Wall clock time and date at job start Wed Apr 1 2020 00:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46504 * 109.47074 * 2 1 4 4 C 1.46499 * 120.00019 * 275.00176 * 3 2 1 5 5 C 1.50706 * 109.46794 * 291.81004 * 4 3 2 6 6 H 1.07993 * 119.99891 * 359.90467 * 5 4 3 7 7 C 1.37880 * 119.99692 * 179.90328 * 5 4 3 8 8 N 1.31510 * 120.00256 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99494 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47176 * 90.00525 * 9 7 5 11 11 H 1.48502 * 109.47075 * 210.00061 * 9 7 5 12 12 H 1.48498 * 109.47526 * 329.99949 * 9 7 5 13 13 S 1.65604 * 119.99965 * 94.99445 * 3 2 1 14 14 O 1.42098 * 106.40170 * 334.62844 * 13 3 2 15 15 O 1.42100 * 106.40012 * 201.70483 * 13 3 2 16 16 N 1.65599 * 107.21160 * 88.16589 * 13 3 2 17 17 C 1.46498 * 120.00155 * 271.19767 * 16 13 3 18 18 C 1.53005 * 109.47011 * 265.00660 * 17 16 13 19 19 C 1.46499 * 120.00000 * 91.20511 * 16 13 3 20 20 C 1.53002 * 109.47047 * 247.07856 * 19 16 13 21 21 C 1.50698 * 109.47417 * 175.10755 * 20 19 16 22 22 C 1.38225 * 119.61837 * 125.00116 * 21 20 19 23 23 C 1.38628 * 119.16135 * 179.97438 * 22 21 20 24 24 C 1.38666 * 118.42185 * 0.02562 * 23 22 21 25 25 C 1.38185 * 119.16258 * 359.97438 * 24 23 22 26 26 N 1.31854 * 119.61752 * 304.73023 * 21 20 19 27 27 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47163 * 300.00224 * 1 2 3 29 29 H 1.09003 * 109.46740 * 60.00081 * 1 2 3 30 30 H 1.08997 * 109.47163 * 239.99776 * 2 1 3 31 31 H 1.08993 * 109.47183 * 119.99675 * 2 1 3 32 32 H 1.09002 * 109.47458 * 51.80559 * 4 3 2 33 33 H 1.09001 * 109.47127 * 171.81121 * 4 3 2 34 34 H 0.96996 * 120.00101 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.47143 * 25.00015 * 17 16 13 36 36 H 1.08994 * 109.47540 * 145.00607 * 17 16 13 37 37 H 1.09005 * 109.47083 * 299.99365 * 18 17 16 38 38 H 1.08994 * 109.47480 * 59.99874 * 18 17 16 39 39 H 1.08999 * 109.47209 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47437 * 127.08413 * 19 16 13 41 41 H 1.08994 * 109.47166 * 7.07589 * 19 16 13 42 42 H 1.09005 * 109.46793 * 55.11064 * 20 19 16 43 43 H 1.08997 * 109.47263 * 295.11498 * 20 19 16 44 44 H 1.08007 * 120.41926 * 359.95953 * 22 21 20 45 45 H 1.08005 * 120.78864 * 180.02562 * 23 22 21 46 46 H 1.07995 * 120.41773 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.61764 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.2712 1.4967 -2.0752 6 1 3.8203 0.6516 -1.6874 7 6 3.5881 2.0159 -3.3126 8 7 2.9197 3.0454 -3.7846 9 14 4.9680 1.2577 -4.3178 10 1 4.4172 0.1852 -5.1847 11 1 5.5966 2.3039 -5.1637 12 1 5.9871 0.6815 -3.4042 13 16 2.4121 2.1203 1.4287 14 8 1.6539 1.4698 2.4392 15 8 2.3477 3.5193 1.1879 16 7 4.0010 1.7719 1.7391 17 6 4.3531 0.5636 2.4889 18 6 4.5196 0.9126 3.9693 19 6 5.0547 2.6721 1.2639 20 6 5.8826 1.9654 0.1886 21 6 6.8887 2.9295 -0.3852 22 6 8.2306 2.5982 -0.3829 23 6 9.1479 3.4919 -0.9137 24 6 8.6792 4.6910 -1.4287 25 6 7.3228 4.9532 -1.3965 26 7 6.4781 4.0770 -0.8885 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8899 32 1 1.2249 2.0478 -1.8235 33 1 2.3909 3.1535 -1.0579 34 1 3.1429 3.4108 -4.6549 35 1 3.5612 -0.1771 2.3771 36 1 5.2882 0.1567 2.1042 37 1 5.3115 1.6532 4.0812 38 1 3.5845 1.3194 4.3541 39 1 4.7811 0.0135 4.5273 40 1 5.7008 2.9472 2.0974 41 1 4.6027 3.5700 0.8427 42 1 5.2231 1.6135 -0.6048 43 1 6.4039 1.1165 0.6309 44 1 8.5604 1.6551 0.0274 45 1 10.2027 3.2597 -0.9257 46 1 9.3654 5.4104 -1.8503 47 1 6.9497 5.8847 -1.7959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800015650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:04 Heat of formation + Delta-G solvation = -67.263658 kcal Electronic energy + Delta-G solvation = -29886.432114 eV Core-core repulsion = 26002.046950 eV Total energy + Delta-G solvation = -3884.385164 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.03060 -38.38957 -38.09989 -37.64919 -36.87229 -34.62576 -34.21241 -33.14902 -31.55834 -31.38951 -29.15924 -28.44565 -25.44625 -24.87766 -24.25742 -23.60590 -23.15194 -21.97748 -19.75239 -18.68548 -18.50173 -18.35690 -17.69892 -17.41416 -17.06418 -16.67198 -16.30811 -16.00969 -15.39067 -15.22979 -15.07294 -14.73318 -14.62954 -14.35568 -14.29695 -14.05692 -13.73581 -13.62663 -13.60995 -13.44233 -13.23571 -13.09651 -13.04074 -12.95823 -12.74677 -12.69007 -12.60126 -12.38599 -12.32100 -12.08193 -11.94246 -11.72917 -11.59457 -11.43541 -10.71388 -10.54516 -10.27366 -10.03166 -9.75405 -9.64047 -8.11977 -6.21202 -0.30952 0.27227 0.50184 1.37071 1.38501 1.46147 1.97848 2.41918 2.56176 2.96628 3.22316 3.37554 3.52314 3.79301 3.88852 4.03154 4.09276 4.24795 4.28351 4.32675 4.37738 4.44269 4.48805 4.51181 4.58507 4.62219 4.69760 4.75459 4.78436 4.88832 5.00357 5.00752 5.09528 5.19924 5.27739 5.31658 5.32568 5.34930 5.39251 5.42850 5.45718 5.55174 5.72291 5.83487 5.92535 6.02814 6.18171 6.87461 7.26787 7.46375 8.97360 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.006053 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.718846 B = 4624.787667 C = 6453.210953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.266 3.734 5 C -0.515 4.515 6 H 0.075 0.925 7 C 0.022 3.978 8 N -0.926 5.926 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.298 1.298 12 H -0.258 1.258 13 S 2.786 3.214 14 O -0.998 6.998 15 O -1.021 7.021 16 N -0.998 5.998 17 C 0.111 3.889 18 C -0.169 4.169 19 C 0.140 3.860 20 C -0.098 4.098 21 C 0.116 3.884 22 C -0.174 4.174 23 C -0.076 4.076 24 C -0.179 4.179 25 C 0.076 3.924 26 N -0.515 5.515 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.006 0.994 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.162 0.838 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.712 -6.438 10.079 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.142 3.858 5 C -0.554 4.554 6 H 0.093 0.907 7 C -0.178 4.178 8 N -0.566 5.566 9 Si 0.769 3.231 10 H -0.199 1.199 11 H -0.224 1.224 12 H -0.182 1.182 13 S 2.796 3.204 14 O -0.982 6.982 15 O -1.005 7.005 16 N -0.838 5.838 17 C -0.013 4.013 18 C -0.228 4.228 19 C 0.015 3.985 20 C -0.137 4.137 21 C -0.022 4.022 22 C -0.193 4.193 23 C -0.101 4.101 24 C -0.199 4.199 25 C -0.081 4.081 26 N -0.225 5.225 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.179 0.821 45 H 0.187 0.813 46 H 0.180 0.820 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.209 -5.617 10.502 16.355 hybrid contribution 1.154 0.065 -1.426 1.836 sum 12.363 -5.552 9.075 16.310 Atomic orbital electron populations 1.22181 0.96266 1.03148 1.01056 1.21250 0.94441 0.81305 1.03293 1.57693 1.79216 1.24129 1.22588 1.18634 0.96151 0.90872 0.80146 1.21553 1.16827 1.15520 1.01543 0.90657 1.25598 0.98279 0.95113 0.98806 1.70066 1.42406 1.24942 1.19205 0.85781 0.80316 0.77904 0.79101 1.19883 1.22430 1.18226 1.01564 0.73645 0.72448 0.72700 1.93513 1.69853 1.77124 1.57680 1.93518 1.86997 1.33677 1.86314 1.57836 1.23499 1.34586 1.67881 1.21512 1.03425 0.84783 0.91583 1.22202 1.01669 1.03312 0.95640 1.21056 0.89420 0.91591 0.96480 1.21137 0.96814 0.96621 0.99102 1.21410 0.93853 0.92189 0.94715 1.22294 0.92729 1.02248 1.02046 1.21995 1.01552 0.92606 0.93985 1.22429 0.96461 0.99446 1.01544 1.23074 0.91059 0.98245 0.95735 1.67498 1.41131 1.03992 1.09856 0.88985 0.93600 0.93778 0.89843 0.89529 0.97594 0.96697 0.93090 0.90186 0.87684 0.91801 0.94237 0.88939 0.89437 0.91771 0.89585 0.87221 0.82099 0.81278 0.82027 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 10.24 71.99 0.74 -4.63 16 2 C 0.12 4.19 5.96 86.38 0.51 4.70 16 3 N -1.00 -42.11 2.91 -519.82 -1.51 -43.63 16 4 C 0.27 13.86 5.60 85.64 0.48 14.34 16 5 C -0.52 -26.73 7.27 25.60 0.19 -26.55 16 6 H 0.08 3.63 6.98 -2.91 -0.02 3.61 16 7 C 0.02 1.18 5.46 84.66 0.46 1.64 16 8 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 9 Si 0.94 43.15 29.54 68.60 2.03 45.18 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 13 S 2.79 115.15 6.01 -56.49 -0.34 114.81 16 14 O -1.00 -40.47 16.18 -128.00 -2.07 -42.54 16 15 O -1.02 -51.44 15.08 -128.00 -1.93 -53.37 16 16 N -1.00 -32.58 2.93 -515.79 -1.51 -34.09 16 17 C 0.11 2.61 5.96 86.38 0.51 3.12 16 18 C -0.17 -3.50 10.24 71.98 0.74 -2.76 16 19 C 0.14 4.72 5.76 86.38 0.50 5.21 16 20 C -0.10 -3.12 5.62 29.85 0.17 -2.95 16 21 C 0.12 3.83 6.17 42.55 0.26 4.09 16 22 C -0.17 -4.19 9.71 22.36 0.22 -3.97 16 23 C -0.08 -1.55 10.18 22.47 0.23 -1.32 16 24 C -0.18 -4.12 10.11 22.36 0.23 -3.90 16 25 C 0.08 2.38 11.18 84.67 0.95 3.33 16 26 N -0.51 -19.92 9.80 -183.89 -1.80 -21.72 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.04 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.08 2.85 7.61 -2.39 -0.02 2.84 16 31 H 0.09 2.46 7.13 -2.39 -0.02 2.44 16 32 H 0.01 0.34 8.13 -2.39 -0.02 0.32 16 33 H 0.02 0.90 6.78 -2.39 -0.02 0.88 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.08 1.82 7.11 -2.38 -0.02 1.80 16 36 H 0.10 1.86 6.92 -2.39 -0.02 1.84 16 37 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.06 2.74 6.46 -2.39 -0.02 2.72 16 42 H 0.09 3.43 5.61 -2.38 -0.01 3.42 16 43 H 0.11 2.52 6.87 -2.39 -0.02 2.51 16 44 H 0.16 2.74 7.95 -2.91 -0.02 2.71 16 45 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 46 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 47 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -75.90 393.52 0.27 -75.63 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.95 Total: 24.35 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 6.18 Total: -9.64 kcal Atomic # 7 Polarization: -149.87 SS G_CDS: -4.54 Total: -154.41 kcal Atomic # 8 Polarization: -91.90 SS G_CDS: -4.00 Total: -95.91 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 115.15 SS G_CDS: -0.34 Total: 114.81 kcal Total: -75.90 0.27 -75.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800015650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.362 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds