Wall clock time and date at job start Wed Apr 1 2020 01:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47283 * 2 1 4 4 C 1.46497 * 119.99589 * 275.00136 * 3 2 1 5 5 C 1.50703 * 109.47162 * 274.99741 * 4 3 2 6 6 H 1.07998 * 119.99859 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99907 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00380 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99723 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47372 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46973 * 120.00162 * 9 7 5 12 12 H 1.48496 * 109.47327 * 240.00043 * 9 7 5 13 13 S 1.65597 * 120.00102 * 94.99692 * 3 2 1 14 14 O 1.42099 * 106.40362 * 336.46534 * 13 3 2 15 15 O 1.42101 * 106.40062 * 203.54221 * 13 3 2 16 16 N 1.65599 * 107.21641 * 90.00447 * 13 3 2 17 17 C 1.46500 * 120.00204 * 64.99944 * 16 13 3 18 18 H 1.09003 * 109.47025 * 334.99682 * 17 16 13 19 19 C 1.50702 * 109.46995 * 215.00180 * 17 16 13 20 20 C 1.38225 * 119.61833 * 4.99594 * 19 17 16 21 21 C 1.38635 * 119.15939 * 180.02562 * 20 19 17 22 22 C 1.38675 * 118.41956 * 0.02562 * 21 20 19 23 23 C 1.38186 * 119.16332 * 0.27967 * 22 21 20 24 24 N 1.31860 * 119.61626 * 185.02272 * 19 17 16 25 25 C 1.53002 * 109.47169 * 94.99870 * 17 16 13 26 26 C 1.53001 * 109.46814 * 64.99984 * 25 17 16 27 27 C 1.53002 * 109.46867 * 184.99922 * 25 17 16 28 28 H 1.09003 * 109.46996 * 300.00116 * 1 2 3 29 29 H 1.09001 * 109.47277 * 60.00202 * 1 2 3 30 30 H 1.08996 * 109.47411 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47360 * 239.99829 * 2 1 3 32 32 H 1.09001 * 109.47277 * 119.99798 * 2 1 3 33 33 H 1.09001 * 109.47724 * 35.00101 * 4 3 2 34 34 H 1.09006 * 109.47251 * 154.99938 * 4 3 2 35 35 H 0.96999 * 120.00235 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99955 * 245.00023 * 16 13 3 37 37 H 1.07997 * 120.42054 * 0.04702 * 20 19 17 38 38 H 1.07998 * 120.78847 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.41399 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.61418 * 179.70216 * 23 22 21 41 41 H 1.08997 * 109.46880 * 305.00191 * 25 17 16 42 42 H 1.09007 * 109.47251 * 60.00424 * 26 25 17 43 43 H 1.09004 * 109.46994 * 179.97438 * 26 25 17 44 44 H 1.08992 * 109.47152 * 299.99890 * 26 25 17 45 45 H 1.08997 * 109.47068 * 299.99904 * 27 25 17 46 46 H 1.09001 * 109.46727 * 60.00068 * 27 25 17 47 47 H 1.09001 * 109.46444 * 180.02562 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4947 1.7887 -1.8824 6 1 4.1723 1.1117 -1.3836 7 6 3.8528 2.3612 -3.0845 8 7 3.0283 3.1869 -3.6911 9 14 5.5098 1.9653 -3.8506 10 1 6.2457 1.0172 -2.9760 11 1 5.3031 1.3481 -5.1854 12 1 6.2976 3.2152 -3.9999 13 16 2.4121 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1997 16 7 4.0143 1.8138 1.7137 17 6 5.0350 2.3525 0.8113 18 1 4.5968 2.5238 -0.1719 19 6 6.1694 1.3677 0.6910 20 6 6.0696 0.1325 1.3034 21 6 7.1190 -0.7659 1.1870 22 6 8.2347 -0.3864 0.4561 23 6 8.2658 0.8679 -0.1229 24 7 7.2458 1.6945 0.0031 25 6 5.5643 3.6744 1.3712 26 6 6.2893 3.4143 2.6932 27 6 6.5380 4.2988 0.3698 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3617 1.8097 -1.9453 34 1 2.0921 3.1803 -1.0757 35 1 3.2801 3.5893 -4.5370 36 1 4.2771 1.2775 2.4781 37 1 5.1853 -0.1294 1.8652 38 1 7.0688 -1.7382 1.6545 39 1 9.0709 -1.0608 0.3450 40 1 9.1331 1.1728 -0.6896 41 1 4.7313 4.3562 1.5417 42 1 7.1225 2.7324 2.5228 43 1 6.6668 4.3560 3.0919 44 1 5.5957 2.9694 3.4066 45 1 7.3711 3.6169 0.1994 46 1 6.0215 4.4840 -0.5720 47 1 6.9154 5.2403 0.7689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800056950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:45 Heat of formation + Delta-G solvation = -60.513552 kcal Electronic energy + Delta-G solvation = -30634.964782 eV Core-core repulsion = 26750.872325 eV Total energy + Delta-G solvation = -3884.092458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43026 -38.48812 -38.00737 -37.63773 -36.87535 -34.70820 -34.32393 -33.03155 -31.70383 -31.53530 -28.54799 -27.97530 -26.98448 -24.93428 -24.30380 -23.41855 -23.29077 -20.98355 -20.33476 -19.04664 -18.56680 -18.42091 -17.88076 -17.10037 -16.84152 -16.57618 -16.36675 -15.99880 -15.87692 -15.34762 -15.11557 -14.79828 -14.63652 -14.33696 -14.24131 -13.88601 -13.80279 -13.63292 -13.38017 -13.19299 -13.08085 -13.02441 -12.93194 -12.77375 -12.75390 -12.68682 -12.53957 -12.41117 -12.23996 -12.07811 -11.80882 -11.72871 -11.64139 -11.52645 -10.76238 -10.57662 -10.55188 -9.94395 -9.79729 -9.72567 -8.18034 -6.28308 -0.30126 0.27749 0.47988 1.37128 1.43502 1.52319 1.95321 2.41188 2.59841 2.94768 3.14247 3.32164 3.49219 3.80482 3.98681 4.00036 4.12662 4.19882 4.23655 4.30533 4.36576 4.43593 4.45434 4.53903 4.71447 4.75132 4.82063 4.88781 4.92035 4.99773 5.01781 5.06886 5.16504 5.17976 5.23295 5.28949 5.34803 5.35367 5.42356 5.52023 5.54862 5.66376 5.76725 5.89431 5.97734 6.09586 6.17033 6.82220 7.17336 7.40364 8.89655 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008911 B = 0.007061 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.448708 B = 3964.590228 C = 5151.610435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.531 4.531 6 H 0.073 0.927 7 C 0.025 3.975 8 N -0.920 5.920 9 Si 0.943 3.057 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.285 1.285 13 S 2.799 3.201 14 O -1.001 7.001 15 O -1.011 7.011 16 N -1.108 6.108 17 C 0.186 3.814 18 H 0.117 0.883 19 C 0.132 3.868 20 C -0.180 4.180 21 C -0.070 4.070 22 C -0.176 4.176 23 C 0.082 3.918 24 N -0.497 5.497 25 C -0.103 4.103 26 C -0.132 4.132 27 C -0.154 4.154 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.024 0.976 34 H 0.019 0.981 35 H 0.264 0.736 36 H 0.420 0.580 37 H 0.145 0.855 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.027 0.973 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.342 -9.624 10.911 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.836 5.836 4 C 0.134 3.866 5 C -0.570 4.570 6 H 0.091 0.909 7 C -0.176 4.176 8 N -0.560 5.560 9 Si 0.769 3.231 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.211 1.211 13 S 2.807 3.193 14 O -0.985 6.985 15 O -0.995 6.995 16 N -0.869 5.869 17 C 0.078 3.922 18 H 0.135 0.865 19 C -0.006 4.006 20 C -0.200 4.200 21 C -0.096 4.096 22 C -0.196 4.196 23 C -0.075 4.075 24 N -0.208 5.208 25 C -0.124 4.124 26 C -0.190 4.190 27 C -0.212 4.212 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.257 0.743 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.182 0.818 40 H 0.188 0.812 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.046 0.954 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.685 -8.093 10.774 16.032 hybrid contribution 0.698 -0.832 -0.566 1.225 sum 9.383 -8.926 10.208 16.490 Atomic orbital electron populations 1.22196 0.95920 1.03256 1.01345 1.21257 0.94621 0.81173 1.03333 1.57614 1.79169 1.24139 1.22679 1.18777 0.96559 0.90916 0.80320 1.21740 1.02307 1.27234 1.05669 0.90935 1.25583 0.99729 0.94721 0.97560 1.70045 1.37579 1.30870 1.17484 0.85711 0.80864 0.78312 0.78202 1.18354 1.21175 1.21111 1.01232 0.72906 0.72947 0.72259 1.93537 1.70887 1.76106 1.57986 1.93545 1.86509 1.33405 1.86029 1.55807 1.24204 1.68590 1.38315 1.19992 0.86487 0.90900 0.94793 0.86541 1.21003 0.92851 0.93698 0.93062 1.22052 1.01191 0.94393 1.02351 1.21937 0.92013 0.99948 0.95678 1.22431 1.00409 0.97836 0.98897 1.23232 0.96463 0.91073 0.96686 1.67299 1.01209 1.36215 1.16033 1.21451 0.98721 0.95222 0.96960 1.21725 0.99776 1.01864 0.95585 1.22067 1.00713 1.01081 0.97301 0.93432 0.93391 0.89032 0.90174 0.89424 0.95823 0.96311 0.92671 0.74275 0.83728 0.81745 0.81823 0.81198 0.92042 0.92841 0.91818 0.92220 0.88408 0.95419 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 10.24 71.98 0.74 -4.28 16 2 C 0.12 3.95 6.06 86.38 0.52 4.47 16 3 N -0.99 -39.88 2.82 -519.85 -1.47 -41.34 16 4 C 0.26 12.75 5.31 85.63 0.45 13.21 16 5 C -0.53 -26.95 6.91 25.60 0.18 -26.78 16 6 H 0.07 3.54 6.91 -2.91 -0.02 3.52 16 7 C 0.02 1.32 5.46 84.66 0.46 1.79 16 8 N -0.92 -52.95 13.29 21.45 0.28 -52.67 16 9 Si 0.94 43.27 29.54 68.60 2.03 45.29 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 S 2.80 108.74 6.01 -56.49 -0.34 108.40 16 14 O -1.00 -38.48 17.11 -128.00 -2.19 -40.67 16 15 O -1.01 -47.57 15.90 -128.00 -2.04 -49.60 16 16 N -1.11 -35.40 4.41 -172.51 -0.76 -36.16 16 17 C 0.19 6.65 2.21 44.25 0.10 6.75 16 18 H 0.12 5.16 4.25 -2.39 -0.01 5.15 16 19 C 0.13 4.16 4.64 42.55 0.20 4.35 16 20 C -0.18 -4.49 9.19 22.36 0.21 -4.28 16 21 C -0.07 -1.36 10.18 22.47 0.23 -1.13 16 22 C -0.18 -3.37 10.11 22.36 0.23 -3.14 16 23 C 0.08 2.03 11.18 84.67 0.95 2.98 16 24 N -0.50 -15.84 7.02 -183.88 -1.29 -17.13 16 25 C -0.10 -3.52 2.90 -10.79 -0.03 -3.55 16 26 C -0.13 -3.54 8.76 71.98 0.63 -2.90 16 27 C -0.15 -5.32 8.81 71.98 0.63 -4.68 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 32 H 0.09 2.40 7.61 -2.39 -0.02 2.38 16 33 H 0.02 1.23 8.11 -2.39 -0.02 1.21 16 34 H 0.02 1.06 6.92 -2.38 -0.02 1.04 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.42 10.44 6.86 -96.74 -0.66 9.77 16 37 H 0.15 3.08 6.14 -2.91 -0.02 3.06 16 38 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 41 H 0.06 2.35 7.59 -2.39 -0.02 2.34 16 42 H 0.05 1.38 7.07 -2.38 -0.02 1.37 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.45 7.63 -2.39 -0.02 1.44 16 45 H 0.10 3.26 5.18 -2.39 -0.01 3.25 16 46 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -69.25 383.09 0.03 -69.22 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.31 Total: 31.88 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 5.49 Total: -17.21 kcal Atomic # 7 Polarization: -144.07 SS G_CDS: -3.24 Total: -147.31 kcal Atomic # 8 Polarization: -86.05 SS G_CDS: -4.23 Total: -90.28 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 108.74 SS G_CDS: -0.34 Total: 108.40 kcal Total: -69.25 0.03 -69.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800056950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.707 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds