Wall clock time and date at job start Wed Apr 1 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46504 * 109.47074 * 2 1 4 4 C 1.46499 * 120.00019 * 275.00176 * 3 2 1 5 5 C 1.50706 * 109.46794 * 291.81004 * 4 3 2 6 6 H 1.07993 * 119.99891 * 359.90467 * 5 4 3 7 7 C 1.37880 * 119.99692 * 179.90328 * 5 4 3 8 8 N 1.31510 * 120.00256 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99494 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47176 * 90.00525 * 9 7 5 11 11 H 1.48502 * 109.47075 * 210.00061 * 9 7 5 12 12 H 1.48498 * 109.47526 * 329.99949 * 9 7 5 13 13 S 1.65604 * 119.99965 * 94.99445 * 3 2 1 14 14 O 1.42098 * 106.40170 * 334.62844 * 13 3 2 15 15 O 1.42100 * 106.40012 * 201.70483 * 13 3 2 16 16 N 1.65599 * 107.21160 * 88.16589 * 13 3 2 17 17 C 1.46498 * 120.00155 * 271.19767 * 16 13 3 18 18 C 1.53005 * 109.47011 * 265.00660 * 17 16 13 19 19 C 1.46499 * 120.00000 * 91.20511 * 16 13 3 20 20 C 1.53002 * 109.47047 * 247.07856 * 19 16 13 21 21 C 1.50698 * 109.47417 * 175.10755 * 20 19 16 22 22 C 1.38225 * 119.61837 * 125.00116 * 21 20 19 23 23 C 1.38628 * 119.16135 * 179.97438 * 22 21 20 24 24 C 1.38666 * 118.42185 * 0.02562 * 23 22 21 25 25 C 1.38185 * 119.16258 * 359.97438 * 24 23 22 26 26 N 1.31854 * 119.61752 * 304.73023 * 21 20 19 27 27 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47163 * 300.00224 * 1 2 3 29 29 H 1.09003 * 109.46740 * 60.00081 * 1 2 3 30 30 H 1.08997 * 109.47163 * 239.99776 * 2 1 3 31 31 H 1.08993 * 109.47183 * 119.99675 * 2 1 3 32 32 H 1.09002 * 109.47458 * 51.80559 * 4 3 2 33 33 H 1.09001 * 109.47127 * 171.81121 * 4 3 2 34 34 H 0.96996 * 120.00101 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.47143 * 25.00015 * 17 16 13 36 36 H 1.08994 * 109.47540 * 145.00607 * 17 16 13 37 37 H 1.09005 * 109.47083 * 299.99365 * 18 17 16 38 38 H 1.08994 * 109.47480 * 59.99874 * 18 17 16 39 39 H 1.08999 * 109.47209 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47437 * 127.08413 * 19 16 13 41 41 H 1.08994 * 109.47166 * 7.07589 * 19 16 13 42 42 H 1.09005 * 109.46793 * 55.11064 * 20 19 16 43 43 H 1.08997 * 109.47263 * 295.11498 * 20 19 16 44 44 H 1.08007 * 120.41926 * 359.95953 * 22 21 20 45 45 H 1.08005 * 120.78864 * 180.02562 * 23 22 21 46 46 H 1.07995 * 120.41773 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.61764 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.2712 1.4967 -2.0752 6 1 3.8203 0.6516 -1.6874 7 6 3.5881 2.0159 -3.3126 8 7 2.9197 3.0454 -3.7846 9 14 4.9680 1.2577 -4.3178 10 1 4.4172 0.1852 -5.1847 11 1 5.5966 2.3039 -5.1637 12 1 5.9871 0.6815 -3.4042 13 16 2.4121 2.1203 1.4287 14 8 1.6539 1.4698 2.4392 15 8 2.3477 3.5193 1.1879 16 7 4.0010 1.7719 1.7391 17 6 4.3531 0.5636 2.4889 18 6 4.5196 0.9126 3.9693 19 6 5.0547 2.6721 1.2639 20 6 5.8826 1.9654 0.1886 21 6 6.8887 2.9295 -0.3852 22 6 8.2306 2.5982 -0.3829 23 6 9.1479 3.4919 -0.9137 24 6 8.6792 4.6910 -1.4287 25 6 7.3228 4.9532 -1.3965 26 7 6.4781 4.0770 -0.8885 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8899 32 1 1.2249 2.0478 -1.8235 33 1 2.3909 3.1535 -1.0579 34 1 3.1429 3.4108 -4.6549 35 1 3.5612 -0.1771 2.3771 36 1 5.2882 0.1567 2.1042 37 1 5.3115 1.6532 4.0812 38 1 3.5845 1.3194 4.3541 39 1 4.7811 0.0135 4.5273 40 1 5.7008 2.9472 2.0974 41 1 4.6027 3.5700 0.8427 42 1 5.2231 1.6135 -0.6048 43 1 6.4039 1.1165 0.6309 44 1 8.5604 1.6551 0.0274 45 1 10.2027 3.2597 -0.9257 46 1 9.3654 5.4104 -1.8503 47 1 6.9497 5.8847 -1.7959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800015650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:10 Heat of formation + Delta-G solvation = -45.733264 kcal Electronic energy + Delta-G solvation = -29885.498486 eV Core-core repulsion = 26002.046950 eV Total energy + Delta-G solvation = -3883.451536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.93160 -36.85367 -36.69692 -35.97142 -35.16055 -33.12026 -32.61790 -32.06375 -30.40759 -29.83646 -27.95968 -26.56007 -24.22281 -23.23864 -23.09128 -22.45958 -21.57396 -20.73242 -18.25616 -17.18219 -16.89137 -16.57723 -16.30245 -16.02987 -15.93440 -15.23592 -14.96581 -14.38110 -14.06448 -13.83641 -13.77001 -13.35333 -13.19981 -13.13592 -12.94331 -12.81046 -12.63494 -12.05231 -11.94821 -11.88709 -11.83490 -11.69750 -11.48586 -11.41041 -11.29229 -11.28774 -11.04852 -10.87990 -10.79159 -10.53264 -10.41688 -10.27825 -9.93745 -9.70665 -9.61337 -9.09053 -8.85004 -8.55377 -8.43986 -7.94976 -6.05563 -4.09746 1.26765 1.36886 1.52319 3.24753 3.31886 3.32717 3.48498 4.07434 4.14144 4.39144 4.60660 4.84719 4.98626 4.99659 5.06909 5.23060 5.28953 5.31943 5.35845 5.41339 5.47650 5.59833 5.64887 5.71884 5.78724 5.84356 5.87472 5.90956 5.92845 5.99080 6.17589 6.20453 6.32430 6.32755 6.35519 6.40649 6.59469 6.68911 6.74447 6.79201 6.96277 7.01719 7.44521 7.51115 7.71902 7.90915 8.23150 8.36993 8.91928 9.54373 11.02958 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.006053 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.718846 B = 4624.787667 C = 6453.210953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.073 3.927 8 N -0.883 5.883 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 S 2.778 3.222 14 O -0.996 6.996 15 O -0.977 6.977 16 N -1.005 6.005 17 C 0.123 3.877 18 C -0.171 4.171 19 C 0.136 3.864 20 C -0.105 4.105 21 C 0.149 3.851 22 C -0.179 4.179 23 C -0.079 4.079 24 C -0.190 4.190 25 C 0.107 3.893 26 N -0.461 5.461 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.071 0.929 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.244 -3.617 8.962 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.125 3.875 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.788 3.212 14 O -0.980 6.980 15 O -0.961 6.961 16 N -0.842 5.842 17 C -0.003 4.003 18 C -0.230 4.230 19 C 0.010 3.990 20 C -0.144 4.144 21 C 0.011 3.989 22 C -0.199 4.199 23 C -0.105 4.105 24 C -0.210 4.210 25 C -0.051 4.051 26 N -0.169 5.169 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.756 -2.757 9.359 12.463 hybrid contribution 2.196 -0.831 -1.171 2.624 sum 9.951 -3.588 8.187 13.377 Atomic orbital electron populations 1.22188 0.97044 1.01249 1.02358 1.20960 0.93635 0.82990 1.01926 1.57783 1.78322 1.23004 1.24137 1.19177 0.97404 0.92258 0.78706 1.21335 1.17513 1.15958 1.02042 0.92056 1.24837 0.96089 0.94709 0.97423 1.69916 1.40358 1.23041 1.18792 0.86740 0.82698 0.78906 0.80507 1.20780 1.21342 1.19906 1.02022 0.72724 0.73498 0.72985 1.93528 1.69027 1.77398 1.58004 1.93576 1.86020 1.30669 1.85821 1.58103 1.25144 1.33232 1.67723 1.21106 1.01831 0.86347 0.91045 1.22205 1.02503 1.01774 0.96551 1.21131 0.89622 0.92893 0.95396 1.21232 0.97138 0.95483 1.00508 1.21250 0.92243 0.92300 0.93132 1.21961 0.94068 1.00880 1.02971 1.21474 0.99734 0.93597 0.95672 1.22077 0.97483 0.98486 1.02977 1.22830 0.89509 0.98123 0.94613 1.67621 1.38852 1.02344 1.08107 0.92500 0.92754 0.92024 0.89868 0.92399 0.95139 0.92782 0.92756 0.90623 0.90733 0.92519 0.92007 0.91932 0.92143 0.87504 0.85750 0.90999 0.85264 0.85428 0.85330 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.13 2.30 5.96 -4.04 -0.02 2.28 16 3 N -0.99 -20.42 2.91 -115.66 -0.34 -20.76 16 4 C 0.25 6.09 5.60 -5.19 -0.03 6.06 16 5 C -0.53 -13.40 7.27 -34.44 -0.25 -13.65 16 6 H 0.06 1.49 6.98 -52.49 -0.37 1.12 16 7 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 8 N -0.88 -25.16 13.29 55.43 0.74 -24.43 16 9 Si 0.88 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 S 2.78 55.97 6.01 -107.50 -0.65 55.32 16 14 O -1.00 -20.24 16.18 -57.17 -0.92 -21.16 16 15 O -0.98 -23.06 15.08 -57.17 -0.86 -23.92 16 16 N -1.00 -16.73 2.93 -114.38 -0.34 -17.07 16 17 C 0.12 1.61 5.96 -4.04 -0.02 1.59 16 18 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 19 C 0.14 2.28 5.76 -4.04 -0.02 2.25 16 20 C -0.10 -1.73 5.62 -27.88 -0.16 -1.89 16 21 C 0.15 2.53 6.17 -82.59 -0.51 2.02 16 22 C -0.18 -2.47 9.71 -39.44 -0.38 -2.85 16 23 C -0.08 -0.97 10.18 -39.28 -0.40 -1.37 16 24 C -0.19 -2.42 10.11 -39.44 -0.40 -2.82 16 25 C 0.11 1.66 11.18 -17.55 -0.20 1.47 16 26 N -0.46 -8.65 9.80 -9.47 -0.09 -8.75 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.06 1.06 8.13 -51.93 -0.42 0.63 16 30 H 0.08 1.47 7.61 -51.93 -0.40 1.07 16 31 H 0.06 0.88 7.13 -51.93 -0.37 0.51 16 32 H 0.03 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.05 1.49 6.78 -51.93 -0.35 1.14 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.08 0.97 7.11 -51.93 -0.37 0.60 16 36 H 0.07 0.83 6.92 -51.93 -0.36 0.47 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 2.14 6.46 -51.93 -0.34 1.80 16 42 H 0.12 2.49 5.61 -51.93 -0.29 2.20 16 43 H 0.07 0.96 6.87 -51.93 -0.36 0.60 16 44 H 0.13 1.44 7.95 -52.48 -0.42 1.02 16 45 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 47 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 393.52 15.07 5.93 5.93 Total: -1.00 -32.36 393.52 -10.68 -43.04 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.40 Total: 5.02 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.73 Total: -9.07 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -0.03 Total: -70.99 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.79 Total: -45.09 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 55.97 SS G_CDS: -0.65 Total: 55.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.36 -10.68 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800015650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.696 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds