Wall clock time and date at job start Wed Apr 1 2020 00:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47449 * 2 1 4 4 C 1.46504 * 119.99868 * 84.99559 * 3 2 1 5 5 C 1.53000 * 109.46739 * 85.00925 * 4 3 2 6 6 C 1.50707 * 109.46899 * 180.02562 * 5 4 3 7 7 C 1.38227 * 119.62059 * 125.01804 * 6 5 4 8 8 C 1.38627 * 119.15702 * 179.74122 * 7 6 5 9 9 C 1.38669 * 118.42389 * 0.47826 * 8 7 6 10 10 C 1.38186 * 119.16143 * 359.49762 * 9 8 7 11 11 N 1.31856 * 119.61137 * 304.99234 * 6 5 4 12 12 S 1.65603 * 120.00176 * 265.00193 * 3 2 1 13 13 O 1.42106 * 106.39744 * 23.53534 * 12 3 2 14 14 O 1.42099 * 106.40174 * 156.45471 * 12 3 2 15 15 N 1.65595 * 107.21610 * 269.99728 * 12 3 2 16 16 C 1.46496 * 120.00111 * 269.99474 * 15 12 3 17 17 C 1.46502 * 120.00072 * 89.99819 * 15 12 3 18 18 H 1.09004 * 109.47226 * 0.02562 * 17 15 12 19 19 C 1.53002 * 109.47000 * 119.99744 * 17 15 12 20 20 C 1.50694 * 109.47356 * 239.99710 * 17 15 12 21 21 H 1.08002 * 120.00033 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00370 * 179.97438 * 20 17 15 23 23 N 1.31508 * 120.00106 * 180.02562 * 22 20 17 24 24 Si 1.86796 * 119.99733 * 0.02562 * 22 20 17 25 25 H 1.48502 * 109.47213 * 90.00018 * 24 22 20 26 26 H 1.48498 * 109.47448 * 209.99616 * 24 22 20 27 27 H 1.48497 * 109.47353 * 330.00093 * 24 22 20 28 28 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46722 * 300.00141 * 1 2 3 30 30 H 1.08996 * 109.46907 * 60.00347 * 1 2 3 31 31 H 1.08998 * 109.47191 * 239.99967 * 2 1 3 32 32 H 1.09006 * 109.47375 * 119.99911 * 2 1 3 33 33 H 1.08995 * 109.47107 * 325.00394 * 4 3 2 34 34 H 1.09000 * 109.46804 * 204.99872 * 4 3 2 35 35 H 1.08995 * 109.47755 * 59.99866 * 5 4 3 36 36 H 1.08999 * 109.47059 * 299.99355 * 5 4 3 37 37 H 1.07998 * 120.41916 * 359.95342 * 7 6 5 38 38 H 1.08008 * 120.78688 * 180.22921 * 8 7 6 39 39 H 1.08002 * 120.42244 * 179.78279 * 9 8 7 40 40 H 1.07996 * 119.61757 * 180.25243 * 10 9 8 41 41 H 1.09000 * 109.47228 * 90.00430 * 16 15 12 42 42 H 1.09000 * 109.47477 * 210.00334 * 16 15 12 43 43 H 1.08998 * 109.47185 * 330.00323 * 16 15 12 44 44 H 1.09009 * 109.46912 * 180.02562 * 19 17 15 45 45 H 1.09000 * 109.47211 * 299.99637 * 19 17 15 46 46 H 1.08998 * 109.47200 * 60.00344 * 19 17 15 47 47 H 0.97000 * 120.00442 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.5152 1.7839 1.8917 6 6 3.6589 2.5318 3.1922 7 6 3.9457 1.8366 4.3520 8 6 4.0811 2.5347 5.5420 9 6 3.9123 3.9110 5.5227 10 6 3.6272 4.5377 4.3246 11 7 3.5100 3.8418 3.2104 12 16 2.4123 2.1202 -1.4287 13 8 1.6869 1.4414 -2.4448 14 8 2.3057 3.5186 -1.1998 15 7 4.0145 1.8137 -1.7137 16 6 5.0373 2.7324 -1.2079 17 6 4.4091 0.6237 -2.4717 18 1 3.5186 0.0665 -2.7629 19 6 5.1765 1.0488 -3.7252 20 6 5.2901 -0.2484 -1.6149 21 1 5.5317 0.0533 -0.6064 22 6 5.7871 -1.4320 -2.1181 23 7 6.5555 -2.1933 -1.3702 24 14 5.3688 -1.9542 -3.8621 25 1 6.3887 -1.4164 -4.7980 26 1 5.3539 -3.4368 -3.9449 27 1 4.0312 -1.4244 -4.2301 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3618 1.8097 1.9453 34 1 2.0923 3.1802 1.0756 35 1 4.3117 2.0829 1.2104 36 1 3.5813 0.7124 2.0801 37 1 4.0662 0.7636 4.3307 38 1 4.3087 2.0185 6.4630 39 1 4.0071 4.4864 6.4317 40 1 3.4983 5.6096 4.3004 41 1 5.3433 2.4212 -0.2091 42 1 5.9004 2.7173 -1.8734 43 1 4.6293 3.7422 -1.1648 44 1 5.4697 0.1634 -4.2894 45 1 4.5392 1.6796 -4.3450 46 1 6.0670 1.6062 -3.4345 47 1 6.9055 -3.0258 -1.7242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800902039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:32 Heat of formation + Delta-G solvation = -31.680334 kcal Electronic energy + Delta-G solvation = -29517.831645 eV Core-core repulsion = 25634.989489 eV Total energy + Delta-G solvation = -3882.842156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.24098 -36.90159 -36.83899 -36.37411 -35.30445 -33.37653 -32.52099 -32.35764 -30.51213 -29.99257 -28.07448 -25.75904 -25.00554 -24.29299 -23.46718 -22.43289 -21.31639 -20.74395 -18.23506 -17.39914 -17.07470 -16.92623 -16.50496 -16.17844 -15.96225 -15.50573 -15.14221 -14.50134 -14.37124 -13.83829 -13.61377 -13.51980 -13.42784 -13.35288 -13.00214 -12.89923 -12.69011 -12.29145 -12.16495 -12.06182 -11.95517 -11.89962 -11.61328 -11.53187 -11.47656 -11.38273 -11.20277 -11.03788 -10.75197 -10.51169 -10.43487 -10.14328 -9.93513 -9.61620 -9.47433 -9.41191 -9.09313 -8.71193 -8.64420 -8.07100 -6.18065 -4.18676 1.03748 1.16842 1.22017 3.22031 3.34023 3.35116 3.37823 3.74879 4.00500 4.28429 4.32073 4.64801 4.75550 4.85650 4.98556 5.01867 5.05858 5.13570 5.34763 5.36634 5.47042 5.53335 5.57163 5.63632 5.67571 5.73481 5.81698 5.97071 6.04267 6.07186 6.11716 6.15779 6.23241 6.26133 6.33626 6.39502 6.44841 6.51343 6.57501 6.57778 6.68916 6.84125 6.93511 7.31646 7.38942 7.64037 7.97851 8.42155 8.85761 9.43516 10.94191 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.004249 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.393948 B = 6588.144975 C = 7308.841785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -1.003 6.003 4 C 0.131 3.869 5 C -0.099 4.099 6 C 0.142 3.858 7 C -0.168 4.168 8 C -0.075 4.075 9 C -0.185 4.185 10 C 0.102 3.898 11 N -0.479 5.479 12 S 2.780 3.220 13 O -0.981 6.981 14 O -0.989 6.989 15 N -0.985 5.985 16 C 0.098 3.902 17 C 0.239 3.761 18 H 0.055 0.945 19 C -0.160 4.160 20 C -0.523 4.523 21 H 0.083 0.917 22 C 0.077 3.923 23 N -0.894 5.894 24 Si 0.874 3.126 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.261 1.261 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.034 0.966 46 H 0.059 0.941 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 7.941 11.564 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.003 4.003 3 N -0.840 5.840 4 C 0.004 3.996 5 C -0.139 4.139 6 C 0.004 3.996 7 C -0.188 4.188 8 C -0.101 4.101 9 C -0.205 4.205 10 C -0.056 4.056 11 N -0.188 5.188 12 S 2.789 3.211 13 O -0.965 6.965 14 O -0.973 6.973 15 N -0.826 5.826 16 C -0.048 4.048 17 C 0.134 3.866 18 H 0.073 0.927 19 C -0.219 4.219 20 C -0.562 4.562 21 H 0.101 0.899 22 C -0.126 4.126 23 N -0.531 5.531 24 Si 0.704 3.296 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.186 1.186 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.426 8.705 10.241 15.356 hybrid contribution 0.629 -1.189 0.313 1.381 sum -6.797 7.516 10.554 14.631 Atomic orbital electron populations 1.22219 0.96611 1.02063 1.02098 1.21180 0.93590 0.81488 1.03997 1.58036 1.79934 1.23700 1.22311 1.21164 0.95717 0.97610 0.85089 1.21197 0.99990 0.99929 0.92754 1.21264 0.93465 0.89781 0.95124 1.22063 1.01931 1.01687 0.93107 1.21574 0.95840 0.94346 0.98327 1.22104 1.03062 0.95543 0.99816 1.22767 0.94776 1.00223 0.87802 1.67544 1.13311 1.07914 1.30051 1.01948 0.73312 0.72868 0.72943 1.93567 1.71137 1.75917 1.55884 1.93537 1.86745 1.30969 1.86096 1.57500 1.23087 1.34765 1.67231 1.21349 0.92779 0.91325 0.99351 1.19082 0.96515 0.82119 0.88902 0.92701 1.22435 1.00799 1.00182 0.98507 1.21202 1.30059 1.03785 1.01181 0.89914 1.24874 0.94401 0.96150 0.97220 1.69866 1.33315 1.13253 1.36697 0.87060 0.79969 0.76947 0.85612 1.20363 1.22213 1.18602 0.91674 0.92801 0.92156 0.89427 0.90502 0.90821 0.88316 0.88676 0.89240 0.84616 0.85039 0.85115 0.82872 0.93360 0.90628 0.91691 0.93302 0.94691 0.92224 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.12 1.86 6.07 -4.04 -0.02 1.83 16 3 N -1.00 -16.34 2.84 -114.38 -0.32 -16.66 16 4 C 0.13 1.88 5.54 -4.04 -0.02 1.86 16 5 C -0.10 -1.40 5.94 -27.88 -0.17 -1.57 16 6 C 0.14 1.88 6.18 -82.58 -0.51 1.37 16 7 C -0.17 -1.88 9.71 -39.44 -0.38 -2.26 16 8 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 9 C -0.19 -1.68 10.11 -39.44 -0.40 -2.08 16 10 C 0.10 1.09 11.18 -17.55 -0.20 0.90 16 11 N -0.48 -6.55 9.88 -9.47 -0.09 -6.64 16 12 S 2.78 54.15 6.06 -107.50 -0.65 53.50 16 13 O -0.98 -21.39 15.67 -57.17 -0.90 -22.28 16 14 O -0.99 -20.20 15.29 -57.17 -0.87 -21.07 16 15 N -0.98 -19.74 3.12 -115.86 -0.36 -20.10 16 16 C 0.10 1.74 9.66 59.84 0.58 2.32 16 17 C 0.24 5.42 2.21 -69.08 -0.15 5.27 16 18 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 19 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 20 C -0.52 -13.30 8.95 -34.44 -0.31 -13.61 16 21 H 0.08 2.24 7.89 -52.49 -0.41 1.82 16 22 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 23 N -0.89 -25.43 13.96 55.43 0.77 -24.65 16 24 Si 0.87 20.86 24.37 -169.99 -4.14 16.72 16 25 H -0.28 -6.45 6.87 56.52 0.39 -6.07 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.50 7.61 -51.93 -0.40 1.10 16 32 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 34 H 0.10 1.55 6.72 -51.93 -0.35 1.20 16 35 H 0.10 1.50 5.67 -51.93 -0.29 1.20 16 36 H 0.09 1.20 7.87 -51.93 -0.41 0.79 16 37 H 0.14 1.33 7.95 -52.49 -0.42 0.91 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.05 0.83 5.99 -51.93 -0.31 0.52 16 42 H 0.08 1.31 6.43 -51.93 -0.33 0.97 16 43 H 0.06 1.07 7.02 -51.93 -0.36 0.71 16 44 H 0.05 1.08 3.27 -51.92 -0.17 0.91 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 1.20 6.66 -51.93 -0.35 0.85 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -31.89 382.08 -9.29 -41.18 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.10 Total: 4.35 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.38 Total: -10.08 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.01 Total: -68.06 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -1.77 Total: -43.36 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.14 Total: 16.72 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.65 Total: 53.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.89 -9.29 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.500 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds