Wall clock time and date at job start Wed Apr 1 2020 00:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47130 * 2 1 4 4 C 1.52999 * 109.47311 * 119.99948 * 2 1 3 5 5 H 1.08999 * 109.47253 * 186.30571 * 4 2 1 6 6 N 1.46500 * 109.46784 * 66.31091 * 4 2 1 7 7 S 1.65599 * 120.00438 * 97.38434 * 6 4 2 8 8 O 1.42095 * 106.40045 * 311.77168 * 7 6 4 9 9 O 1.42097 * 106.40390 * 178.84765 * 7 6 4 10 10 N 1.65600 * 107.21264 * 65.31012 * 7 6 4 11 11 C 1.46501 * 119.99828 * 269.99706 * 10 7 6 12 12 C 1.46500 * 120.00102 * 90.00518 * 10 7 6 13 13 H 1.08996 * 109.47331 * 359.97438 * 12 10 7 14 14 C 1.53005 * 109.46753 * 239.99692 * 12 10 7 15 15 C 1.50702 * 109.47191 * 119.99792 * 12 10 7 16 16 H 1.07997 * 120.00369 * 359.97438 * 15 12 10 17 17 C 1.37883 * 119.99697 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00186 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99728 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46908 * 60.00389 * 19 17 15 21 21 H 1.48497 * 109.46880 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47410 * 300.00053 * 19 17 15 23 23 C 1.50693 * 109.47403 * 306.31064 * 4 2 1 24 24 C 1.38221 * 119.62166 * 124.99820 * 23 4 2 25 25 C 1.38636 * 119.16432 * 179.97438 * 24 23 4 26 26 C 1.38673 * 118.41876 * 359.97438 * 25 24 23 27 27 C 1.38186 * 119.16214 * 0.02562 * 26 25 24 28 28 N 1.31865 * 119.61599 * 304.72297 * 23 4 2 29 29 H 1.09005 * 109.47260 * 56.53368 * 1 2 3 30 30 H 1.08994 * 109.47283 * 176.54038 * 1 2 3 31 31 H 1.09002 * 109.46866 * 296.53824 * 1 2 3 32 32 H 1.09000 * 109.47118 * 240.00895 * 2 1 3 33 33 H 1.08999 * 109.47256 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46926 * 300.00512 * 3 2 1 35 35 H 1.09005 * 109.46719 * 59.99795 * 3 2 1 36 36 H 0.97007 * 119.99749 * 277.39081 * 6 4 2 37 37 H 1.09002 * 109.47579 * 269.99926 * 11 10 7 38 38 H 1.08995 * 109.47301 * 30.00519 * 11 10 7 39 39 H 1.09004 * 109.46836 * 150.00223 * 11 10 7 40 40 H 1.09006 * 109.47098 * 299.99431 * 14 12 10 41 41 H 1.09005 * 109.46837 * 180.02562 * 14 12 10 42 42 H 1.08993 * 109.47591 * 59.99856 * 14 12 10 43 43 H 0.96996 * 120.00214 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.41800 * 359.97438 * 24 23 4 45 45 H 1.07992 * 120.79126 * 180.02562 * 25 24 23 46 46 H 1.07988 * 120.41953 * 180.02562 * 26 25 24 47 47 H 1.07996 * 119.61837 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1242 -0.6245 1.3074 6 7 1.6796 -2.1393 1.1757 7 16 2.7849 -3.2477 0.6353 8 8 3.3293 -2.7186 -0.5659 9 8 2.1492 -4.5165 0.7078 10 7 4.0228 -3.2814 1.7348 11 6 5.1694 -2.3838 1.5745 12 6 3.9714 -4.2090 2.8676 13 1 3.0506 -4.7902 2.8197 14 6 4.0071 -3.4176 4.1766 15 6 5.1562 -5.1384 2.8099 16 1 5.8754 -5.0477 2.0094 17 6 5.3221 -6.1048 3.7794 18 7 4.4466 -6.2150 4.7546 19 14 6.7903 -7.2574 3.7076 20 1 8.0449 -6.4654 3.7722 21 1 6.7388 -8.1966 4.8566 22 1 6.7548 -8.0258 2.4374 23 6 1.4143 -0.1068 2.4747 24 6 0.7277 -0.9092 3.3665 25 6 0.1563 -0.3340 4.4911 26 6 0.2979 1.0328 4.6777 27 6 0.9985 1.7709 3.7429 28 7 1.5328 1.1893 2.6867 29 1 -0.3634 0.5667 -0.8573 30 1 -0.3633 -1.0257 -0.0620 31 1 -0.3633 0.4592 0.9194 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.7934 -2.4290 1.4434 37 1 5.9340 -2.8748 0.9723 38 1 4.8478 -1.4686 1.0775 39 1 5.5798 -2.1401 2.5545 40 1 4.9278 -2.8361 4.2247 41 1 3.9693 -4.1078 5.0195 42 1 3.1502 -2.7453 4.2183 43 1 4.5631 -6.8951 5.4364 44 1 0.6376 -1.9707 3.1895 45 1 -0.3856 -0.9362 5.2053 46 1 -0.1338 1.5142 5.5426 47 1 1.1130 2.8359 3.8807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800914308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:40 Heat of formation + Delta-G solvation = -55.319954 kcal Electronic energy + Delta-G solvation = -29891.158296 eV Core-core repulsion = 26007.291049 eV Total energy + Delta-G solvation = -3883.867246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.48672 -38.53786 -38.10087 -37.85111 -36.91002 -34.54807 -34.35825 -33.07281 -31.75334 -30.94083 -28.02256 -27.30863 -27.17960 -26.90444 -24.33326 -23.46810 -22.62234 -21.00280 -20.32535 -19.07703 -18.57368 -18.51749 -17.88844 -17.08617 -16.89255 -16.64402 -16.30407 -16.03159 -15.90688 -15.21115 -15.10237 -14.84101 -14.60032 -14.37305 -14.27743 -13.91495 -13.76386 -13.45170 -13.21605 -13.18542 -13.16003 -13.06505 -12.94721 -12.80425 -12.79121 -12.60778 -12.56336 -12.40581 -12.25180 -12.16215 -11.91199 -11.80990 -11.67621 -11.17202 -10.82844 -10.64221 -10.49415 -10.04905 -9.81005 -9.69178 -8.11574 -6.24627 -0.38455 0.21808 0.41441 1.43166 1.44944 1.51816 1.94076 2.43143 2.58153 2.88557 3.16827 3.20818 3.41128 3.73259 3.78507 3.95797 4.06774 4.13433 4.22147 4.28154 4.32067 4.37004 4.62012 4.69564 4.73993 4.78314 4.81447 4.87082 4.94193 4.98722 5.02292 5.08981 5.12374 5.14780 5.16201 5.24382 5.31204 5.36465 5.45184 5.60410 5.66007 5.67328 5.86248 5.94197 5.96879 6.14734 6.30170 6.82081 7.06371 7.44055 8.92335 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.004237 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.286513 B = 6607.024637 C = 7638.916136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.153 4.153 4 C 0.210 3.790 5 H 0.096 0.904 6 N -1.113 6.113 7 S 2.796 3.204 8 O -1.001 7.001 9 O -1.012 7.012 10 N -0.995 5.995 11 C 0.102 3.898 12 C 0.275 3.725 13 H 0.027 0.973 14 C -0.131 4.131 15 C -0.540 4.540 16 H 0.055 0.945 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.279 1.279 23 C 0.122 3.878 24 C -0.180 4.180 25 C -0.077 4.077 26 C -0.171 4.171 27 C 0.092 3.908 28 N -0.483 5.483 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.421 0.579 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.130 0.870 45 H 0.151 0.849 46 H 0.163 0.837 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 18.387 -0.662 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.210 4.210 4 C 0.102 3.898 5 H 0.113 0.887 6 N -0.875 5.875 7 S 2.805 3.195 8 O -0.984 6.984 9 O -0.997 6.997 10 N -0.837 5.837 11 C -0.044 4.044 12 C 0.171 3.829 13 H 0.045 0.955 14 C -0.191 4.191 15 C -0.579 4.579 16 H 0.074 0.926 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.016 4.016 24 C -0.200 4.200 25 C -0.102 4.102 26 C -0.190 4.190 27 C -0.065 4.065 28 N -0.193 5.193 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.258 0.742 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.148 0.852 45 H 0.169 0.831 46 H 0.181 0.819 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.657 18.304 -1.968 20.343 hybrid contribution -0.012 -1.670 1.106 2.003 sum -8.669 16.634 -0.862 18.777 Atomic orbital electron populations 1.21767 0.94260 1.01615 1.01995 1.21509 0.97187 0.97712 0.95926 1.22065 1.00782 0.94380 1.03817 1.19576 0.99064 0.78489 0.92649 0.88654 1.56025 1.28711 1.18152 1.84599 1.01287 0.72763 0.72125 0.73316 1.93532 1.79324 1.80793 1.44780 1.93561 1.76872 1.41724 1.87499 1.57578 1.33328 1.49590 1.43236 1.21387 0.88655 0.91661 1.02667 1.18388 0.96550 0.85882 0.82058 0.95514 1.21878 0.98434 0.98675 1.00074 1.21618 1.09778 1.16243 1.10279 0.92633 1.25597 0.98907 0.98501 0.95006 1.69954 1.36568 1.34744 1.13836 0.85691 0.80174 0.78862 0.77384 1.19248 1.20649 1.20520 1.20950 0.95450 0.90181 0.95008 1.22023 1.00054 1.01631 0.96263 1.21907 0.96228 0.95996 0.96110 1.22466 1.00455 0.94436 1.01661 1.23314 0.92589 1.01732 0.88846 1.67358 1.20076 1.10497 1.21409 0.91529 0.93021 0.92937 0.91128 0.93285 0.92369 0.88628 0.74221 0.93624 0.90620 0.90441 0.94231 0.91419 0.94852 0.92638 0.85238 0.83123 0.81936 0.79865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.79 71.98 0.63 -2.29 16 2 C -0.10 -2.47 2.89 -10.79 -0.03 -2.50 16 3 C -0.15 -3.22 8.85 71.98 0.64 -2.59 16 4 C 0.21 5.50 2.50 44.24 0.11 5.61 16 5 H 0.10 2.60 6.09 -2.39 -0.01 2.58 16 6 N -1.11 -32.39 4.43 -172.53 -0.76 -33.16 16 7 S 2.80 108.41 5.99 -56.49 -0.34 108.07 16 8 O -1.00 -40.49 16.67 -128.00 -2.13 -42.62 16 9 O -1.01 -47.53 16.70 -128.00 -2.14 -49.66 16 10 N -1.00 -40.69 3.12 -520.43 -1.62 -42.31 16 11 C 0.10 3.55 9.36 127.77 1.20 4.74 16 12 C 0.28 13.41 2.62 44.25 0.12 13.52 16 13 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 14 C -0.13 -5.82 8.95 71.98 0.64 -5.17 16 15 C -0.54 -29.16 8.37 25.60 0.21 -28.95 16 16 H 0.06 2.99 7.65 -2.91 -0.02 2.97 16 17 C 0.02 1.08 5.30 84.66 0.45 1.53 16 18 N -0.91 -50.71 11.32 21.45 0.24 -50.47 16 19 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C 0.12 2.93 4.55 42.55 0.19 3.12 16 24 C -0.18 -4.15 9.20 22.36 0.21 -3.94 16 25 C -0.08 -1.40 10.18 22.47 0.23 -1.17 16 26 C -0.17 -2.52 10.11 22.36 0.23 -2.29 16 27 C 0.09 1.50 11.18 84.67 0.95 2.45 16 28 N -0.48 -10.43 7.09 -183.89 -1.30 -11.74 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.05 1.09 7.78 -2.39 -0.02 1.07 16 31 H 0.05 1.09 6.89 -2.39 -0.02 1.08 16 32 H 0.07 1.92 7.85 -2.39 -0.02 1.90 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 2.00 5.24 -2.38 -0.01 1.99 16 36 H 0.42 10.78 7.04 -96.74 -0.68 10.10 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.19 6.13 -2.39 -0.01 2.17 16 39 H 0.08 2.61 6.43 -2.38 -0.02 2.59 16 40 H 0.04 1.66 6.66 -2.38 -0.02 1.64 16 41 H 0.07 3.37 6.07 -2.38 -0.01 3.36 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.13 3.10 6.19 -2.91 -0.02 3.08 16 45 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.16 1.35 8.06 -2.92 -0.02 1.33 16 47 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -68.65 379.15 0.04 -68.61 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.30 Total: 25.94 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 5.77 Total: -17.92 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -3.45 Total: -137.67 kcal Atomic # 8 Polarization: -88.01 SS G_CDS: -4.27 Total: -92.28 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 108.41 SS G_CDS: -0.34 Total: 108.07 kcal Total: -68.65 0.04 -68.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.292 kcal (2) G-P(sol) polarization free energy of solvation -68.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds