Wall clock time and date at job start Wed Apr 1 2020 00:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47130 * 2 1 4 4 C 1.52999 * 109.47311 * 119.99948 * 2 1 3 5 5 H 1.08999 * 109.47253 * 186.30571 * 4 2 1 6 6 N 1.46500 * 109.46784 * 66.31091 * 4 2 1 7 7 S 1.65599 * 120.00438 * 97.38434 * 6 4 2 8 8 O 1.42095 * 106.40045 * 311.77168 * 7 6 4 9 9 O 1.42097 * 106.40390 * 178.84765 * 7 6 4 10 10 N 1.65600 * 107.21264 * 65.31012 * 7 6 4 11 11 C 1.46501 * 119.99828 * 269.99706 * 10 7 6 12 12 C 1.46500 * 120.00102 * 90.00518 * 10 7 6 13 13 H 1.08996 * 109.47331 * 359.97438 * 12 10 7 14 14 C 1.53005 * 109.46753 * 239.99692 * 12 10 7 15 15 C 1.50702 * 109.47191 * 119.99792 * 12 10 7 16 16 H 1.07997 * 120.00369 * 359.97438 * 15 12 10 17 17 C 1.37883 * 119.99697 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00186 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99728 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46908 * 60.00389 * 19 17 15 21 21 H 1.48497 * 109.46880 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47410 * 300.00053 * 19 17 15 23 23 C 1.50693 * 109.47403 * 306.31064 * 4 2 1 24 24 C 1.38221 * 119.62166 * 124.99820 * 23 4 2 25 25 C 1.38636 * 119.16432 * 179.97438 * 24 23 4 26 26 C 1.38673 * 118.41876 * 359.97438 * 25 24 23 27 27 C 1.38186 * 119.16214 * 0.02562 * 26 25 24 28 28 N 1.31865 * 119.61599 * 304.72297 * 23 4 2 29 29 H 1.09005 * 109.47260 * 56.53368 * 1 2 3 30 30 H 1.08994 * 109.47283 * 176.54038 * 1 2 3 31 31 H 1.09002 * 109.46866 * 296.53824 * 1 2 3 32 32 H 1.09000 * 109.47118 * 240.00895 * 2 1 3 33 33 H 1.08999 * 109.47256 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46926 * 300.00512 * 3 2 1 35 35 H 1.09005 * 109.46719 * 59.99795 * 3 2 1 36 36 H 0.97007 * 119.99749 * 277.39081 * 6 4 2 37 37 H 1.09002 * 109.47579 * 269.99926 * 11 10 7 38 38 H 1.08995 * 109.47301 * 30.00519 * 11 10 7 39 39 H 1.09004 * 109.46836 * 150.00223 * 11 10 7 40 40 H 1.09006 * 109.47098 * 299.99431 * 14 12 10 41 41 H 1.09005 * 109.46837 * 180.02562 * 14 12 10 42 42 H 1.08993 * 109.47591 * 59.99856 * 14 12 10 43 43 H 0.96996 * 120.00214 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.41800 * 359.97438 * 24 23 4 45 45 H 1.07992 * 120.79126 * 180.02562 * 25 24 23 46 46 H 1.07988 * 120.41953 * 180.02562 * 26 25 24 47 47 H 1.07996 * 119.61837 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1242 -0.6245 1.3074 6 7 1.6796 -2.1393 1.1757 7 16 2.7849 -3.2477 0.6353 8 8 3.3293 -2.7186 -0.5659 9 8 2.1492 -4.5165 0.7078 10 7 4.0228 -3.2814 1.7348 11 6 5.1694 -2.3838 1.5745 12 6 3.9714 -4.2090 2.8676 13 1 3.0506 -4.7902 2.8197 14 6 4.0071 -3.4176 4.1766 15 6 5.1562 -5.1384 2.8099 16 1 5.8754 -5.0477 2.0094 17 6 5.3221 -6.1048 3.7794 18 7 4.4466 -6.2150 4.7546 19 14 6.7903 -7.2574 3.7076 20 1 8.0449 -6.4654 3.7722 21 1 6.7388 -8.1966 4.8566 22 1 6.7548 -8.0258 2.4374 23 6 1.4143 -0.1068 2.4747 24 6 0.7277 -0.9092 3.3665 25 6 0.1563 -0.3340 4.4911 26 6 0.2979 1.0328 4.6777 27 6 0.9985 1.7709 3.7429 28 7 1.5328 1.1893 2.6867 29 1 -0.3634 0.5667 -0.8573 30 1 -0.3633 -1.0257 -0.0620 31 1 -0.3633 0.4592 0.9194 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.7934 -2.4290 1.4434 37 1 5.9340 -2.8748 0.9723 38 1 4.8478 -1.4686 1.0775 39 1 5.5798 -2.1401 2.5545 40 1 4.9278 -2.8361 4.2247 41 1 3.9693 -4.1078 5.0195 42 1 3.1502 -2.7453 4.2183 43 1 4.5631 -6.8951 5.4364 44 1 0.6376 -1.9707 3.1895 45 1 -0.3856 -0.9362 5.2053 46 1 -0.1338 1.5142 5.5426 47 1 1.1130 2.8359 3.8807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800914308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:42 Heat of formation + Delta-G solvation = -34.247595 kcal Electronic energy + Delta-G solvation = -29890.244530 eV Core-core repulsion = 26007.291049 eV Total energy + Delta-G solvation = -3882.953480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63224 -37.35732 -36.58514 -36.17182 -35.24762 -33.34143 -32.59854 -32.22698 -30.87060 -29.12635 -27.12442 -26.10574 -25.59879 -25.13367 -23.53091 -22.60090 -20.82811 -20.00139 -18.89233 -17.75785 -17.17441 -16.84531 -16.29396 -16.05174 -15.69137 -15.35095 -15.16878 -14.95873 -14.35417 -14.17897 -13.55092 -13.50187 -13.36732 -13.22851 -13.03955 -12.84235 -12.23746 -12.01844 -12.00279 -11.86730 -11.72750 -11.70856 -11.50613 -11.35549 -11.30070 -11.20725 -10.97953 -10.87931 -10.80869 -10.74236 -10.51608 -10.29480 -10.05704 -9.93901 -9.57051 -9.27535 -9.19802 -8.94234 -8.46081 -8.00016 -6.08140 -4.14441 1.02147 1.14820 1.21501 3.30257 3.34397 3.35942 3.40121 3.69442 4.04697 4.14885 4.39920 4.61203 4.74219 4.83420 4.90627 4.97719 5.01827 5.12623 5.21918 5.23580 5.29425 5.44462 5.61614 5.67269 5.68827 5.76040 5.83614 5.99718 6.04442 6.10215 6.12098 6.13989 6.18983 6.33830 6.38918 6.49001 6.60747 6.74868 6.77680 6.79499 6.98748 7.05760 7.45178 7.62204 7.77556 7.87823 8.02673 8.26617 8.87455 9.51324 10.97512 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.004237 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.286513 B = 6607.024637 C = 7638.916136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.157 4.157 4 C 0.214 3.786 5 H 0.103 0.897 6 N -1.129 6.129 7 S 2.778 3.222 8 O -0.990 6.990 9 O -0.972 6.972 10 N -0.989 5.989 11 C 0.107 3.893 12 C 0.269 3.731 13 H 0.058 0.942 14 C -0.147 4.147 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.135 3.865 24 C -0.160 4.160 25 C -0.070 4.070 26 C -0.180 4.180 27 C 0.097 3.903 28 N -0.471 5.471 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.411 0.589 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.010 0.990 43 H 0.263 0.737 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 16.283 -1.387 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.215 4.215 4 C 0.105 3.895 5 H 0.121 0.879 6 N -0.887 5.887 7 S 2.787 3.213 8 O -0.973 6.973 9 O -0.956 6.956 10 N -0.832 5.832 11 C -0.039 4.039 12 C 0.167 3.833 13 H 0.076 0.924 14 C -0.206 4.206 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.004 4.004 24 C -0.180 4.180 25 C -0.096 4.096 26 C -0.200 4.200 27 C -0.060 4.060 28 N -0.181 5.181 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.246 0.754 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.156 0.844 45 H 0.152 0.848 46 H 0.149 0.851 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.389 16.191 -2.684 18.432 hybrid contribution -0.027 -1.127 1.322 1.737 sum -8.416 15.064 -1.362 17.309 Atomic orbital electron populations 1.21803 0.95288 1.01518 1.01434 1.21515 0.96263 0.97266 0.97230 1.22098 1.01024 0.95225 1.03166 1.19461 0.99202 0.79612 0.91206 0.87935 1.56517 1.29267 1.17996 1.84933 1.02052 0.72972 0.72660 0.73660 1.93552 1.78832 1.80751 1.44199 1.93621 1.76102 1.38861 1.87007 1.57699 1.31814 1.49455 1.44232 1.21213 0.89401 0.91168 1.02119 1.18720 0.98982 0.85464 0.80171 0.92386 1.22113 0.97142 0.99165 1.02204 1.21295 1.09012 1.15224 1.10410 0.91985 1.24897 0.96577 0.97162 0.95185 1.69841 1.35371 1.34290 1.13454 0.86557 0.82657 0.80569 0.77625 1.20246 1.21241 1.20142 1.21191 0.94434 0.89559 0.95185 1.21978 0.98907 1.01895 0.95181 1.21615 0.96483 0.94976 0.96489 1.22105 1.01661 0.95051 1.01136 1.22736 0.93416 1.00279 0.89570 1.67386 1.19436 1.11019 1.20246 0.92677 0.92752 0.93073 0.89514 0.92937 0.93468 0.88874 0.75419 0.93034 0.93395 0.90916 0.94851 0.88914 0.97113 0.92678 0.84370 0.84781 0.85056 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.79 37.16 0.33 -1.26 16 2 C -0.10 -1.27 2.89 -90.62 -0.26 -1.54 16 3 C -0.16 -1.78 8.85 37.16 0.33 -1.45 16 4 C 0.21 2.87 2.50 -69.09 -0.17 2.70 16 5 H 0.10 1.43 6.09 -51.93 -0.32 1.12 16 6 N -1.13 -16.38 4.43 -5.89 -0.03 -16.41 16 7 S 2.78 53.02 5.99 -107.50 -0.64 52.37 16 8 O -0.99 -19.94 16.67 -57.17 -0.95 -20.90 16 9 O -0.97 -22.10 16.70 -57.17 -0.95 -23.05 16 10 N -0.99 -20.04 3.12 -115.85 -0.36 -20.41 16 11 C 0.11 1.90 9.36 59.85 0.56 2.46 16 12 C 0.27 6.44 2.62 -69.08 -0.18 6.26 16 13 H 0.06 1.53 6.91 -51.93 -0.36 1.18 16 14 C -0.15 -3.25 8.95 37.16 0.33 -2.92 16 15 C -0.52 -13.85 8.37 -34.44 -0.29 -14.14 16 16 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.47 11.32 55.43 0.63 -23.85 16 19 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.13 1.70 4.55 -82.59 -0.38 1.33 16 24 C -0.16 -1.93 9.20 -39.44 -0.36 -2.29 16 25 C -0.07 -0.71 10.18 -39.27 -0.40 -1.11 16 26 C -0.18 -1.63 10.11 -39.44 -0.40 -2.02 16 27 C 0.10 0.94 11.18 -17.55 -0.20 0.75 16 28 N -0.47 -5.58 7.09 -9.48 -0.07 -5.65 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.59 7.78 -51.93 -0.40 0.19 16 31 H 0.05 0.57 6.89 -51.93 -0.36 0.21 16 32 H 0.09 1.19 7.85 -51.93 -0.41 0.79 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.06 5.24 -51.93 -0.27 0.79 16 36 H 0.41 5.20 7.04 -34.47 -0.24 4.95 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.71 6.13 -51.93 -0.32 0.40 16 39 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 40 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 41 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.14 1.66 6.19 -52.49 -0.32 1.33 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -31.89 379.15 -9.79 -41.67 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.92 Total: 6.10 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.18 Total: -11.62 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 0.17 Total: -66.31 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.91 Total: -43.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 53.02 SS G_CDS: -0.64 Total: 52.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.89 -9.79 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.425 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds