Wall clock time and date at job start Wed Apr 1 2020 00:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47449 * 2 1 4 4 C 1.46504 * 119.99868 * 84.99559 * 3 2 1 5 5 C 1.53000 * 109.46739 * 85.00925 * 4 3 2 6 6 C 1.50707 * 109.46899 * 180.02562 * 5 4 3 7 7 C 1.38227 * 119.62059 * 125.01804 * 6 5 4 8 8 C 1.38627 * 119.15702 * 179.74122 * 7 6 5 9 9 C 1.38669 * 118.42389 * 0.47826 * 8 7 6 10 10 C 1.38186 * 119.16143 * 359.49762 * 9 8 7 11 11 N 1.31856 * 119.61137 * 304.99234 * 6 5 4 12 12 S 1.65603 * 120.00176 * 265.00193 * 3 2 1 13 13 O 1.42106 * 106.39744 * 23.53534 * 12 3 2 14 14 O 1.42099 * 106.40174 * 156.45471 * 12 3 2 15 15 N 1.65595 * 107.21610 * 269.99728 * 12 3 2 16 16 C 1.46496 * 120.00111 * 269.99474 * 15 12 3 17 17 C 1.46502 * 120.00072 * 89.99819 * 15 12 3 18 18 H 1.09004 * 109.47226 * 0.02562 * 17 15 12 19 19 C 1.53002 * 109.47000 * 119.99744 * 17 15 12 20 20 C 1.50694 * 109.47356 * 239.99710 * 17 15 12 21 21 H 1.08002 * 120.00033 * 0.02562 * 20 17 15 22 22 C 1.37879 * 120.00370 * 179.97438 * 20 17 15 23 23 N 1.31508 * 120.00106 * 180.02562 * 22 20 17 24 24 Si 1.86796 * 119.99733 * 0.02562 * 22 20 17 25 25 H 1.48502 * 109.47213 * 90.00018 * 24 22 20 26 26 H 1.48498 * 109.47448 * 209.99616 * 24 22 20 27 27 H 1.48497 * 109.47353 * 330.00093 * 24 22 20 28 28 H 1.09005 * 109.46960 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46722 * 300.00141 * 1 2 3 30 30 H 1.08996 * 109.46907 * 60.00347 * 1 2 3 31 31 H 1.08998 * 109.47191 * 239.99967 * 2 1 3 32 32 H 1.09006 * 109.47375 * 119.99911 * 2 1 3 33 33 H 1.08995 * 109.47107 * 325.00394 * 4 3 2 34 34 H 1.09000 * 109.46804 * 204.99872 * 4 3 2 35 35 H 1.08995 * 109.47755 * 59.99866 * 5 4 3 36 36 H 1.08999 * 109.47059 * 299.99355 * 5 4 3 37 37 H 1.07998 * 120.41916 * 359.95342 * 7 6 5 38 38 H 1.08008 * 120.78688 * 180.22921 * 8 7 6 39 39 H 1.08002 * 120.42244 * 179.78279 * 9 8 7 40 40 H 1.07996 * 119.61757 * 180.25243 * 10 9 8 41 41 H 1.09000 * 109.47228 * 90.00430 * 16 15 12 42 42 H 1.09000 * 109.47477 * 210.00334 * 16 15 12 43 43 H 1.08998 * 109.47185 * 330.00323 * 16 15 12 44 44 H 1.09009 * 109.46912 * 180.02562 * 19 17 15 45 45 H 1.09000 * 109.47211 * 299.99637 * 19 17 15 46 46 H 1.08998 * 109.47200 * 60.00344 * 19 17 15 47 47 H 0.97000 * 120.00442 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.5152 1.7839 1.8917 6 6 3.6589 2.5318 3.1922 7 6 3.9457 1.8366 4.3520 8 6 4.0811 2.5347 5.5420 9 6 3.9123 3.9110 5.5227 10 6 3.6272 4.5377 4.3246 11 7 3.5100 3.8418 3.2104 12 16 2.4123 2.1202 -1.4287 13 8 1.6869 1.4414 -2.4448 14 8 2.3057 3.5186 -1.1998 15 7 4.0145 1.8137 -1.7137 16 6 5.0373 2.7324 -1.2079 17 6 4.4091 0.6237 -2.4717 18 1 3.5186 0.0665 -2.7629 19 6 5.1765 1.0488 -3.7252 20 6 5.2901 -0.2484 -1.6149 21 1 5.5317 0.0533 -0.6064 22 6 5.7871 -1.4320 -2.1181 23 7 6.5555 -2.1933 -1.3702 24 14 5.3688 -1.9542 -3.8621 25 1 6.3887 -1.4164 -4.7980 26 1 5.3539 -3.4368 -3.9449 27 1 4.0312 -1.4244 -4.2301 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3618 1.8097 1.9453 34 1 2.0923 3.1802 1.0756 35 1 4.3117 2.0829 1.2104 36 1 3.5813 0.7124 2.0801 37 1 4.0662 0.7636 4.3307 38 1 4.3087 2.0185 6.4630 39 1 4.0071 4.4864 6.4317 40 1 3.4983 5.6096 4.3004 41 1 5.3433 2.4212 -0.2091 42 1 5.9004 2.7173 -1.8734 43 1 4.6293 3.7422 -1.1648 44 1 5.4697 0.1634 -4.2894 45 1 4.5392 1.6796 -4.3450 46 1 6.0670 1.6062 -3.4345 47 1 6.9055 -3.0258 -1.7242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800902039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:28 Heat of formation + Delta-G solvation = -53.254932 kcal Electronic energy + Delta-G solvation = -29518.767189 eV Core-core repulsion = 25634.989489 eV Total energy + Delta-G solvation = -3883.777700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08314 -38.47569 -38.17242 -38.02905 -36.93991 -34.53106 -34.32302 -33.19259 -31.80559 -31.52646 -29.14680 -27.36760 -26.90380 -25.33532 -24.28860 -23.59515 -22.64505 -22.22733 -19.73095 -18.99716 -18.61955 -18.43483 -17.68273 -17.40195 -17.10556 -16.88395 -16.35749 -15.93815 -15.49809 -15.30126 -15.14010 -14.88854 -14.61036 -14.45306 -14.31188 -14.17708 -14.04461 -13.85743 -13.72599 -13.53355 -13.27286 -13.16335 -13.10931 -13.05583 -12.94222 -12.79198 -12.65717 -12.41867 -12.17216 -12.02169 -11.93420 -11.69637 -11.45969 -11.29911 -10.74880 -10.72715 -10.39548 -10.11791 -9.74583 -9.72563 -8.25883 -6.28412 -0.37852 0.22998 0.43788 1.31956 1.40953 1.47907 1.87860 2.33703 2.47284 2.91039 3.08816 3.29021 3.41379 3.73498 3.82499 4.01881 4.08839 4.18402 4.20358 4.30703 4.34478 4.42391 4.43588 4.49976 4.53404 4.62924 4.64982 4.69155 4.74186 4.75380 4.87809 4.88129 4.94097 4.97655 5.05917 5.13534 5.25486 5.28285 5.32790 5.34186 5.36730 5.48231 5.56778 5.65388 5.86965 5.92263 6.38371 6.76498 7.13778 7.36371 8.89161 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012028 B = 0.004249 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.393948 B = 6588.144975 C = 7308.841785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.999 5.999 4 C 0.134 3.866 5 C -0.093 4.093 6 C 0.118 3.882 7 C -0.176 4.176 8 C -0.075 4.075 9 C -0.174 4.174 10 C 0.086 3.914 11 N -0.512 5.512 12 S 2.787 3.213 13 O -1.006 7.006 14 O -1.001 7.001 15 N -0.990 5.990 16 C 0.096 3.904 17 C 0.241 3.759 18 H 0.044 0.956 19 C -0.162 4.162 20 C -0.509 4.509 21 H 0.058 0.942 22 C 0.032 3.968 23 N -0.934 5.934 24 Si 0.920 3.080 25 H -0.265 1.265 26 H -0.296 1.296 27 H -0.255 1.255 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 8.594 12.969 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.838 5.838 4 C 0.009 3.991 5 C -0.133 4.133 6 C -0.020 4.020 7 C -0.196 4.196 8 C -0.101 4.101 9 C -0.194 4.194 10 C -0.071 4.071 11 N -0.222 5.222 12 S 2.797 3.203 13 O -0.990 6.990 14 O -0.985 6.985 15 N -0.830 5.830 16 C -0.049 4.049 17 C 0.135 3.865 18 H 0.061 0.939 19 C -0.221 4.221 20 C -0.548 4.548 21 H 0.076 0.924 22 C -0.168 4.168 23 N -0.574 5.574 24 Si 0.748 3.252 25 H -0.191 1.191 26 H -0.224 1.224 27 H -0.180 1.180 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.191 0.809 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.046 9.383 11.636 16.976 hybrid contribution 0.808 -1.308 0.052 1.538 sum -7.238 8.076 11.688 15.945 Atomic orbital electron populations 1.22188 0.94708 1.03450 1.02140 1.21339 0.95192 0.80615 1.03706 1.57840 1.79655 1.24237 1.22054 1.21241 0.96912 0.96592 0.84392 1.21056 0.98848 1.00149 0.93238 1.21120 0.95647 0.90031 0.95159 1.22225 1.01824 1.02296 0.93252 1.21979 0.94669 0.94717 0.98713 1.22487 1.00833 0.95688 1.00365 1.23232 0.94754 1.01262 0.87847 1.67465 1.14549 1.08337 1.31887 1.01566 0.72957 0.72536 0.73211 1.93527 1.71663 1.76303 1.57490 1.93516 1.86802 1.31775 1.86375 1.57461 1.23783 1.34201 1.67517 1.21456 0.92561 0.91442 0.99442 1.18878 0.95539 0.82673 0.89384 0.93859 1.22410 1.01417 1.00419 0.97874 1.21303 1.29280 1.03845 1.00408 0.92375 1.25469 0.94562 0.96412 1.00316 1.69974 1.35118 1.13948 1.38396 0.86309 0.80286 0.76457 0.82192 1.19104 1.22408 1.17964 0.89658 0.90927 0.93876 0.91892 0.88615 0.88398 0.89665 0.91018 0.89135 0.83780 0.82025 0.81731 0.80864 0.93279 0.90174 0.90501 0.93853 0.92824 0.91202 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 10.24 71.98 0.74 -3.39 16 2 C 0.12 3.48 6.07 86.38 0.52 4.01 16 3 N -1.00 -32.52 2.84 -515.78 -1.47 -33.99 16 4 C 0.13 3.83 5.54 86.38 0.48 4.31 16 5 C -0.09 -2.67 5.94 29.85 0.18 -2.49 16 6 C 0.12 3.08 6.18 42.55 0.26 3.34 16 7 C -0.18 -3.71 9.71 22.36 0.22 -3.49 16 8 C -0.07 -1.20 10.18 22.47 0.23 -0.97 16 9 C -0.17 -2.63 10.11 22.36 0.23 -2.40 16 10 C 0.09 1.71 11.18 84.67 0.95 2.66 16 11 N -0.51 -13.77 9.88 -183.88 -1.82 -15.59 16 12 S 2.79 109.21 6.06 -56.49 -0.34 108.87 16 13 O -1.01 -44.17 15.67 -128.00 -2.01 -46.18 16 14 O -1.00 -40.92 15.29 -128.00 -1.96 -42.88 16 15 N -0.99 -39.82 3.12 -520.46 -1.62 -41.44 16 16 C 0.10 3.43 9.66 127.77 1.23 4.66 16 17 C 0.24 10.94 2.21 44.24 0.10 11.03 16 18 H 0.04 2.09 5.97 -2.38 -0.01 2.08 16 19 C -0.16 -6.76 8.65 71.98 0.62 -6.13 16 20 C -0.51 -26.21 8.95 25.60 0.23 -25.98 16 21 H 0.06 3.24 7.89 -2.91 -0.02 3.21 16 22 C 0.03 1.70 5.45 84.66 0.46 2.16 16 23 N -0.93 -54.00 13.96 21.45 0.30 -53.70 16 24 Si 0.92 42.68 24.37 68.60 1.67 44.35 16 25 H -0.26 -11.73 6.87 99.48 0.68 -11.05 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.26 -11.51 6.53 99.48 0.65 -10.86 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 2.20 7.61 -2.39 -0.02 2.18 16 32 H 0.10 2.47 8.11 -2.38 -0.02 2.45 16 33 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 34 H 0.09 2.69 6.72 -2.39 -0.02 2.68 16 35 H 0.07 2.35 5.67 -2.39 -0.01 2.34 16 36 H 0.09 2.47 7.87 -2.39 -0.02 2.45 16 37 H 0.14 2.65 7.95 -2.91 -0.02 2.63 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.05 1.73 5.99 -2.39 -0.01 1.72 16 42 H 0.08 2.74 6.43 -2.39 -0.02 2.73 16 43 H 0.08 2.53 7.02 -2.39 -0.02 2.52 16 44 H 0.04 1.84 3.27 -2.38 -0.01 1.84 16 45 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.07 2.72 6.66 -2.39 -0.02 2.70 16 47 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -68.95 382.08 0.09 -68.86 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.89 Total: 24.38 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 6.44 Total: -12.69 kcal Atomic # 7 Polarization: -140.11 SS G_CDS: -4.61 Total: -144.72 kcal Atomic # 8 Polarization: -85.09 SS G_CDS: -3.96 Total: -89.05 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.67 Total: 44.35 kcal Atomic # 16 Polarization: 109.21 SS G_CDS: -0.34 Total: 108.87 kcal Total: -68.95 0.09 -68.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.604 kcal (2) G-P(sol) polarization free energy of solvation -68.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds