Wall clock time and date at job start Wed Apr 1 2020 00:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46833 * 2 1 4 4 C 1.46504 * 120.00265 * 85.00234 * 3 2 1 5 5 C 1.53000 * 109.46739 * 275.00177 * 4 3 2 6 6 C 1.50707 * 109.46899 * 180.02562 * 5 4 3 7 7 C 1.38227 * 119.62059 * 125.01804 * 6 5 4 8 8 C 1.38627 * 119.15702 * 179.74122 * 7 6 5 9 9 C 1.38669 * 118.42389 * 0.47826 * 8 7 6 10 10 C 1.38186 * 119.16143 * 359.49762 * 9 8 7 11 11 N 1.31856 * 119.61137 * 304.99234 * 6 5 4 12 12 S 1.65599 * 119.99957 * 264.99647 * 3 2 1 13 13 O 1.42102 * 106.40105 * 23.54192 * 12 3 2 14 14 O 1.42099 * 106.40157 * 156.45978 * 12 3 2 15 15 N 1.65600 * 107.21920 * 270.00310 * 12 3 2 16 16 C 1.46494 * 119.99928 * 90.00033 * 15 12 3 17 17 C 1.46502 * 120.00030 * 269.99959 * 15 12 3 18 18 H 1.09004 * 109.47081 * 359.97438 * 17 15 12 19 19 C 1.52998 * 109.46993 * 240.00125 * 17 15 12 20 20 C 1.50694 * 109.47237 * 119.99961 * 17 15 12 21 21 H 1.08001 * 119.99890 * 0.02562 * 20 17 15 22 22 C 1.37880 * 120.00391 * 179.97438 * 20 17 15 23 23 N 1.31512 * 119.99572 * 359.97438 * 22 20 17 24 24 Si 1.86792 * 120.00297 * 179.97438 * 22 20 17 25 25 H 1.48503 * 109.46952 * 60.00488 * 24 22 20 26 26 H 1.48501 * 109.47198 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47384 * 300.00242 * 24 22 20 28 28 H 1.09006 * 109.47703 * 300.00135 * 1 2 3 29 29 H 1.08997 * 109.47279 * 59.99813 * 1 2 3 30 30 H 1.09002 * 109.47557 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47323 * 240.00168 * 2 1 3 32 32 H 1.09003 * 109.47243 * 119.99715 * 2 1 3 33 33 H 1.08995 * 109.47107 * 154.99645 * 4 3 2 34 34 H 1.09000 * 109.46804 * 34.99124 * 4 3 2 35 35 H 1.08995 * 109.47755 * 59.99866 * 5 4 3 36 36 H 1.08999 * 109.47059 * 299.99355 * 5 4 3 37 37 H 1.07998 * 120.41916 * 359.95342 * 7 6 5 38 38 H 1.08008 * 120.78688 * 180.22921 * 8 7 6 39 39 H 1.08002 * 120.42244 * 179.78279 * 9 8 7 40 40 H 1.07996 * 119.61757 * 180.25243 * 10 9 8 41 41 H 1.09004 * 109.47320 * 90.00165 * 16 15 12 42 42 H 1.08999 * 109.47477 * 209.99988 * 16 15 12 43 43 H 1.09004 * 109.47607 * 329.99902 * 16 15 12 44 44 H 1.09002 * 109.46996 * 179.97438 * 19 17 15 45 45 H 1.08998 * 109.47374 * 300.00066 * 19 17 15 46 46 H 1.08998 * 109.46990 * 60.00001 * 19 17 15 47 47 H 0.97001 * 120.00195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 1.2639 5 6 0.8157 2.7383 1.6413 6 6 0.9598 3.4872 2.9411 7 6 0.6025 4.8210 3.0043 8 6 0.7339 5.4992 4.2062 9 6 1.2313 4.8101 5.3019 10 6 1.5673 3.4769 5.1632 11 7 1.4247 2.8623 4.0050 12 16 2.4121 2.1202 -1.4287 13 8 1.6868 1.4415 -2.4448 14 8 2.3055 3.5186 -1.1998 15 7 4.0144 1.8137 -1.7137 16 6 4.4089 0.6239 -2.4717 17 6 5.0372 2.7325 -1.2078 18 1 4.5569 3.5524 -0.6736 19 6 5.8448 3.2923 -2.3806 20 6 5.9578 1.9932 -0.2715 21 1 5.7973 0.9437 -0.0733 22 6 7.0056 2.6562 0.3315 23 7 7.2019 3.9337 0.0891 24 14 8.1462 1.7398 1.4927 25 1 8.8000 0.6225 0.7651 26 1 9.1838 2.6708 2.0045 27 1 7.3622 1.1975 2.6312 28 1 -0.3635 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9079 2.8919 1.1513 34 1 2.4688 1.4183 2.0480 35 1 0.0660 1.9552 1.7539 36 1 0.5050 3.4287 0.8572 37 1 0.2226 5.3274 2.1293 38 1 0.4592 6.5407 4.2862 39 1 1.3504 5.3078 6.2530 40 1 1.9515 2.9321 6.0128 41 1 4.4546 0.8678 -3.5331 42 1 5.3888 0.2863 -2.1340 43 1 3.6771 -0.1680 -2.3120 44 1 6.6055 3.9763 -2.0042 45 1 6.3249 2.4728 -2.9152 46 1 5.1789 3.8271 -3.0578 47 1 7.9388 4.4003 0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800902038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:18 Heat of formation + Delta-G solvation = -60.822759 kcal Electronic energy + Delta-G solvation = -29381.932300 eV Core-core repulsion = 25497.826434 eV Total energy + Delta-G solvation = -3884.105866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.10609 -38.40260 -38.16858 -37.89008 -36.87687 -34.51441 -34.26484 -33.21689 -31.53330 -30.94547 -29.36522 -27.26417 -27.00377 -25.16422 -24.34078 -23.53050 -22.58195 -22.34543 -19.90797 -18.76439 -18.50543 -18.28993 -17.75016 -17.35310 -17.05037 -16.66134 -16.31597 -15.85343 -15.57904 -15.19770 -14.93382 -14.79786 -14.72120 -14.41820 -14.25551 -13.95341 -13.86114 -13.73215 -13.44290 -13.34625 -13.20937 -13.12506 -13.09935 -12.98934 -12.76698 -12.70221 -12.65971 -12.45621 -12.24810 -12.14690 -12.01333 -11.80989 -11.57743 -11.20025 -10.77520 -10.50113 -10.43724 -10.14088 -9.79942 -9.62766 -8.09501 -6.24103 -0.33838 0.20211 0.40066 1.45198 1.45700 1.52842 1.96076 2.44254 2.53613 2.88122 3.18830 3.34268 3.39718 3.64159 3.88511 4.03484 4.11133 4.17263 4.20573 4.27040 4.31858 4.37196 4.46470 4.54750 4.64392 4.67843 4.76051 4.77797 4.88539 4.92488 4.95047 4.95331 5.00122 5.11345 5.14754 5.23886 5.25571 5.29491 5.33281 5.42874 5.56619 5.61507 5.76387 5.83848 5.87958 6.10446 6.28302 6.84499 7.07985 7.45342 8.94916 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008401 B = 0.005312 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.197879 B = 5269.723697 C = 7207.991850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.114 3.886 3 N -0.999 5.999 4 C 0.147 3.853 5 C -0.086 4.086 6 C 0.114 3.886 7 C -0.184 4.184 8 C -0.077 4.077 9 C -0.176 4.176 10 C 0.086 3.914 11 N -0.506 5.506 12 S 2.787 3.213 13 O -1.000 7.000 14 O -1.012 7.012 15 N -1.000 6.000 16 C 0.100 3.900 17 C 0.275 3.725 18 H 0.022 0.978 19 C -0.138 4.138 20 C -0.527 4.527 21 H 0.068 0.932 22 C 0.018 3.982 23 N -0.917 5.917 24 Si 0.955 3.045 25 H -0.268 1.268 26 H -0.288 1.288 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.177 0.823 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.044 0.956 46 H 0.017 0.983 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.801 -4.150 7.701 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.011 4.011 3 N -0.838 5.838 4 C 0.021 3.979 5 C -0.125 4.125 6 C -0.024 4.024 7 C -0.203 4.203 8 C -0.102 4.102 9 C -0.196 4.196 10 C -0.071 4.071 11 N -0.216 5.216 12 S 2.797 3.203 13 O -0.984 6.984 14 O -0.996 6.996 15 N -0.841 5.841 16 C -0.046 4.046 17 C 0.170 3.830 18 H 0.039 0.961 19 C -0.198 4.198 20 C -0.567 4.567 21 H 0.086 0.914 22 C -0.182 4.182 23 N -0.557 5.557 24 Si 0.781 3.219 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.198 1.198 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.183 0.817 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.036 -4.408 7.090 15.480 hybrid contribution 0.942 0.744 0.657 1.368 sum -12.094 -3.664 7.747 14.822 Atomic orbital electron populations 1.22323 0.95032 1.03655 1.02036 1.21485 0.95385 0.80169 1.04054 1.57873 1.79741 1.24409 1.21796 1.20978 0.95964 0.95546 0.85398 1.21083 0.99082 1.00073 0.92273 1.21207 0.94763 0.92275 0.94112 1.22267 1.02567 0.95205 1.00302 1.21982 0.94911 1.01451 0.91889 1.22500 1.00134 0.95799 1.01142 1.23261 0.95484 0.93373 0.95015 1.67423 1.13558 1.40608 0.99997 1.01586 0.72849 0.72618 0.73207 1.93513 1.71689 1.76225 1.56989 1.93520 1.86826 1.32961 1.86301 1.57732 1.24141 1.34851 1.67418 1.21391 1.02428 0.85743 0.95002 1.18367 0.85596 0.87240 0.91765 0.96058 1.21942 1.00297 1.00343 0.97224 1.21556 1.12095 0.96953 1.26067 0.91433 1.25657 0.98902 0.95524 0.98080 1.70008 1.31490 1.09890 1.44276 0.85658 0.78484 0.78454 0.79329 1.19286 1.21410 1.19812 0.91483 0.93663 0.89172 0.90206 0.88567 0.93174 0.88931 0.87718 0.90674 0.84127 0.82056 0.81651 0.80561 0.93071 0.90496 0.90667 0.91129 0.93720 0.96395 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.73 10.02 71.98 0.72 -3.01 16 2 C 0.11 2.88 6.09 86.38 0.53 3.41 16 3 N -1.00 -33.06 2.87 -515.79 -1.48 -34.54 16 4 C 0.15 5.01 5.23 86.38 0.45 5.46 16 5 C -0.09 -2.51 5.72 29.85 0.17 -2.34 16 6 C 0.11 3.33 6.18 42.55 0.26 3.60 16 7 C -0.18 -4.72 9.71 22.36 0.22 -4.50 16 8 C -0.08 -1.56 10.18 22.47 0.23 -1.33 16 9 C -0.18 -3.33 10.11 22.36 0.23 -3.11 16 10 C 0.09 1.96 11.18 84.67 0.95 2.90 16 11 N -0.51 -14.64 9.88 -183.88 -1.82 -16.46 16 12 S 2.79 112.59 5.96 -56.49 -0.34 112.25 16 13 O -1.00 -40.40 16.18 -128.00 -2.07 -42.47 16 14 O -1.01 -47.63 15.67 -128.00 -2.01 -49.63 16 15 N -1.00 -42.33 3.12 -520.46 -1.62 -43.95 16 16 C 0.10 3.50 9.28 127.77 1.19 4.69 16 17 C 0.27 13.79 2.62 44.24 0.12 13.90 16 18 H 0.02 1.23 6.91 -2.39 -0.02 1.21 16 19 C -0.14 -6.79 8.97 71.98 0.65 -6.14 16 20 C -0.53 -27.19 7.99 25.60 0.20 -26.98 16 21 H 0.07 3.34 7.33 -2.91 -0.02 3.32 16 22 C 0.02 0.96 5.30 84.66 0.45 1.41 16 23 N -0.92 -51.47 11.32 21.45 0.24 -51.23 16 24 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.07 1.36 5.68 -2.38 -0.01 1.35 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.96 7.26 -2.39 -0.02 1.95 16 32 H 0.10 2.08 8.00 -2.39 -0.02 2.06 16 33 H 0.05 2.08 7.61 -2.39 -0.02 2.06 16 34 H 0.09 2.99 7.81 -2.39 -0.02 2.97 16 35 H 0.10 2.62 5.68 -2.39 -0.01 2.60 16 36 H 0.07 2.29 7.87 -2.39 -0.02 2.27 16 37 H 0.14 3.30 7.95 -2.91 -0.02 3.27 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 2.73 7.02 -2.39 -0.02 2.71 16 43 H 0.07 2.20 7.44 -2.38 -0.02 2.18 16 44 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 45 H 0.04 2.02 7.67 -2.39 -0.02 2.00 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -68.78 389.78 0.24 -68.53 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.95 Total: 25.64 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 6.35 Total: -12.06 kcal Atomic # 7 Polarization: -141.50 SS G_CDS: -4.68 Total: -146.18 kcal Atomic # 8 Polarization: -88.02 SS G_CDS: -4.08 Total: -92.10 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 112.59 SS G_CDS: -0.34 Total: 112.25 kcal Total: -68.78 0.24 -68.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.711 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds