Wall clock time and date at job start Wed Apr 1 2020 00:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 C 1.53004 * 109.46958 * 120.00074 * 2 1 3 5 5 H 1.09002 * 109.47007 * 186.03779 * 4 2 1 6 6 N 1.46498 * 109.46774 * 66.03716 * 4 2 1 7 7 S 1.65598 * 119.99977 * 96.75401 * 6 4 2 8 8 O 1.42103 * 106.40162 * 180.31251 * 7 6 4 9 9 O 1.42094 * 106.40250 * 313.23493 * 7 6 4 10 10 N 1.65606 * 107.21863 * 66.77390 * 7 6 4 11 11 C 1.46496 * 119.99948 * 269.99679 * 10 7 6 12 12 C 1.46497 * 119.99720 * 90.00126 * 10 7 6 13 13 H 1.08996 * 109.47805 * 359.97438 * 12 10 7 14 14 C 1.52996 * 109.47215 * 120.00032 * 12 10 7 15 15 C 1.50701 * 109.46907 * 239.99902 * 12 10 7 16 16 H 1.08000 * 120.00029 * 0.02562 * 15 12 10 17 17 C 1.37886 * 120.00105 * 180.02562 * 15 12 10 18 18 N 1.31510 * 119.99767 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 12 20 20 H 1.48489 * 109.47502 * 59.99479 * 19 17 15 21 21 H 1.48499 * 109.47171 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46973 * 299.99465 * 19 17 15 23 23 C 1.50697 * 109.47050 * 306.03481 * 4 2 1 24 24 C 1.38229 * 119.61921 * 121.97589 * 23 4 2 25 25 C 1.38628 * 119.16137 * 180.02562 * 24 23 4 26 26 C 1.38670 * 118.42358 * 359.97438 * 25 24 23 27 27 C 1.38189 * 119.16085 * 0.28213 * 26 25 24 28 28 N 1.31853 * 119.61889 * 302.00389 * 23 4 2 29 29 H 1.08997 * 109.47093 * 305.74256 * 1 2 3 30 30 H 1.09004 * 109.46646 * 65.73971 * 1 2 3 31 31 H 1.08994 * 109.47290 * 185.73417 * 1 2 3 32 32 H 1.09002 * 109.46917 * 239.99996 * 2 1 3 33 33 H 1.09002 * 109.47277 * 171.96170 * 3 2 1 34 34 H 1.09005 * 109.47423 * 291.95468 * 3 2 1 35 35 H 1.09001 * 109.47145 * 51.95829 * 3 2 1 36 36 H 0.97002 * 119.99447 * 276.74441 * 6 4 2 37 37 H 1.09007 * 109.46614 * 90.00242 * 11 10 7 38 38 H 1.08997 * 109.46961 * 210.00099 * 11 10 7 39 39 H 1.08993 * 109.47012 * 330.00514 * 11 10 7 40 40 H 1.09002 * 109.47193 * 179.97438 * 14 12 10 41 41 H 1.08995 * 109.47308 * 299.99579 * 14 12 10 42 42 H 1.09001 * 109.47260 * 59.99574 * 14 12 10 43 43 H 0.97002 * 120.00047 * 179.97438 * 18 17 15 44 44 H 1.08002 * 120.41464 * 0.04336 * 24 23 4 45 45 H 1.08004 * 120.78422 * 180.02562 * 25 24 23 46 46 H 1.07993 * 120.42198 * 180.02562 * 26 25 24 47 47 H 1.07994 * 119.61443 * 179.70051 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1246 -0.6286 1.3050 6 7 1.6738 -2.1380 1.1787 7 16 2.7684 -3.2494 0.6230 8 8 2.1175 -4.5117 0.6697 9 8 3.3243 -2.7052 -0.5661 10 7 4.0011 -3.3178 1.7267 11 6 5.1589 -2.4311 1.5876 12 6 3.9337 -4.2651 2.8422 13 1 3.0063 -4.8343 2.7801 14 6 5.1256 -5.2217 2.7716 15 6 3.9724 -3.5097 4.1457 16 1 4.0400 -2.4318 4.1433 17 6 3.9216 -4.1947 5.3413 18 7 3.8388 -5.5072 5.3441 19 14 3.9689 -3.2583 6.9569 20 1 2.8115 -2.3306 7.0254 21 1 3.9020 -4.2185 8.0877 22 1 5.2317 -2.4815 7.0420 23 6 1.4194 -0.1024 2.4751 24 6 0.6785 -0.8891 3.3371 25 6 0.1114 -0.3098 4.4616 26 6 0.3120 1.0451 4.6785 27 6 1.0603 1.7689 3.7699 28 7 1.5889 1.1834 2.7129 29 1 -0.3633 0.6003 0.8341 30 1 -0.3633 0.4223 -0.9370 31 1 -0.3633 -1.0225 0.1027 32 1 1.8933 -0.5138 -0.8900 33 1 3.1205 1.4459 0.1437 34 1 1.7989 1.9132 -0.9532 35 1 1.5640 1.9961 0.8094 36 1 0.7902 -2.4250 1.4578 37 1 4.9719 -1.5022 2.1265 38 1 6.0419 -2.9191 2.0001 39 1 5.3241 -2.2122 0.5327 40 1 5.0757 -5.9263 3.6018 41 1 5.0976 -5.7681 1.8289 42 1 6.0529 -4.6522 2.8340 43 1 3.8034 -5.9891 6.1851 44 1 0.5434 -1.9418 3.1370 45 1 -0.4721 -0.9000 5.1528 46 1 -0.1146 1.5293 5.5444 47 1 1.2170 2.8255 3.9290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800914307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:36 Heat of formation + Delta-G solvation = -56.347804 kcal Electronic energy + Delta-G solvation = -30197.747456 eV Core-core repulsion = 26313.835639 eV Total energy + Delta-G solvation = -3883.911817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.45377 -38.53390 -38.07546 -37.85965 -36.91841 -34.52279 -34.31751 -33.08804 -31.73874 -30.92678 -28.02329 -27.34984 -27.08901 -26.90571 -24.34176 -23.46587 -22.60674 -20.98940 -20.34492 -19.04204 -18.57578 -18.26199 -18.07817 -17.09273 -16.87377 -16.66333 -16.30202 -16.04124 -15.86190 -15.19968 -15.09475 -14.84738 -14.62350 -14.36819 -14.26573 -13.90311 -13.68898 -13.48404 -13.23047 -13.19133 -13.09210 -13.02361 -12.93517 -12.81714 -12.77939 -12.64504 -12.57201 -12.40989 -12.24704 -12.18080 -11.88750 -11.81426 -11.66869 -11.20163 -10.80605 -10.60294 -10.49564 -10.12507 -9.80400 -9.67002 -8.09262 -6.22986 -0.33169 0.22784 0.41409 1.41862 1.43676 1.50382 1.92120 2.43571 2.57099 2.89359 3.19026 3.22315 3.42047 3.76005 3.85493 4.00401 4.07820 4.10772 4.22556 4.28096 4.32094 4.37077 4.68536 4.71748 4.76018 4.77430 4.80684 4.87256 4.93291 4.96554 5.02886 5.09998 5.13773 5.15229 5.17011 5.24329 5.30895 5.36040 5.46031 5.60166 5.64384 5.68184 5.84484 5.89407 5.98918 6.12242 6.29745 6.85243 7.06548 7.46208 8.94950 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.006330 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.403027 B = 4422.511523 C = 6388.463853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.140 4.140 4 C 0.215 3.785 5 H 0.094 0.906 6 N -1.113 6.113 7 S 2.798 3.202 8 O -1.013 7.013 9 O -0.998 6.998 10 N -0.995 5.995 11 C 0.093 3.907 12 C 0.275 3.725 13 H 0.027 0.973 14 C -0.141 4.141 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.022 3.978 18 N -0.916 5.916 19 Si 0.949 3.051 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.123 3.877 24 C -0.174 4.174 25 C -0.082 4.082 26 C -0.174 4.174 27 C 0.091 3.909 28 N -0.483 5.483 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.419 0.581 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.020 0.980 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.129 0.871 45 H 0.145 0.855 46 H 0.162 0.838 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 15.103 -3.967 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.198 4.198 4 C 0.106 3.894 5 H 0.111 0.889 6 N -0.874 5.874 7 S 2.807 3.193 8 O -0.998 6.998 9 O -0.981 6.981 10 N -0.837 5.837 11 C -0.053 4.053 12 C 0.171 3.829 13 H 0.045 0.955 14 C -0.200 4.200 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.178 4.178 18 N -0.555 5.555 19 Si 0.776 3.224 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.016 4.016 24 C -0.194 4.194 25 C -0.108 4.108 26 C -0.193 4.193 27 C -0.066 4.066 28 N -0.193 5.193 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.146 0.854 45 H 0.163 0.837 46 H 0.179 0.821 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.969 14.975 -5.312 16.973 hybrid contribution -0.712 -0.716 2.183 2.405 sum -6.681 14.259 -3.128 16.054 Atomic orbital electron populations 1.21766 0.94279 1.01538 1.02042 1.21526 0.97162 0.97662 0.95911 1.21883 1.01135 0.94274 1.02538 1.19517 0.98869 0.78569 0.92409 0.88867 1.55980 1.29235 1.18302 1.83923 1.01208 0.72663 0.72153 0.73253 1.93553 1.76234 1.42255 1.87737 1.93528 1.78885 1.80339 1.45384 1.57568 1.33352 1.49247 1.43522 1.21476 0.89070 0.93150 1.01583 1.18382 0.95169 0.86179 0.83217 0.95492 1.21958 0.98727 0.99876 0.99470 1.21487 1.50509 0.93459 0.90614 0.92050 1.25571 0.94929 0.95460 1.01863 1.69993 1.50773 1.07336 1.27396 0.85745 0.78739 0.78406 0.79539 1.19577 1.21369 1.20029 1.21001 0.95021 0.90254 0.95289 1.22000 0.99530 1.01497 0.96367 1.21879 0.96985 0.95981 0.95994 1.22447 1.00518 0.94545 1.01795 1.23280 0.92724 1.01553 0.89054 1.67410 1.20916 1.10331 1.20605 0.93134 0.91384 0.92993 0.90639 0.93132 0.92146 0.90061 0.74405 0.92987 0.90577 0.90178 0.91106 0.96090 0.93664 0.92769 0.85361 0.83679 0.82075 0.79784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.68 71.98 0.62 -2.47 16 2 C -0.10 -2.57 2.89 -10.79 -0.03 -2.61 16 3 C -0.14 -3.14 8.57 71.98 0.62 -2.52 16 4 C 0.21 6.16 2.47 44.25 0.11 6.27 16 5 H 0.09 2.80 6.78 -2.39 -0.02 2.79 16 6 N -1.11 -34.78 4.45 -172.52 -0.77 -35.55 16 7 S 2.80 107.01 6.06 -56.49 -0.34 106.67 16 8 O -1.01 -45.91 16.70 -128.00 -2.14 -48.05 16 9 O -1.00 -38.69 16.11 -128.00 -2.06 -40.76 16 10 N -1.00 -40.18 3.12 -520.48 -1.62 -41.80 16 11 C 0.09 3.18 9.36 127.77 1.20 4.37 16 12 C 0.27 13.27 2.62 44.24 0.12 13.39 16 13 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 14 C -0.14 -6.67 8.95 71.98 0.64 -6.02 16 15 C -0.52 -26.17 8.37 25.60 0.21 -25.96 16 16 H 0.06 3.02 7.65 -2.91 -0.02 3.00 16 17 C 0.02 1.12 5.30 84.66 0.45 1.57 16 18 N -0.92 -50.13 11.32 21.45 0.24 -49.89 16 19 Si 0.95 41.17 29.54 68.60 2.03 43.19 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.12 3.43 4.71 42.55 0.20 3.63 16 24 C -0.17 -4.91 9.22 22.36 0.21 -4.70 16 25 C -0.08 -1.98 10.18 22.47 0.23 -1.75 16 26 C -0.17 -3.40 10.11 22.36 0.23 -3.17 16 27 C 0.09 1.85 11.18 84.67 0.95 2.80 16 28 N -0.48 -12.24 7.34 -183.89 -1.35 -13.59 16 29 H 0.05 1.13 7.27 -2.39 -0.02 1.12 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.16 7.38 -2.39 -0.02 1.14 16 32 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 33 H 0.05 1.15 8.11 -2.39 -0.02 1.13 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 35 H 0.08 1.83 5.81 -2.39 -0.01 1.82 16 36 H 0.42 11.90 6.63 -96.74 -0.64 11.26 16 37 H 0.05 1.67 7.55 -2.38 -0.02 1.65 16 38 H 0.08 2.60 6.43 -2.39 -0.02 2.59 16 39 H 0.08 2.46 7.02 -2.39 -0.02 2.44 16 40 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.04 1.98 6.66 -2.39 -0.02 1.96 16 43 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.13 3.76 6.08 -2.91 -0.02 3.75 16 45 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 46 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -64.78 379.62 0.07 -64.71 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.34 Total: 32.24 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 5.75 Total: -17.18 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -3.50 Total: -140.82 kcal Atomic # 8 Polarization: -84.61 SS G_CDS: -4.20 Total: -88.81 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 107.01 SS G_CDS: -0.34 Total: 106.67 kcal Total: -64.78 0.07 -64.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.360 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds