Wall clock time and date at job start Wed Apr 1 2020 00:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 C 1.53004 * 109.46958 * 120.00074 * 2 1 3 5 5 H 1.09002 * 109.47007 * 186.03779 * 4 2 1 6 6 N 1.46498 * 109.46774 * 66.03716 * 4 2 1 7 7 S 1.65598 * 119.99977 * 96.75401 * 6 4 2 8 8 O 1.42103 * 106.40162 * 180.31251 * 7 6 4 9 9 O 1.42094 * 106.40250 * 313.23493 * 7 6 4 10 10 N 1.65606 * 107.21863 * 66.77390 * 7 6 4 11 11 C 1.46496 * 119.99948 * 269.99679 * 10 7 6 12 12 C 1.46497 * 119.99720 * 90.00126 * 10 7 6 13 13 H 1.08996 * 109.47805 * 359.97438 * 12 10 7 14 14 C 1.52996 * 109.47215 * 120.00032 * 12 10 7 15 15 C 1.50701 * 109.46907 * 239.99902 * 12 10 7 16 16 H 1.08000 * 120.00029 * 0.02562 * 15 12 10 17 17 C 1.37886 * 120.00105 * 180.02562 * 15 12 10 18 18 N 1.31510 * 119.99767 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 12 20 20 H 1.48489 * 109.47502 * 59.99479 * 19 17 15 21 21 H 1.48499 * 109.47171 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46973 * 299.99465 * 19 17 15 23 23 C 1.50697 * 109.47050 * 306.03481 * 4 2 1 24 24 C 1.38229 * 119.61921 * 121.97589 * 23 4 2 25 25 C 1.38628 * 119.16137 * 180.02562 * 24 23 4 26 26 C 1.38670 * 118.42358 * 359.97438 * 25 24 23 27 27 C 1.38189 * 119.16085 * 0.28213 * 26 25 24 28 28 N 1.31853 * 119.61889 * 302.00389 * 23 4 2 29 29 H 1.08997 * 109.47093 * 305.74256 * 1 2 3 30 30 H 1.09004 * 109.46646 * 65.73971 * 1 2 3 31 31 H 1.08994 * 109.47290 * 185.73417 * 1 2 3 32 32 H 1.09002 * 109.46917 * 239.99996 * 2 1 3 33 33 H 1.09002 * 109.47277 * 171.96170 * 3 2 1 34 34 H 1.09005 * 109.47423 * 291.95468 * 3 2 1 35 35 H 1.09001 * 109.47145 * 51.95829 * 3 2 1 36 36 H 0.97002 * 119.99447 * 276.74441 * 6 4 2 37 37 H 1.09007 * 109.46614 * 90.00242 * 11 10 7 38 38 H 1.08997 * 109.46961 * 210.00099 * 11 10 7 39 39 H 1.08993 * 109.47012 * 330.00514 * 11 10 7 40 40 H 1.09002 * 109.47193 * 179.97438 * 14 12 10 41 41 H 1.08995 * 109.47308 * 299.99579 * 14 12 10 42 42 H 1.09001 * 109.47260 * 59.99574 * 14 12 10 43 43 H 0.97002 * 120.00047 * 179.97438 * 18 17 15 44 44 H 1.08002 * 120.41464 * 0.04336 * 24 23 4 45 45 H 1.08004 * 120.78422 * 180.02562 * 25 24 23 46 46 H 1.07993 * 120.42198 * 180.02562 * 26 25 24 47 47 H 1.07994 * 119.61443 * 179.70051 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1246 -0.6286 1.3050 6 7 1.6738 -2.1380 1.1787 7 16 2.7684 -3.2494 0.6230 8 8 2.1175 -4.5117 0.6697 9 8 3.3243 -2.7052 -0.5661 10 7 4.0011 -3.3178 1.7267 11 6 5.1589 -2.4311 1.5876 12 6 3.9337 -4.2651 2.8422 13 1 3.0063 -4.8343 2.7801 14 6 5.1256 -5.2217 2.7716 15 6 3.9724 -3.5097 4.1457 16 1 4.0400 -2.4318 4.1433 17 6 3.9216 -4.1947 5.3413 18 7 3.8388 -5.5072 5.3441 19 14 3.9689 -3.2583 6.9569 20 1 2.8115 -2.3306 7.0254 21 1 3.9020 -4.2185 8.0877 22 1 5.2317 -2.4815 7.0420 23 6 1.4194 -0.1024 2.4751 24 6 0.6785 -0.8891 3.3371 25 6 0.1114 -0.3098 4.4616 26 6 0.3120 1.0451 4.6785 27 6 1.0603 1.7689 3.7699 28 7 1.5889 1.1834 2.7129 29 1 -0.3633 0.6003 0.8341 30 1 -0.3633 0.4223 -0.9370 31 1 -0.3633 -1.0225 0.1027 32 1 1.8933 -0.5138 -0.8900 33 1 3.1205 1.4459 0.1437 34 1 1.7989 1.9132 -0.9532 35 1 1.5640 1.9961 0.8094 36 1 0.7902 -2.4250 1.4578 37 1 4.9719 -1.5022 2.1265 38 1 6.0419 -2.9191 2.0001 39 1 5.3241 -2.2122 0.5327 40 1 5.0757 -5.9263 3.6018 41 1 5.0976 -5.7681 1.8289 42 1 6.0529 -4.6522 2.8340 43 1 3.8034 -5.9891 6.1851 44 1 0.5434 -1.9418 3.1370 45 1 -0.4721 -0.9000 5.1528 46 1 -0.1146 1.5293 5.5444 47 1 1.2170 2.8255 3.9290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800914307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:38 Heat of formation + Delta-G solvation = -36.867613 kcal Electronic energy + Delta-G solvation = -30196.902732 eV Core-core repulsion = 26313.835639 eV Total energy + Delta-G solvation = -3883.067093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.45141 -37.27204 -36.59112 -36.16804 -35.28633 -33.20237 -32.63291 -32.10245 -30.71058 -29.10146 -27.06813 -26.00679 -25.54868 -25.15986 -23.36950 -22.46685 -20.79927 -19.90212 -18.90334 -17.67256 -17.07666 -16.71987 -16.38675 -15.86459 -15.67770 -15.30142 -15.05677 -14.89578 -14.36006 -14.08669 -13.53292 -13.40149 -13.26153 -13.19963 -12.93187 -12.83877 -12.06380 -12.02099 -11.93732 -11.80377 -11.72112 -11.64163 -11.51043 -11.38159 -11.24121 -11.18003 -11.02783 -10.87197 -10.82231 -10.65291 -10.49112 -10.30105 -10.07968 -9.76950 -9.52945 -9.23833 -9.11068 -8.79299 -8.51153 -7.99409 -6.12140 -4.20111 1.19106 1.21043 1.39224 3.21411 3.27689 3.28734 3.39740 3.86827 4.07961 4.26797 4.32714 4.75533 4.85677 4.90853 5.02623 5.08689 5.17899 5.18408 5.26922 5.28794 5.40116 5.63565 5.67837 5.74499 5.81985 5.86481 5.89502 6.06211 6.12305 6.15148 6.19988 6.26566 6.31084 6.34187 6.46111 6.59780 6.62636 6.81702 6.83790 6.85573 7.06810 7.14946 7.48434 7.61237 7.75680 8.01797 8.04507 8.23725 8.83106 9.46210 10.92786 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.006330 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.403027 B = 4422.511523 C = 6388.463853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.146 4.146 4 C 0.218 3.782 5 H 0.102 0.898 6 N -1.124 6.124 7 S 2.782 3.218 8 O -0.979 6.979 9 O -0.993 6.993 10 N -0.989 5.989 11 C 0.097 3.903 12 C 0.269 3.731 13 H 0.059 0.941 14 C -0.146 4.146 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.134 3.866 24 C -0.151 4.151 25 C -0.070 4.070 26 C -0.180 4.180 27 C 0.095 3.905 28 N -0.473 5.473 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.013 0.987 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.139 0.861 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 12.490 -4.602 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.204 4.204 4 C 0.109 3.891 5 H 0.120 0.880 6 N -0.882 5.882 7 S 2.790 3.210 8 O -0.963 6.963 9 O -0.977 6.977 10 N -0.832 5.832 11 C -0.050 4.050 12 C 0.166 3.834 13 H 0.076 0.924 14 C -0.206 4.206 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.004 4.004 24 C -0.171 4.171 25 C -0.096 4.096 26 C -0.200 4.200 27 C -0.062 4.062 28 N -0.182 5.182 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.247 0.753 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.032 0.968 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.157 0.843 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.642 12.350 -5.930 14.816 hybrid contribution -0.782 0.018 2.395 2.520 sum -6.423 12.368 -3.535 14.377 Atomic orbital electron populations 1.21803 0.95307 1.01560 1.01369 1.21535 0.96258 0.97240 0.97323 1.21927 1.01500 0.95152 1.01779 1.19397 0.99172 0.79432 0.91079 0.88006 1.56331 1.29622 1.18070 1.84167 1.01864 0.72935 0.72652 0.73525 1.93603 1.75572 1.39863 1.87309 1.93541 1.78553 1.80388 1.45179 1.57670 1.31848 1.49120 1.44524 1.21313 0.90064 0.93329 1.00271 1.18715 0.96543 0.85760 0.82384 0.92382 1.22066 0.98271 1.00166 1.00058 1.21318 1.51293 0.93456 0.90048 0.92135 1.24890 0.95011 0.94823 0.98955 1.69864 1.49740 1.06065 1.26861 0.86647 0.78626 0.79554 0.83088 1.20336 1.21257 1.20335 1.21127 0.94326 0.89663 0.95318 1.21951 0.98203 1.01740 0.95163 1.21594 0.96929 0.94832 0.96273 1.22081 1.01515 0.95283 1.01135 1.22663 0.93639 1.00068 0.89877 1.67397 1.20390 1.10875 1.19571 0.93033 0.92767 0.92719 0.89519 0.92711 0.93542 0.90046 0.75336 0.93971 0.90496 0.91872 0.88854 0.96814 0.94805 0.92615 0.84296 0.84948 0.85241 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.68 37.16 0.32 -1.36 16 2 C -0.10 -1.35 2.89 -90.62 -0.26 -1.61 16 3 C -0.15 -1.75 8.57 37.16 0.32 -1.43 16 4 C 0.22 3.19 2.47 -69.08 -0.17 3.02 16 5 H 0.10 1.56 6.78 -51.93 -0.35 1.20 16 6 N -1.12 -17.43 4.45 -5.88 -0.03 -17.46 16 7 S 2.78 52.71 6.06 -107.50 -0.65 52.05 16 8 O -0.98 -21.62 16.70 -57.17 -0.95 -22.58 16 9 O -0.99 -19.43 16.11 -57.17 -0.92 -20.36 16 10 N -0.99 -19.93 3.12 -115.86 -0.36 -20.29 16 11 C 0.10 1.70 9.36 59.84 0.56 2.26 16 12 C 0.27 6.40 2.62 -69.09 -0.18 6.22 16 13 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 14 C -0.15 -3.42 8.95 37.16 0.33 -3.09 16 15 C -0.52 -13.09 8.37 -34.44 -0.29 -13.38 16 16 H 0.06 1.51 7.65 -52.49 -0.40 1.11 16 17 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -23.95 11.32 55.43 0.63 -23.32 16 19 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.13 1.95 4.71 -82.59 -0.39 1.56 16 24 C -0.15 -2.17 9.22 -39.44 -0.36 -2.53 16 25 C -0.07 -0.90 10.18 -39.28 -0.40 -1.30 16 26 C -0.18 -2.05 10.11 -39.44 -0.40 -2.45 16 27 C 0.09 1.11 11.18 -17.55 -0.20 0.91 16 28 N -0.47 -6.46 7.34 -9.47 -0.07 -6.53 16 29 H 0.05 0.61 7.27 -51.93 -0.38 0.24 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.63 7.38 -51.93 -0.38 0.25 16 32 H 0.09 1.22 7.79 -51.93 -0.40 0.81 16 33 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.00 5.81 -51.93 -0.30 0.70 16 36 H 0.41 5.70 6.63 -34.47 -0.23 5.47 16 37 H 0.04 0.70 7.55 -51.93 -0.39 0.31 16 38 H 0.08 1.35 6.43 -51.93 -0.33 1.02 16 39 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 40 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 43 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.14 1.99 6.08 -52.49 -0.32 1.67 16 45 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 46 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -30.60 379.62 -9.84 -40.43 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.97 Total: 8.64 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.21 Total: -11.58 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: 0.17 Total: -67.60 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.88 Total: -42.94 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.65 Total: 52.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.60 -9.84 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.567 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds