Wall clock time and date at job start Wed Apr 1 2020 01:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46945 * 2 1 4 4 C 1.46499 * 120.00036 * 274.05754 * 3 2 1 5 5 C 1.50707 * 109.46861 * 280.93219 * 4 3 2 6 6 H 1.07993 * 119.99909 * 3.26311 * 5 4 3 7 7 C 1.37880 * 119.99685 * 183.25791 * 5 4 3 8 8 N 1.31512 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99682 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46992 * 90.00319 * 9 7 5 11 11 H 1.48500 * 109.46763 * 209.99984 * 9 7 5 12 12 H 1.48497 * 109.47401 * 329.99655 * 9 7 5 13 13 S 1.65600 * 119.99907 * 94.06373 * 3 2 1 14 14 O 1.42104 * 106.40044 * 336.45938 * 13 3 2 15 15 O 1.42102 * 106.39914 * 203.54430 * 13 3 2 16 16 N 1.65598 * 107.22310 * 89.99981 * 13 3 2 17 17 C 1.46498 * 119.99540 * 65.59703 * 16 13 3 18 18 C 1.50701 * 109.47023 * 164.32730 * 17 16 13 19 19 C 1.38287 * 119.92670 * 89.99528 * 18 17 16 20 20 C 1.38099 * 120.07529 * 179.97438 * 19 18 17 21 21 C 1.38916 * 119.92823 * 0.02562 * 20 19 18 22 22 N 1.39671 * 120.07508 * 179.97438 * 21 20 19 23 23 C 1.46502 * 120.00289 * 359.97438 * 22 21 20 24 24 C 1.46495 * 119.99605 * 179.97438 * 22 21 20 25 25 C 1.38912 * 119.84678 * 0.24456 * 21 20 19 26 26 C 1.38105 * 119.92309 * 359.51879 * 25 21 20 27 27 H 1.09002 * 109.47507 * 185.04637 * 1 2 3 28 28 H 1.09005 * 109.47409 * 305.05356 * 1 2 3 29 29 H 1.09004 * 109.47100 * 65.05365 * 1 2 3 30 30 H 1.08994 * 109.47133 * 239.99724 * 2 1 3 31 31 H 1.09002 * 109.46548 * 119.99827 * 2 1 3 32 32 H 1.08997 * 109.46962 * 40.93158 * 4 3 2 33 33 H 1.08999 * 109.46858 * 160.93360 * 4 3 2 34 34 H 0.97005 * 120.00006 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99844 * 245.59594 * 16 13 3 36 36 H 1.08999 * 109.47441 * 44.32942 * 17 16 13 37 37 H 1.09002 * 109.47305 * 284.32236 * 17 16 13 38 38 H 1.07999 * 119.95818 * 0.03002 * 19 18 17 39 39 H 1.08001 * 120.03717 * 179.97438 * 20 19 18 40 40 H 1.09008 * 109.46888 * 59.99882 * 23 22 21 41 41 H 1.08997 * 109.47213 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.46909 * 300.00133 * 23 22 21 43 43 H 1.09003 * 109.47276 * 90.00532 * 24 22 21 44 44 H 1.09009 * 109.47400 * 209.99935 * 24 22 21 45 45 H 1.08997 * 109.47808 * 330.00034 * 24 22 21 46 46 H 1.07995 * 120.03680 * 179.75268 * 25 21 20 47 47 H 1.08008 * 119.96201 * 180.23206 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1778 2.1018 -1.2655 5 6 3.4577 1.6682 -1.9326 6 1 4.0625 0.8920 -1.4875 7 6 3.8565 2.2623 -3.1111 8 7 3.1202 3.2078 -3.6529 9 14 5.4426 1.7244 -3.9383 10 1 5.1564 0.6155 -4.8837 11 1 6.0266 2.8699 -4.6811 12 1 6.4056 1.2601 -2.9076 13 16 2.3901 2.1280 1.4305 14 8 1.6491 1.4547 2.4390 15 8 2.2870 3.5251 1.1924 16 7 3.9877 1.8232 1.7420 17 6 5.0227 2.3681 0.8600 18 6 6.3617 2.2869 1.5468 19 6 7.1488 1.1603 1.3928 20 6 8.3766 1.0828 2.0203 21 6 8.8204 2.1379 2.8074 22 7 10.0614 2.0625 3.4439 23 6 10.8964 0.8696 3.2823 24 6 10.5281 3.1764 4.2731 25 6 8.0248 3.2657 2.9645 26 6 6.8002 3.3387 2.3302 27 1 -0.3634 -1.0237 0.0904 28 1 -0.3634 0.5902 0.8413 29 1 -0.3633 0.4335 -0.9318 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.3342 1.8796 -1.9189 33 1 2.2144 3.1737 -1.0712 34 1 3.4005 3.6256 -4.4822 35 1 4.2381 1.2840 2.5084 36 1 4.7943 3.4091 0.6315 37 1 5.0530 1.7913 -0.0644 38 1 6.8033 0.3407 0.7803 39 1 8.9906 0.2026 1.8999 40 1 11.1328 0.7319 2.2271 41 1 11.8194 0.9927 3.8488 42 1 10.3579 -0.0034 3.6510 43 1 10.1965 3.0281 5.3008 44 1 11.6170 3.2189 4.2453 45 1 10.1182 4.1111 3.8904 46 1 8.3651 4.0860 3.5790 47 1 6.1827 4.2168 2.4489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799999027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:18 Heat of formation + Delta-G solvation = -65.230642 kcal Electronic energy + Delta-G solvation = -28427.738418 eV Core-core repulsion = 24543.441412 eV Total energy + Delta-G solvation = -3884.297006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61195 -38.30803 -37.78473 -37.58749 -36.84997 -35.50164 -34.62526 -32.04289 -31.48447 -31.12252 -28.97047 -28.46713 -27.05407 -24.90053 -24.34954 -23.26173 -23.22663 -21.37506 -20.31576 -18.78233 -18.53746 -18.40396 -18.07520 -17.25091 -16.81618 -16.65656 -16.19799 -15.90960 -15.69568 -15.36942 -15.01331 -14.82821 -14.75361 -14.55189 -14.38668 -13.81186 -13.71406 -13.67100 -13.53046 -13.43797 -13.35167 -13.14795 -13.08564 -12.99465 -12.93411 -12.77406 -12.68556 -12.65863 -12.23591 -12.13303 -11.98959 -11.70321 -11.65776 -11.54162 -10.66178 -10.52762 -10.33811 -9.81462 -9.74070 -8.17094 -8.11213 -6.23800 -0.26617 0.55799 0.62624 1.46449 1.48730 1.57560 2.08934 2.26901 2.47066 2.65560 2.99583 3.21247 3.49758 3.92318 3.97663 4.03458 4.11022 4.22039 4.33260 4.44951 4.48318 4.52509 4.54841 4.58432 4.64662 4.74080 4.78999 4.84563 4.88884 4.91483 4.96872 5.02337 5.12690 5.19653 5.20337 5.32564 5.37560 5.44249 5.49672 5.58134 5.82740 5.86545 5.93409 5.94961 6.17116 6.27907 6.38305 6.55430 6.88021 7.45660 8.96961 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.003846 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.583069 B = 7277.630070 C = 8908.627862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.259 3.741 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.015 3.985 8 N -0.929 5.929 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.255 1.255 13 S 2.798 3.202 14 O -1.006 7.006 15 O -1.019 7.019 16 N -1.109 6.109 17 C 0.168 3.832 18 C -0.162 4.162 19 C -0.060 4.060 20 C -0.201 4.201 21 C 0.209 3.791 22 N -0.645 5.645 23 C 0.091 3.909 24 C 0.088 3.912 25 C -0.203 4.203 26 C -0.066 4.066 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.420 0.580 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.139 0.861 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.648 -6.430 14.093 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.569 5.569 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.179 1.179 13 S 2.807 3.193 14 O -0.990 6.990 15 O -1.003 7.003 16 N -0.871 5.871 17 C 0.043 3.957 18 C -0.166 4.166 19 C -0.079 4.079 20 C -0.224 4.224 21 C 0.106 3.894 22 N -0.356 5.356 23 C -0.051 4.051 24 C -0.055 4.055 25 C -0.226 4.226 26 C -0.085 4.085 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.156 0.844 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.168 -5.690 14.423 21.003 hybrid contribution 0.653 -0.169 -0.852 1.087 sum 14.821 -5.859 13.571 20.932 Atomic orbital electron populations 1.22194 0.96075 1.03115 1.01258 1.21235 0.94479 0.81289 1.03322 1.57619 1.79452 1.24127 1.22423 1.18755 0.96472 0.91125 0.80167 1.21792 1.07252 1.20840 1.07333 0.90421 1.25738 1.00081 0.94782 0.97852 1.70073 1.40081 1.26513 1.20197 0.85664 0.80145 0.77622 0.79021 1.20109 1.21756 1.17852 1.01149 0.73174 0.72757 0.72232 1.93524 1.70648 1.76288 1.58572 1.93521 1.86801 1.33883 1.86104 1.55695 1.23720 1.68249 1.39420 1.20105 0.84595 0.98799 0.92208 1.19614 0.96591 0.96780 1.03627 1.20977 0.93318 0.96759 0.96879 1.20780 0.98235 0.99893 1.03445 1.18005 0.86069 0.93775 0.91546 1.46590 1.16622 1.19761 1.52637 1.21745 0.94889 0.86631 1.01842 1.21814 1.00697 0.88926 0.94036 1.20813 0.95806 0.99071 1.06880 1.20993 0.95496 0.97708 0.94313 0.89108 0.93728 0.93295 0.89873 0.89724 0.96621 0.96141 0.92740 0.74542 0.92351 0.90101 0.85378 0.84510 0.92852 0.88770 0.92653 0.92926 0.89641 0.91433 0.84376 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.21 10.24 71.98 0.74 -4.48 16 2 C 0.12 4.13 6.01 86.38 0.52 4.65 16 3 N -1.00 -41.00 2.84 -519.85 -1.48 -42.48 16 4 C 0.26 12.95 5.48 85.64 0.47 13.42 16 5 C -0.53 -26.91 7.94 25.60 0.20 -26.71 16 6 H 0.08 3.65 6.74 -2.91 -0.02 3.64 16 7 C 0.02 0.79 5.46 84.66 0.46 1.26 16 8 N -0.93 -53.51 13.29 21.45 0.28 -53.22 16 9 Si 0.95 41.33 29.54 68.60 2.03 43.35 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 13 S 2.80 112.93 6.11 -56.49 -0.34 112.58 16 14 O -1.01 -40.83 17.09 -128.00 -2.19 -43.02 16 15 O -1.02 -49.40 16.09 -128.00 -2.06 -51.46 16 16 N -1.11 -37.29 6.04 -190.79 -1.15 -38.44 16 17 C 0.17 6.01 6.28 85.63 0.54 6.55 16 18 C -0.16 -4.94 5.28 -19.84 -0.10 -5.04 16 19 C -0.06 -1.62 9.69 22.25 0.22 -1.41 16 20 C -0.20 -4.73 9.31 22.40 0.21 -4.52 16 21 C 0.21 4.76 6.55 38.22 0.25 5.01 16 22 N -0.64 -11.02 3.41 -747.27 -2.55 -13.57 16 23 C 0.09 1.09 9.40 127.77 1.20 2.29 16 24 C 0.09 1.05 10.15 127.77 1.30 2.35 16 25 C -0.20 -4.85 9.20 22.40 0.21 -4.65 16 26 C -0.07 -1.84 9.69 22.25 0.22 -1.62 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 28 H 0.04 1.46 8.11 -2.38 -0.02 1.45 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.77 8.05 -2.39 -0.02 2.76 16 31 H 0.08 2.47 7.64 -2.39 -0.02 2.46 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.02 1.17 6.83 -2.39 -0.02 1.15 16 34 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 35 H 0.42 11.79 8.65 -96.75 -0.84 10.96 16 36 H 0.06 2.34 7.67 -2.39 -0.02 2.32 16 37 H 0.08 3.12 5.53 -2.39 -0.01 3.11 16 38 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.14 2.62 6.73 -2.91 -0.02 2.60 16 40 H 0.05 0.65 7.95 -2.38 -0.02 0.64 16 41 H 0.09 0.67 7.79 -2.39 -0.02 0.65 16 42 H 0.05 0.65 7.95 -2.39 -0.02 0.63 16 43 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.67 7.92 -2.38 -0.02 0.65 16 45 H 0.07 0.84 6.21 -2.39 -0.01 0.82 16 46 H 0.14 2.67 6.15 -2.91 -0.02 2.66 16 47 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -69.16 393.33 -0.91 -70.07 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.14 Total: 29.09 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 6.42 Total: -12.90 kcal Atomic # 7 Polarization: -142.82 SS G_CDS: -4.89 Total: -147.72 kcal Atomic # 8 Polarization: -90.23 SS G_CDS: -4.25 Total: -94.48 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 112.93 SS G_CDS: -0.34 Total: 112.58 kcal Total: -69.16 -0.91 -70.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799999027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.839 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds