Wall clock time and date at job start Wed Apr 1 2020 01:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47283 * 2 1 4 4 C 1.46497 * 119.99589 * 275.00136 * 3 2 1 5 5 C 1.50703 * 109.47162 * 274.99741 * 4 3 2 6 6 H 1.07998 * 119.99859 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99907 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00380 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99723 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47372 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46973 * 120.00162 * 9 7 5 12 12 H 1.48496 * 109.47327 * 240.00043 * 9 7 5 13 13 S 1.65597 * 120.00102 * 94.99692 * 3 2 1 14 14 O 1.42099 * 106.40362 * 336.46534 * 13 3 2 15 15 O 1.42101 * 106.40062 * 203.54221 * 13 3 2 16 16 N 1.65599 * 107.21641 * 90.00447 * 13 3 2 17 17 C 1.46500 * 120.00204 * 64.99944 * 16 13 3 18 18 H 1.09003 * 109.47025 * 334.99682 * 17 16 13 19 19 C 1.50702 * 109.46995 * 215.00180 * 17 16 13 20 20 C 1.38225 * 119.61833 * 4.99594 * 19 17 16 21 21 C 1.38635 * 119.15939 * 180.02562 * 20 19 17 22 22 C 1.38675 * 118.41956 * 0.02562 * 21 20 19 23 23 C 1.38186 * 119.16332 * 0.27967 * 22 21 20 24 24 N 1.31860 * 119.61626 * 185.02272 * 19 17 16 25 25 C 1.53002 * 109.47169 * 94.99870 * 17 16 13 26 26 C 1.53001 * 109.46814 * 64.99984 * 25 17 16 27 27 C 1.53002 * 109.46867 * 184.99922 * 25 17 16 28 28 H 1.09003 * 109.46996 * 300.00116 * 1 2 3 29 29 H 1.09001 * 109.47277 * 60.00202 * 1 2 3 30 30 H 1.08996 * 109.47411 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47360 * 239.99829 * 2 1 3 32 32 H 1.09001 * 109.47277 * 119.99798 * 2 1 3 33 33 H 1.09001 * 109.47724 * 35.00101 * 4 3 2 34 34 H 1.09006 * 109.47251 * 154.99938 * 4 3 2 35 35 H 0.96999 * 120.00235 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99955 * 245.00023 * 16 13 3 37 37 H 1.07997 * 120.42054 * 0.04702 * 20 19 17 38 38 H 1.07998 * 120.78847 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.41399 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.61418 * 179.70216 * 23 22 21 41 41 H 1.08997 * 109.46880 * 305.00191 * 25 17 16 42 42 H 1.09007 * 109.47251 * 60.00424 * 26 25 17 43 43 H 1.09004 * 109.46994 * 179.97438 * 26 25 17 44 44 H 1.08992 * 109.47152 * 299.99890 * 26 25 17 45 45 H 1.08997 * 109.47068 * 299.99904 * 27 25 17 46 46 H 1.09001 * 109.46727 * 60.00068 * 27 25 17 47 47 H 1.09001 * 109.46444 * 180.02562 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4947 1.7887 -1.8824 6 1 4.1723 1.1117 -1.3836 7 6 3.8528 2.3612 -3.0845 8 7 3.0283 3.1869 -3.6911 9 14 5.5098 1.9653 -3.8506 10 1 6.2457 1.0172 -2.9760 11 1 5.3031 1.3481 -5.1854 12 1 6.2976 3.2152 -3.9999 13 16 2.4121 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1997 16 7 4.0143 1.8138 1.7137 17 6 5.0350 2.3525 0.8113 18 1 4.5968 2.5238 -0.1719 19 6 6.1694 1.3677 0.6910 20 6 6.0696 0.1325 1.3034 21 6 7.1190 -0.7659 1.1870 22 6 8.2347 -0.3864 0.4561 23 6 8.2658 0.8679 -0.1229 24 7 7.2458 1.6945 0.0031 25 6 5.5643 3.6744 1.3712 26 6 6.2893 3.4143 2.6932 27 6 6.5380 4.2988 0.3698 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3617 1.8097 -1.9453 34 1 2.0921 3.1803 -1.0757 35 1 3.2801 3.5893 -4.5370 36 1 4.2771 1.2775 2.4781 37 1 5.1853 -0.1294 1.8652 38 1 7.0688 -1.7382 1.6545 39 1 9.0709 -1.0608 0.3450 40 1 9.1331 1.1728 -0.6896 41 1 4.7313 4.3562 1.5417 42 1 7.1225 2.7324 2.5228 43 1 6.6668 4.3560 3.0919 44 1 5.5957 2.9694 3.4066 45 1 7.3711 3.6169 0.1994 46 1 6.0215 4.4840 -0.5720 47 1 6.9154 5.2403 0.7689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800056950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:46 Heat of formation + Delta-G solvation = -40.205749 kcal Electronic energy + Delta-G solvation = -30634.084170 eV Core-core repulsion = 26750.872325 eV Total energy + Delta-G solvation = -3883.211845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.34060 -37.07074 -36.51602 -36.03327 -35.20323 -33.07423 -32.76869 -31.95069 -30.62158 -29.97191 -26.84691 -26.63842 -25.68962 -23.29862 -23.15893 -22.29357 -21.74491 -19.68838 -18.81672 -17.60353 -16.96309 -16.81079 -16.30385 -15.83155 -15.56557 -15.18985 -14.90932 -14.87145 -14.27262 -13.87303 -13.81533 -13.34637 -13.25908 -13.08358 -12.87609 -12.79687 -12.11357 -12.03751 -11.85992 -11.75602 -11.64400 -11.56560 -11.46251 -11.35553 -11.30588 -11.08403 -11.02867 -10.91549 -10.53340 -10.49780 -10.42571 -10.35356 -10.04897 -9.76235 -9.70696 -9.25747 -8.84225 -8.62059 -8.52047 -8.09729 -6.16038 -4.22941 1.27011 1.30232 1.45181 3.25501 3.34984 3.38633 3.48446 3.98546 4.14036 4.35512 4.47419 4.85025 4.94641 5.04125 5.15340 5.21147 5.24769 5.36729 5.39381 5.49045 5.51011 5.64796 5.73788 5.77028 5.83418 5.91859 6.00709 6.09984 6.14978 6.23942 6.27831 6.31280 6.32246 6.40773 6.49636 6.62946 6.66127 6.68328 6.75460 6.87712 7.17529 7.24904 7.34802 7.44050 7.64005 7.80953 8.09292 8.21923 8.81699 9.43683 10.90810 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.007061 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.448708 B = 3964.590228 C = 5151.610435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.992 5.992 4 C 0.241 3.759 5 C -0.546 4.546 6 H 0.066 0.934 7 C 0.073 3.927 8 N -0.881 5.881 9 Si 0.887 3.113 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.279 1.279 13 S 2.784 3.216 14 O -1.000 7.000 15 O -0.974 6.974 16 N -1.125 6.125 17 C 0.183 3.817 18 H 0.158 0.842 19 C 0.157 3.843 20 C -0.173 4.173 21 C -0.073 4.073 22 C -0.189 4.189 23 C 0.101 3.899 24 N -0.465 5.465 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.159 4.159 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.265 0.735 36 H 0.404 0.596 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.152 0.848 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 -6.671 9.338 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.119 3.881 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.132 4.132 8 N -0.518 5.518 9 Si 0.715 3.285 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.205 1.205 13 S 2.792 3.208 14 O -0.984 6.984 15 O -0.957 6.957 16 N -0.883 5.883 17 C 0.076 3.924 18 H 0.174 0.826 19 C 0.018 3.982 20 C -0.193 4.193 21 C -0.099 4.099 22 C -0.209 4.209 23 C -0.056 4.056 24 N -0.174 5.174 25 C -0.120 4.120 26 C -0.200 4.200 27 C -0.216 4.216 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.586 -5.105 9.169 12.390 hybrid contribution 1.313 -1.692 -0.142 2.147 sum 7.899 -6.797 9.027 13.787 Atomic orbital electron populations 1.22205 0.96927 1.01371 1.02415 1.20959 0.93647 0.82850 1.02064 1.57716 1.78515 1.22965 1.24153 1.19259 0.97373 0.92372 0.79087 1.21561 1.02241 1.28356 1.06331 0.91592 1.24907 0.97042 0.94515 0.96706 1.69938 1.35832 1.29191 1.16887 0.86586 0.84168 0.78803 0.78992 1.19198 1.21362 1.20479 1.01823 0.72433 0.73870 0.72644 1.93547 1.70324 1.76338 1.58224 1.93588 1.85723 1.30830 1.85589 1.56250 1.25617 1.68534 1.37862 1.20295 0.85872 0.89596 0.96616 0.82564 1.21269 0.93002 0.92974 0.90929 1.21862 0.99900 0.95018 1.02504 1.21496 0.92992 0.99064 0.96369 1.22021 0.99584 0.98404 1.00851 1.22760 0.96579 0.90254 0.96034 1.67444 1.00337 1.34498 1.15161 1.21469 0.99259 0.95933 0.95349 1.21821 0.99814 1.01014 0.97305 1.22104 1.00822 1.00032 0.98677 0.92661 0.92029 0.92387 0.90229 0.92006 0.94238 0.92951 0.92539 0.76263 0.84949 0.85287 0.85380 0.83115 0.89632 0.93345 0.93011 0.93163 0.89087 0.92166 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.15 0.38 -2.26 16 2 C 0.13 2.22 6.06 -4.04 -0.02 2.19 16 3 N -0.99 -19.67 2.82 -115.66 -0.33 -20.00 16 4 C 0.24 5.72 5.31 -5.19 -0.03 5.70 16 5 C -0.55 -13.55 6.91 -34.44 -0.24 -13.79 16 6 H 0.07 1.60 6.91 -52.49 -0.36 1.24 16 7 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 8 N -0.88 -24.41 13.29 55.43 0.74 -23.67 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 S 2.78 53.75 6.01 -107.50 -0.65 53.11 16 14 O -1.00 -19.77 17.11 -57.17 -0.98 -20.75 16 15 O -0.97 -21.97 15.90 -57.17 -0.91 -22.88 16 16 N -1.13 -18.33 4.41 -5.88 -0.03 -18.36 16 17 C 0.18 3.27 2.21 -69.08 -0.15 3.12 16 18 H 0.16 3.35 4.25 -51.93 -0.22 3.13 16 19 C 0.16 2.58 4.64 -82.58 -0.38 2.20 16 20 C -0.17 -2.41 9.19 -39.44 -0.36 -2.77 16 21 C -0.07 -0.87 10.18 -39.27 -0.40 -1.27 16 22 C -0.19 -2.22 10.11 -39.44 -0.40 -2.62 16 23 C 0.10 1.39 11.18 -17.55 -0.20 1.19 16 24 N -0.47 -7.74 7.02 -9.47 -0.07 -7.80 16 25 C -0.10 -1.68 2.90 -90.62 -0.26 -1.94 16 26 C -0.14 -2.00 8.76 37.16 0.33 -1.67 16 27 C -0.16 -2.67 8.81 37.16 0.33 -2.35 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 32 H 0.06 0.92 7.61 -51.93 -0.40 0.53 16 33 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 34 H 0.05 1.38 6.92 -51.93 -0.36 1.02 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.40 5.38 6.86 -34.47 -0.24 5.14 16 37 H 0.13 1.62 6.14 -52.49 -0.32 1.30 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.09 1.56 7.59 -51.93 -0.39 1.17 16 42 H 0.05 0.67 7.07 -51.93 -0.37 0.31 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.66 7.63 -51.93 -0.40 0.26 16 45 H 0.09 1.51 5.18 -51.93 -0.27 1.24 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -30.87 383.09 -10.08 -40.95 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.11 Total: 10.43 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.51 Total: -12.46 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: 0.32 Total: -69.83 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -1.89 Total: -43.62 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.65 Total: 53.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.87 -10.08 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800056950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.741 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds