Wall clock time and date at job start Wed Apr 1 2020 00:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46833 * 2 1 4 4 C 1.46504 * 120.00265 * 85.00234 * 3 2 1 5 5 C 1.53000 * 109.46739 * 275.00177 * 4 3 2 6 6 C 1.50707 * 109.46899 * 180.02562 * 5 4 3 7 7 C 1.38227 * 119.62059 * 125.01804 * 6 5 4 8 8 C 1.38627 * 119.15702 * 179.74122 * 7 6 5 9 9 C 1.38669 * 118.42389 * 0.47826 * 8 7 6 10 10 C 1.38186 * 119.16143 * 359.49762 * 9 8 7 11 11 N 1.31856 * 119.61137 * 304.99234 * 6 5 4 12 12 S 1.65599 * 119.99957 * 264.99647 * 3 2 1 13 13 O 1.42102 * 106.40105 * 23.54192 * 12 3 2 14 14 O 1.42099 * 106.40157 * 156.45978 * 12 3 2 15 15 N 1.65600 * 107.21920 * 270.00310 * 12 3 2 16 16 C 1.46494 * 119.99928 * 90.00033 * 15 12 3 17 17 C 1.46502 * 120.00030 * 269.99959 * 15 12 3 18 18 H 1.09004 * 109.47081 * 359.97438 * 17 15 12 19 19 C 1.52998 * 109.46993 * 240.00125 * 17 15 12 20 20 C 1.50694 * 109.47237 * 119.99961 * 17 15 12 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 17 15 22 22 C 1.37880 * 120.00391 * 179.97438 * 20 17 15 23 23 N 1.31512 * 119.99572 * 359.97438 * 22 20 17 24 24 Si 1.86792 * 120.00297 * 179.97438 * 22 20 17 25 25 H 1.48503 * 109.46952 * 60.00488 * 24 22 20 26 26 H 1.48501 * 109.47198 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47384 * 300.00242 * 24 22 20 28 28 H 1.09006 * 109.47703 * 300.00135 * 1 2 3 29 29 H 1.08997 * 109.47279 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47557 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47323 * 240.00168 * 2 1 3 32 32 H 1.09003 * 109.47243 * 119.99715 * 2 1 3 33 33 H 1.08995 * 109.47107 * 154.99645 * 4 3 2 34 34 H 1.09000 * 109.46804 * 34.99124 * 4 3 2 35 35 H 1.08995 * 109.47755 * 59.99866 * 5 4 3 36 36 H 1.08999 * 109.47059 * 299.99355 * 5 4 3 37 37 H 1.07998 * 120.41916 * 359.95342 * 7 6 5 38 38 H 1.08008 * 120.78688 * 180.22921 * 8 7 6 39 39 H 1.08002 * 120.42244 * 179.78279 * 9 8 7 40 40 H 1.07996 * 119.61757 * 180.25243 * 10 9 8 41 41 H 1.09004 * 109.47320 * 90.00165 * 16 15 12 42 42 H 1.08999 * 109.47477 * 209.99988 * 16 15 12 43 43 H 1.09004 * 109.47607 * 329.99902 * 16 15 12 44 44 H 1.09002 * 109.46996 * 179.97438 * 19 17 15 45 45 H 1.08998 * 109.47374 * 300.00066 * 19 17 15 46 46 H 1.08998 * 109.46990 * 60.00001 * 19 17 15 47 47 H 0.97001 * 120.00195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 1.2639 5 6 0.8157 2.7383 1.6413 6 6 0.9598 3.4872 2.9411 7 6 0.6025 4.8210 3.0043 8 6 0.7339 5.4992 4.2062 9 6 1.2313 4.8101 5.3019 10 6 1.5673 3.4769 5.1632 11 7 1.4247 2.8623 4.0050 12 16 2.4121 2.1202 -1.4287 13 8 1.6868 1.4415 -2.4448 14 8 2.3055 3.5186 -1.1998 15 7 4.0144 1.8137 -1.7137 16 6 4.4089 0.6239 -2.4717 17 6 5.0372 2.7325 -1.2078 18 1 4.5569 3.5524 -0.6736 19 6 5.8448 3.2923 -2.3806 20 6 5.9578 1.9932 -0.2715 21 1 5.7973 0.9437 -0.0733 22 6 7.0056 2.6562 0.3315 23 7 7.2019 3.9337 0.0891 24 14 8.1462 1.7398 1.4927 25 1 8.8000 0.6225 0.7651 26 1 9.1838 2.6708 2.0045 27 1 7.3622 1.1975 2.6312 28 1 -0.3635 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9079 2.8919 1.1513 34 1 2.4688 1.4183 2.0480 35 1 0.0660 1.9552 1.7539 36 1 0.5050 3.4287 0.8572 37 1 0.2226 5.3274 2.1293 38 1 0.4592 6.5407 4.2862 39 1 1.3504 5.3078 6.2530 40 1 1.9515 2.9321 6.0128 41 1 4.4546 0.8678 -3.5331 42 1 5.3888 0.2863 -2.1340 43 1 3.6771 -0.1680 -2.3120 44 1 6.6055 3.9763 -2.0042 45 1 6.3249 2.4728 -2.9152 46 1 5.1789 3.8271 -3.0578 47 1 7.9388 4.4003 0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800902038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:23 Heat of formation + Delta-G solvation = -40.873058 kcal Electronic energy + Delta-G solvation = -29381.067216 eV Core-core repulsion = 25497.826434 eV Total energy + Delta-G solvation = -3883.240782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.15489 -36.92505 -36.73649 -36.11383 -35.20064 -33.23292 -32.58840 -32.27174 -30.45749 -29.07824 -28.26149 -25.48336 -25.16872 -24.06677 -23.39798 -22.36794 -21.30149 -20.68838 -18.39497 -17.25540 -16.87719 -16.76216 -16.41148 -16.18670 -15.70043 -15.39904 -14.89703 -14.46287 -14.21816 -13.82244 -13.70213 -13.44480 -13.24052 -13.17151 -12.85365 -12.81671 -12.68233 -12.27785 -12.01207 -11.85953 -11.77068 -11.66483 -11.49183 -11.40747 -11.35897 -11.19812 -10.96934 -10.86337 -10.66663 -10.47527 -10.41148 -10.20328 -10.05336 -9.83789 -9.43549 -9.29507 -9.02808 -8.64936 -8.47466 -7.93165 -6.08970 -4.17333 1.11720 1.26281 1.31324 3.26298 3.31679 3.32925 3.46433 3.82513 4.10775 4.34896 4.36270 4.70885 4.84412 4.94597 5.01004 5.09043 5.14621 5.21576 5.36564 5.38281 5.42363 5.51907 5.54825 5.59892 5.72160 5.80394 5.86115 5.93656 6.07129 6.18509 6.18851 6.23083 6.31068 6.34343 6.42070 6.50331 6.66816 6.74134 6.85172 6.88877 6.98547 7.12737 7.51086 7.63095 7.78333 8.04402 8.05505 8.26600 8.85618 9.49015 10.95940 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008401 B = 0.005312 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.197879 B = 5269.723697 C = 7207.991850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.125 3.875 3 N -1.004 6.004 4 C 0.140 3.860 5 C -0.094 4.094 6 C 0.140 3.860 7 C -0.166 4.166 8 C -0.074 4.074 9 C -0.183 4.183 10 C 0.102 3.898 11 N -0.480 5.480 12 S 2.777 3.223 13 O -0.996 6.996 14 O -0.979 6.979 15 N -0.992 5.992 16 C 0.107 3.893 17 C 0.268 3.732 18 H 0.057 0.943 19 C -0.145 4.145 20 C -0.525 4.525 21 H 0.062 0.938 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.042 0.958 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.032 0.968 46 H 0.011 0.989 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.213 -2.733 6.189 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.001 4.001 3 N -0.841 5.841 4 C 0.014 3.986 5 C -0.133 4.133 6 C 0.002 3.998 7 C -0.186 4.186 8 C -0.100 4.100 9 C -0.203 4.203 10 C -0.056 4.056 11 N -0.189 5.189 12 S 2.787 3.213 13 O -0.980 6.980 14 O -0.963 6.963 15 N -0.834 5.834 16 C -0.039 4.039 17 C 0.165 3.835 18 H 0.075 0.925 19 C -0.204 4.204 20 C -0.564 4.564 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.436 -2.965 5.605 13.959 hybrid contribution 0.815 0.303 1.083 1.388 sum -11.621 -2.662 6.688 13.670 Atomic orbital electron populations 1.22347 0.96519 1.02005 1.02513 1.21138 0.94069 0.82071 1.02856 1.58105 1.79958 1.23044 1.23038 1.21082 0.95496 0.96397 0.85609 1.21201 1.00186 0.99846 0.92088 1.21183 0.93091 0.91425 0.94074 1.22059 1.02098 0.95452 0.98992 1.21570 0.95766 1.00080 0.92595 1.22096 1.01964 0.96366 0.99907 1.22729 0.95526 0.92210 0.95105 1.67476 1.12685 1.39585 0.99167 1.02039 0.73194 0.73277 0.72755 1.93529 1.71858 1.76365 1.56246 1.93568 1.86524 1.30490 1.85720 1.57789 1.24504 1.34331 1.66751 1.21180 1.01715 0.86154 0.94869 1.18712 0.85334 0.87484 0.91943 0.92538 1.22054 1.00764 1.00400 0.97206 1.21333 1.12180 0.96764 1.26150 0.91957 1.24910 0.97378 0.94871 0.96582 1.69869 1.30922 1.08523 1.43209 0.86614 0.80406 0.79524 0.81185 1.20268 1.21283 1.20188 0.92101 0.92086 0.91905 0.90628 0.90565 0.89402 0.89508 0.89398 0.89765 0.84617 0.84979 0.85077 0.82908 0.93954 0.90215 0.93340 0.88919 0.94876 0.96958 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 10.02 37.16 0.37 -1.71 16 2 C 0.12 1.69 6.09 -4.04 -0.02 1.67 16 3 N -1.00 -16.70 2.87 -114.38 -0.33 -17.03 16 4 C 0.14 2.33 5.23 -4.04 -0.02 2.31 16 5 C -0.09 -1.35 5.72 -27.88 -0.16 -1.51 16 6 C 0.14 2.04 6.18 -82.58 -0.51 1.53 16 7 C -0.17 -2.14 9.71 -39.44 -0.38 -2.52 16 8 C -0.07 -0.82 10.18 -39.28 -0.40 -1.22 16 9 C -0.18 -1.95 10.11 -39.44 -0.40 -2.35 16 10 C 0.10 1.23 11.18 -17.55 -0.20 1.04 16 11 N -0.48 -7.04 9.88 -9.47 -0.09 -7.13 16 12 S 2.78 55.49 5.96 -107.50 -0.64 54.85 16 13 O -1.00 -20.39 16.18 -57.17 -0.93 -21.32 16 14 O -0.98 -22.12 15.67 -57.17 -0.90 -23.02 16 15 N -0.99 -20.90 3.12 -115.86 -0.36 -21.26 16 16 C 0.11 1.95 9.28 59.84 0.56 2.50 16 17 C 0.27 6.58 2.62 -69.08 -0.18 6.40 16 18 H 0.06 1.53 6.91 -51.93 -0.36 1.18 16 19 C -0.14 -3.48 8.97 37.16 0.33 -3.15 16 20 C -0.52 -13.44 7.99 -34.44 -0.28 -13.72 16 21 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 22 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 24 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H 0.06 0.68 5.68 -51.93 -0.29 0.38 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.01 7.26 -51.93 -0.38 0.63 16 32 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 33 H 0.09 1.71 7.61 -51.93 -0.40 1.32 16 34 H 0.09 1.39 7.81 -51.93 -0.41 0.99 16 35 H 0.09 1.12 5.68 -51.93 -0.29 0.82 16 36 H 0.08 1.23 7.87 -51.93 -0.41 0.82 16 37 H 0.14 1.55 7.95 -52.49 -0.42 1.13 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 43 H 0.05 0.76 7.44 -51.93 -0.39 0.37 16 44 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 45 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 46 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -31.45 389.78 -10.46 -41.91 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.31 Total: 4.48 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.38 Total: -9.10 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -0.16 Total: -69.15 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.82 Total: -44.33 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 55.49 SS G_CDS: -0.64 Total: 54.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.45 -10.46 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.034 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds