004 * 120.00509 * 265.00730 * 4 2 1 34 34 H 1.09003 * 109.47324 * 59.99832 * 7 5 4 35 35 H 1.09000 * 109.47440 * 299.99911 * 7 5 4 36 36 H 1.07995 * 119.88141 * 0.02562 * 9 8 7 37 37 H 1.07999 * 119.74930 * 179.69896 * 10 9 8 38 38 H 1.08004 * 119.87487 * 180.29445 * 11 10 9 39 39 H 1.07992 * 120.12974 * 179.74704 * 12 11 10 40 40 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 41 41 H 1.09001 * 115.54966 * 154.43879 * 27 26 25 42 42 H 1.09003 * 117.50141 * 0.02562 * 28 27 26 43 43 H 1.08998 * 117.49579 * 145.01536 * 28 27 26 44 44 H 1.09002 * 117.49997 * 214.97758 * 29 27 26 45 45 H 1.09006 * 117.49661 * 359.97033 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0185 -2.3571 6 8 1.8584 1.1581 -2.4117 7 6 2.6491 -0.7291 -3.5876 8 6 2.6995 0.2390 -4.7414 9 6 1.6441 0.3210 -5.6210 10 6 1.6904 1.2063 -6.6866 11 6 2.7928 2.0264 -6.8728 12 6 3.8594 1.9614 -6.0059 13 6 3.8258 1.0621 -4.9237 14 6 4.9158 0.9870 -4.0263 15 1 4.7581 0.6501 -3.0123 16 6 6.1988 1.3491 -4.4517 17 7 6.4611 1.4462 -5.7297 18 14 7.5371 1.6936 -3.1948 19 1 6.9885 1.5162 -1.8264 20 1 8.6655 0.7509 -3.4022 21 1 8.0211 3.0882 -3.3568 22 6 2.0322 -0.7104 1.2306 23 7 2.0311 -2.0039 1.4427 24 7 2.5427 -2.2167 2.6060 25 7 2.8627 -1.0921 3.1446 26 7 2.5636 -0.1395 2.3276 27 6 2.7639 1.2943 2.5518 28 6 3.5713 1.7107 3.7830 29 6 2.0563 1.9274 3.7515 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6320 -1.1525 34 1 1.9761 -1.5509 -3.8324 35 1 3.6481 -1.1218 -3.3984 36 1 0.7784 -0.3098 -5.4829 37 1 0.8598 1.2605 -7.3747 38 1 2.8162 2.7158 -7.7038 39 1 4.7188 2.5981 -6.1551 40 1 7.3503 1.6975 -6.0247 41 1 2.8695 1.9006 1.6522 42 1 3.9537 0.9178 4.4259 43 1 4.2075 2.5911 3.6934 44 1 1.6965 2.9504 3.6412 45 1 1.4412 1.2772 4.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791224247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:41 Heat of formation + Delta-G solvation = 106.639752 kcal Electronic energy + Delta-G solvation = -29309.673016 eV Core-core repulsion = 25329.677670 eV Total energy + Delta-G solvation = -3979.995347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.41912 -40.93527 -39.21474 -38.92136 -36.99191 -35.48354 -34.81202 -33.79228 -33.15143 -31.38023 -31.16408 -28.41827 -26.88932 -26.47544 -25.87735 -23.76994 -23.33232 -22.79211 -22.32819 -21.76333 -20.98707 -19.17265 -18.97928 -18.18772 -18.07169 -17.57590 -17.15094 -16.36292 -16.22466 -16.12614 -15.69879 -15.43027 -15.16654 -14.73270 -14.55925 -14.46212 -14.37350 -14.00702 -13.56616 -13.49716 -13.36961 -13.30283 -13.14138 -12.90572 -12.82703 -12.75573 -12.64502 -12.57806 -12.47660 -12.23894 -12.11693 -11.77508 -11.59877 -11.29494 -11.19072 -11.06755 -11.02933 -10.79051 -10.26038 -9.19635 -9.13816 -8.58828 -6.27820 -0.04728 0.70783 0.93673 1.01280 1.16356 1.34355 1.46361 1.51699 1.76636 2.16603 2.18498 2.44225 2.57405 2.79612 3.09439 3.37449 3.56029 3.66999 3.76425 3.92327 4.00861 4.12702 4.19585 4.34383 4.42610 4.44722 4.59041 4.60067 4.64378 4.66207 4.74320 4.77900 4.84679 4.87222 5.02538 5.06611 5.09905 5.14990 5.21744 5.34709 5.40236 5.57530 5.79816 6.06590 6.18888 6.25084 6.44444 6.50701 6.76494 7.01071 7.13786 7.30602 7.36576 8.37770 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.003529 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.099998 B = 7932.256380 C = 9359.999427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.235 3.765 3 H 0.110 0.890 4 N -0.722 5.722 5 C 0.530 3.470 6 O -0.557 6.557 7 C -0.071 4.071 8 C -0.184 4.184 9 C -0.089 4.089 10 C -0.241 4.241 11 C -0.117 4.117 12 C -0.193 4.193 13 C 0.098 3.902 14 C -0.481 4.481 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.826 5.826 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.266 1.266 22 C 0.184 3.816 23 N -0.308 5.308 24 N -0.102 5.102 25 N -0.098 5.098 26 N -0.261 5.261 27 C 0.008 3.992 28 C -0.147 4.147 29 C -0.138 4.138 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.175 0.825 42 H 0.105 0.895 43 H 0.143 0.857 44 H 0.150 0.850 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 0.814 16.517 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.126 3.874 3 H 0.128 0.872 4 N -0.377 5.377 5 C 0.318 3.682 6 O -0.433 6.433 7 C -0.111 4.111 8 C -0.186 4.186 9 C -0.108 4.108 10 C -0.260 4.260 11 C -0.135 4.135 12 C -0.212 4.212 13 C 0.096 3.904 14 C -0.511 4.511 15 H 0.089 0.911 16 C -0.177 4.177 17 N -0.453 5.453 18 Si 0.789 3.211 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.191 1.191 22 C -0.095 4.095 23 N -0.158 5.158 24 N -0.095 5.095 25 N -0.084 5.084 26 N -0.062 5.062 27 C -0.094 4.094 28 C -0.185 4.185 29 C -0.177 4.177 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.192 0.808 42 H 0.123 0.877 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.015 0.508 17.089 18.480 hybrid contribution 0.967 0.495 -0.294 1.125 sum -6.048 1.002 16.795 17.879 Atomic orbital electron populations 1.22124 0.90784 1.03935 1.04032 1.19224 0.96088 0.95167 0.76886 0.87233 1.45977 1.68868 1.14774 1.08100 1.21032 0.75800 0.86947 0.84435 1.90666 1.50108 1.17327 1.85221 1.20287 1.03131 0.97630 0.90036 1.19469 0.97475 1.02119 0.99565 1.20742 0.96885 0.98307 0.94818 1.20723 0.99617 1.03513 1.02157 1.20949 0.94583 0.99376 0.98642 1.21293 0.98437 1.02066 0.99412 1.17700 0.92111 0.88906 0.91719 1.19617 0.92325 1.40883 0.98266 0.91106 1.26607 1.01805 0.92119 0.97142 1.69884 1.23276 1.35337 1.16780 0.85388 0.77668 0.78957 0.79112 1.18645 1.19093 1.19125 1.26130 0.99580 0.90073 0.93681 1.74895 1.18337 1.12288 1.10327 1.78604 1.12727 1.16078 1.02115 1.78743 1.18859 0.92206 1.18587 1.48090 1.37424 1.09838 1.10822 1.23060 1.13758 0.73193 0.99379 1.23583 0.95628 1.04515 0.94775 1.23677 0.95472 1.03733 0.94775 0.90959 0.89546 0.90777 0.74919 0.86752 0.88766 0.86383 0.86736 0.87821 0.88625 0.90450 0.80833 0.87686 0.83951 0.83254 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.47 71.98 0.68 -2.23 16 2 C 0.23 5.45 2.96 44.25 0.13 5.58 16 3 H 0.11 2.58 6.42 -2.39 -0.02 2.56 16 4 N -0.72 -19.47 5.07 -446.10 -2.26 -21.73 16 5 C 0.53 18.57 7.43 87.66 0.65 19.22 16 6 O -0.56 -23.71 15.70 -3.02 -0.05 -23.75 16 7 C -0.07 -2.61 5.18 29.10 0.15 -2.45 16 8 C -0.18 -8.49 4.43 -19.41 -0.09 -8.58 16 9 C -0.09 -3.85 9.66 22.22 0.21 -3.64 16 10 C -0.24 -10.59 10.05 22.46 0.23 -10.36 16 11 C -0.12 -5.61 10.02 22.22 0.22 -5.39 16 12 C -0.19 -10.37 8.68 22.73 0.20 -10.17 16 13 C 0.10 5.19 5.56 -21.29 -0.12 5.07 16 14 C -0.48 -25.23 8.14 23.46 0.19 -25.04 16 15 H 0.07 3.60 6.68 -2.91 -0.02 3.58 16 16 C 0.04 1.89 5.16 85.26 0.44 2.33 16 17 N -0.83 -43.24 10.97 21.82 0.24 -43.00 16 18 Si 0.97 38.43 29.59 68.60 2.03 40.46 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 C 0.18 4.46 6.91 138.14 0.95 5.41 16 23 N -0.31 -8.71 12.10 -50.44 -0.61 -9.32 16 24 N -0.10 -3.07 13.43 37.01 0.50 -2.57 16 25 N -0.10 -2.58 12.69 37.02 0.47 -2.11 16 26 N -0.26 -5.74 3.67 -317.82 -1.17 -6.91 16 27 C 0.01 0.11 6.59 44.99 0.30 0.41 16 28 C -0.15 -1.50 10.16 30.62 0.31 -1.19 16 29 C -0.14 -1.16 10.46 30.62 0.32 -0.84 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 33 H 0.41 10.05 8.38 -92.71 -0.78 9.27 16 34 H 0.11 3.31 8.05 -2.39 -0.02 3.29 16 35 H 0.09 3.52 7.06 -2.39 -0.02 3.50 16 36 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.10 5.42 6.22 -2.91 -0.02 5.40 16 40 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 41 H 0.17 2.08 7.23 -2.39 -0.02 2.06 16 42 H 0.10 1.36 7.85 -2.39 -0.02 1.35 16 43 H 0.14 0.82 8.14 -2.39 -0.02 0.81 16 44 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -70.36 384.60 4.20 -66.17 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.26 Total: 34.65 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.78 Total: -31.87 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.83 Total: -85.65 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -70.36 4.20 -66.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791224247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.806 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds