Wall clock time and date at job start Wed Apr 1 2020 01:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46945 * 2 1 4 4 C 1.46499 * 120.00036 * 274.05754 * 3 2 1 5 5 C 1.50707 * 109.46861 * 280.93219 * 4 3 2 6 6 H 1.07993 * 119.99909 * 3.26311 * 5 4 3 7 7 C 1.37880 * 119.99685 * 183.25791 * 5 4 3 8 8 N 1.31512 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99682 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46992 * 90.00319 * 9 7 5 11 11 H 1.48500 * 109.46763 * 209.99984 * 9 7 5 12 12 H 1.48497 * 109.47401 * 329.99655 * 9 7 5 13 13 S 1.65600 * 119.99907 * 94.06373 * 3 2 1 14 14 O 1.42104 * 106.40044 * 336.45938 * 13 3 2 15 15 O 1.42102 * 106.39914 * 203.54430 * 13 3 2 16 16 N 1.65598 * 107.22310 * 89.99981 * 13 3 2 17 17 C 1.46498 * 119.99540 * 65.59703 * 16 13 3 18 18 C 1.50701 * 109.47023 * 164.32730 * 17 16 13 19 19 C 1.38287 * 119.92670 * 89.99528 * 18 17 16 20 20 C 1.38099 * 120.07529 * 179.97438 * 19 18 17 21 21 C 1.38916 * 119.92823 * 0.02562 * 20 19 18 22 22 N 1.39671 * 120.07508 * 179.97438 * 21 20 19 23 23 C 1.46502 * 120.00289 * 359.97438 * 22 21 20 24 24 C 1.46495 * 119.99605 * 179.97438 * 22 21 20 25 25 C 1.38912 * 119.84678 * 0.24456 * 21 20 19 26 26 C 1.38105 * 119.92309 * 359.51879 * 25 21 20 27 27 H 1.09002 * 109.47507 * 185.04637 * 1 2 3 28 28 H 1.09005 * 109.47409 * 305.05356 * 1 2 3 29 29 H 1.09004 * 109.47100 * 65.05365 * 1 2 3 30 30 H 1.08994 * 109.47133 * 239.99724 * 2 1 3 31 31 H 1.09002 * 109.46548 * 119.99827 * 2 1 3 32 32 H 1.08997 * 109.46962 * 40.93158 * 4 3 2 33 33 H 1.08999 * 109.46858 * 160.93360 * 4 3 2 34 34 H 0.97005 * 120.00006 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99844 * 245.59594 * 16 13 3 36 36 H 1.08999 * 109.47441 * 44.32942 * 17 16 13 37 37 H 1.09002 * 109.47305 * 284.32236 * 17 16 13 38 38 H 1.07999 * 119.95818 * 0.03002 * 19 18 17 39 39 H 1.08001 * 120.03717 * 179.97438 * 20 19 18 40 40 H 1.09008 * 109.46888 * 59.99882 * 23 22 21 41 41 H 1.08997 * 109.47213 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.46909 * 300.00133 * 23 22 21 43 43 H 1.09003 * 109.47276 * 90.00532 * 24 22 21 44 44 H 1.09009 * 109.47400 * 209.99935 * 24 22 21 45 45 H 1.08997 * 109.47808 * 330.00034 * 24 22 21 46 46 H 1.07995 * 120.03680 * 179.75268 * 25 21 20 47 47 H 1.08008 * 119.96201 * 180.23206 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1778 2.1018 -1.2655 5 6 3.4577 1.6682 -1.9326 6 1 4.0625 0.8920 -1.4875 7 6 3.8565 2.2623 -3.1111 8 7 3.1202 3.2078 -3.6529 9 14 5.4426 1.7244 -3.9383 10 1 5.1564 0.6155 -4.8837 11 1 6.0266 2.8699 -4.6811 12 1 6.4056 1.2601 -2.9076 13 16 2.3901 2.1280 1.4305 14 8 1.6491 1.4547 2.4390 15 8 2.2870 3.5251 1.1924 16 7 3.9877 1.8232 1.7420 17 6 5.0227 2.3681 0.8600 18 6 6.3617 2.2869 1.5468 19 6 7.1488 1.1603 1.3928 20 6 8.3766 1.0828 2.0203 21 6 8.8204 2.1379 2.8074 22 7 10.0614 2.0625 3.4439 23 6 10.8964 0.8696 3.2823 24 6 10.5281 3.1764 4.2731 25 6 8.0248 3.2657 2.9645 26 6 6.8002 3.3387 2.3302 27 1 -0.3634 -1.0237 0.0904 28 1 -0.3634 0.5902 0.8413 29 1 -0.3633 0.4335 -0.9318 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.3342 1.8796 -1.9189 33 1 2.2144 3.1737 -1.0712 34 1 3.4005 3.6256 -4.4822 35 1 4.2381 1.2840 2.5084 36 1 4.7943 3.4091 0.6315 37 1 5.0530 1.7913 -0.0644 38 1 6.8033 0.3407 0.7803 39 1 8.9906 0.2026 1.8999 40 1 11.1328 0.7319 2.2271 41 1 11.8194 0.9927 3.8488 42 1 10.3579 -0.0034 3.6510 43 1 10.1965 3.0281 5.3008 44 1 11.6170 3.2189 4.2453 45 1 10.1182 4.1111 3.8904 46 1 8.3651 4.0860 3.5790 47 1 6.1827 4.2168 2.4489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799999027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:19 Heat of formation + Delta-G solvation = -44.082547 kcal Electronic energy + Delta-G solvation = -28426.821368 eV Core-core repulsion = 24543.441412 eV Total energy + Delta-G solvation = -3883.379956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.63945 -36.85920 -36.51963 -35.96994 -35.11983 -34.25180 -32.68875 -31.07651 -30.05845 -29.88215 -28.32282 -26.62233 -25.97221 -23.34230 -23.11676 -22.25515 -21.64320 -20.37046 -18.72509 -17.51889 -17.02792 -16.76723 -16.44002 -15.86552 -15.67975 -15.24507 -15.13114 -14.74288 -14.34121 -14.05708 -13.78508 -13.62780 -13.46053 -13.27852 -12.89785 -12.84342 -12.51037 -12.43278 -12.32335 -12.13430 -12.01686 -11.95720 -11.75461 -11.63782 -11.35618 -11.25640 -11.04531 -10.91187 -10.81800 -10.72761 -10.47667 -10.33966 -9.98895 -9.77418 -9.72410 -8.86646 -8.77491 -8.49241 -8.01371 -7.28837 -6.10177 -4.16667 1.31392 1.57892 1.73786 2.98863 3.25764 3.33964 3.34561 3.63765 4.02748 4.29994 4.36903 4.74263 4.80871 5.02465 5.05321 5.07403 5.13295 5.23516 5.27220 5.35054 5.43486 5.44463 5.48542 5.60056 5.62032 5.76904 5.81430 5.86656 5.99617 6.08712 6.17333 6.22295 6.36707 6.40359 6.54440 6.58539 6.71667 6.77068 6.93835 6.98052 7.14464 7.36961 7.43632 7.44843 7.53471 7.73867 7.87647 8.17550 8.87733 9.48875 10.97570 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.003846 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.583069 B = 7277.630070 C = 8908.627862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.539 4.539 6 H 0.065 0.935 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.271 1.271 13 S 2.785 3.215 14 O -1.002 7.002 15 O -0.982 6.982 16 N -1.126 6.126 17 C 0.160 3.840 18 C -0.141 4.141 19 C -0.055 4.055 20 C -0.197 4.197 21 C 0.209 3.791 22 N -0.643 5.643 23 C 0.098 3.902 24 C 0.095 3.905 25 C -0.199 4.199 26 C -0.056 4.056 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.120 0.880 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.988 -4.554 12.731 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.195 1.195 13 S 2.793 3.207 14 O -0.987 6.987 15 O -0.966 6.966 16 N -0.884 5.884 17 C 0.035 3.965 18 C -0.144 4.144 19 C -0.074 4.074 20 C -0.219 4.219 21 C 0.108 3.892 22 N -0.356 5.356 23 C -0.045 4.045 24 C -0.048 4.048 25 C -0.222 4.222 26 C -0.076 4.076 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.138 0.862 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.490 -3.775 13.011 17.764 hybrid contribution 1.408 -0.734 -0.551 1.681 sum 12.899 -4.508 12.460 18.492 Atomic orbital electron populations 1.22203 0.97085 1.01246 1.02303 1.20942 0.93501 0.82949 1.02081 1.57721 1.78807 1.22969 1.23878 1.19204 0.97130 0.92565 0.79006 1.21527 1.07320 1.21257 1.07710 0.91723 1.24938 0.97020 0.94737 0.97002 1.69935 1.38077 1.24886 1.19597 0.86647 0.83656 0.78250 0.79815 1.20712 1.21163 1.19522 1.01709 0.72674 0.73692 0.72598 1.93539 1.69972 1.76489 1.58673 1.93568 1.86018 1.31318 1.85646 1.56035 1.25045 1.68282 1.39050 1.20307 0.83142 1.00666 0.92389 1.19807 0.97374 0.95324 1.01930 1.20905 0.92819 0.97121 0.96593 1.20593 0.98585 0.99041 1.03713 1.17818 0.85155 0.94196 0.92039 1.46273 1.17441 1.18504 1.53358 1.21555 0.94226 0.87436 1.01289 1.21623 0.99278 0.89777 0.94160 1.20634 0.96395 0.98206 1.06930 1.20924 0.94638 0.97970 0.94033 0.92474 0.92699 0.92194 0.90137 0.92036 0.94825 0.92777 0.92589 0.76187 0.89967 0.88557 0.85763 0.86391 0.92891 0.91194 0.92920 0.93647 0.91843 0.91284 0.86249 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.30 6.01 -4.04 -0.02 2.27 16 3 N -0.99 -20.20 2.84 -115.66 -0.33 -20.53 16 4 C 0.24 5.88 5.48 -5.19 -0.03 5.86 16 5 C -0.54 -13.45 7.94 -34.44 -0.27 -13.72 16 6 H 0.06 1.54 6.74 -52.49 -0.35 1.18 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 9 Si 0.89 20.16 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 S 2.79 55.45 6.11 -107.50 -0.66 54.80 16 14 O -1.00 -20.63 17.09 -57.17 -0.98 -21.60 16 15 O -0.98 -22.88 16.09 -57.17 -0.92 -23.80 16 16 N -1.13 -18.91 6.04 -11.66 -0.07 -18.98 16 17 C 0.16 2.81 6.28 -5.19 -0.03 2.78 16 18 C -0.14 -2.16 5.28 -104.59 -0.55 -2.71 16 19 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 20 C -0.20 -2.53 9.31 -39.38 -0.37 -2.89 16 21 C 0.21 2.61 6.55 -83.79 -0.55 2.06 16 22 N -0.64 -6.48 3.41 -187.55 -0.64 -7.12 16 23 C 0.10 0.75 9.40 59.85 0.56 1.32 16 24 C 0.09 0.72 10.15 59.84 0.61 1.33 16 25 C -0.20 -2.54 9.20 -39.38 -0.36 -2.90 16 26 C -0.06 -0.80 9.69 -39.61 -0.38 -1.18 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 31 H 0.06 0.96 7.64 -51.93 -0.40 0.56 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.45 6.83 -51.93 -0.35 1.10 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.41 5.87 8.65 -34.47 -0.30 5.57 16 36 H 0.08 1.56 7.67 -51.93 -0.40 1.16 16 37 H 0.10 1.84 5.53 -51.93 -0.29 1.55 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.12 1.30 6.73 -52.49 -0.35 0.94 16 40 H 0.05 0.41 7.95 -51.92 -0.41 0.00 16 41 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 42 H 0.05 0.39 7.95 -51.93 -0.41 -0.02 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.37 7.92 -51.92 -0.41 -0.05 16 45 H 0.07 0.52 6.21 -51.93 -0.32 0.20 16 46 H 0.12 1.27 6.15 -52.49 -0.32 0.95 16 47 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -31.84 393.33 -10.69 -42.53 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.24 Total: 7.39 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.50 Total: -9.66 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -0.30 Total: -70.72 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.90 Total: -45.41 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 55.45 SS G_CDS: -0.66 Total: 54.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.84 -10.69 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799999027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds