Wall clock time and date at job start Wed Apr 1 2020 00:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46804 * 2 1 4 4 C 1.53003 * 109.47174 * 119.99284 * 2 1 3 5 5 H 1.09002 * 109.47273 * 300.24199 * 4 2 1 6 6 N 1.46504 * 109.46668 * 60.23464 * 4 2 1 7 7 S 1.65594 * 119.99964 * 214.65341 * 6 4 2 8 8 O 1.42099 * 106.40526 * 312.32692 * 7 6 4 9 9 O 1.42105 * 106.40000 * 179.40664 * 7 6 4 10 10 N 1.65603 * 107.21706 * 65.87013 * 7 6 4 11 11 C 1.46493 * 120.00145 * 270.29551 * 10 7 6 12 12 C 1.46502 * 119.99763 * 90.29602 * 10 7 6 13 13 H 1.09001 * 109.47560 * 358.92493 * 12 10 7 14 14 C 1.52998 * 109.46846 * 238.92962 * 12 10 7 15 15 C 1.50700 * 109.47090 * 118.93016 * 12 10 7 16 16 H 1.07996 * 120.00112 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99950 * 179.97438 * 15 12 10 18 18 N 1.31515 * 119.99753 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00116 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47277 * 89.99803 * 19 17 15 21 21 H 1.48504 * 109.47122 * 210.00130 * 19 17 15 22 22 H 1.48500 * 109.47110 * 330.00078 * 19 17 15 23 23 C 1.50697 * 109.47198 * 180.23700 * 4 2 1 24 24 C 1.38224 * 119.61823 * 124.73296 * 23 4 2 25 25 C 1.38624 * 119.16406 * 179.75655 * 24 23 4 26 26 C 1.38682 * 118.41688 * 0.50417 * 25 24 23 27 27 C 1.38181 * 119.16131 * 359.73486 * 26 25 24 28 28 N 1.31850 * 119.61843 * 305.00415 * 23 4 2 29 29 H 1.09004 * 109.47663 * 302.62685 * 1 2 3 30 30 H 1.08997 * 109.47440 * 62.63258 * 1 2 3 31 31 H 1.09005 * 109.47343 * 182.62930 * 1 2 3 32 32 H 1.08992 * 109.47484 * 240.00047 * 2 1 3 33 33 H 1.08992 * 109.47400 * 179.97438 * 3 2 1 34 34 H 1.09008 * 109.47065 * 299.99858 * 3 2 1 35 35 H 1.08998 * 109.47342 * 59.99458 * 3 2 1 36 36 H 0.97002 * 119.99488 * 34.66873 * 6 4 2 37 37 H 1.09001 * 109.46847 * 274.80636 * 11 10 7 38 38 H 1.09003 * 109.46904 * 34.80245 * 11 10 7 39 39 H 1.08999 * 109.47321 * 154.80201 * 11 10 7 40 40 H 1.09001 * 109.47200 * 174.27762 * 14 12 10 41 41 H 1.09000 * 109.47750 * 54.27619 * 14 12 10 42 42 H 1.08998 * 109.47411 * 294.27129 * 14 12 10 43 43 H 0.97011 * 119.99555 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.41778 * 359.97438 * 24 23 4 45 45 H 1.08003 * 120.79433 * 180.26416 * 25 24 23 46 46 H 1.08000 * 120.41770 * 179.70993 * 26 25 24 47 47 H 1.07994 * 119.61567 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6731 -0.2097 2.1393 6 7 1.5562 -2.1040 1.2466 7 16 1.1702 -2.8489 2.6742 8 8 2.2511 -2.5993 3.5623 9 8 0.7271 -4.1565 2.3375 10 7 -0.1424 -2.0573 3.3010 11 6 0.0505 -0.9127 4.1946 12 6 -1.4965 -2.5018 2.9617 13 1 -1.4404 -3.3472 2.2760 14 6 -2.2578 -1.3542 2.2950 15 6 -2.2172 -2.9203 4.2173 16 1 -1.7166 -2.8615 5.1724 17 6 -3.5158 -3.3782 4.1466 18 7 -4.1253 -3.4502 2.9835 19 14 -4.4090 -3.8976 5.7029 20 1 -5.1160 -2.7272 6.2820 21 1 -5.3944 -4.9597 5.3770 22 1 -3.4265 -4.4190 6.6868 23 6 3.5470 -0.7160 1.2523 24 6 4.2262 -0.2022 2.3409 25 6 5.6125 -0.2068 2.3359 26 6 6.2667 -0.7209 1.2264 27 6 5.5203 -1.2129 0.1727 28 7 4.2022 -1.1969 0.2141 29 1 -0.3634 0.5541 0.8655 30 1 -0.3634 0.4724 -0.9126 31 1 -0.3634 -1.0266 0.0471 32 1 1.8933 -0.5138 -0.8899 33 1 3.1298 1.4426 0.0005 34 1 1.6765 1.9564 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.4623 -2.5832 0.4085 37 1 0.1885 -1.2682 5.2158 38 1 0.9320 -0.3527 3.8826 39 1 -0.8255 -0.2656 4.1505 40 1 -3.2280 -1.7131 1.9513 41 1 -1.6853 -0.9839 1.4447 42 1 -2.4027 -0.5481 3.0142 43 1 -5.0391 -3.7721 2.9339 44 1 3.6838 0.1947 3.1864 45 1 6.1698 0.1841 3.1744 46 1 7.3458 -0.7360 1.1863 47 1 6.0222 -1.6145 -0.6951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800914310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:44 Heat of formation + Delta-G solvation = -45.802651 kcal Electronic energy + Delta-G solvation = -29836.941252 eV Core-core repulsion = 25953.486707 eV Total energy + Delta-G solvation = -3883.454545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.43409 -37.35019 -36.58393 -36.11257 -35.18356 -32.85069 -32.56733 -32.43402 -31.23510 -29.13121 -27.07599 -25.99639 -25.57445 -25.07626 -23.64050 -22.36246 -20.85999 -20.11219 -18.75113 -17.31720 -17.19377 -16.74862 -16.49495 -16.16705 -15.82212 -15.65454 -15.05193 -14.45958 -14.37424 -14.03191 -13.60336 -13.48072 -13.31155 -13.19535 -12.80941 -12.72632 -12.70175 -12.15439 -12.05982 -12.02303 -11.71390 -11.61651 -11.46084 -11.31038 -11.25946 -11.08715 -10.99768 -10.81751 -10.77559 -10.57972 -10.41179 -10.21657 -10.02899 -9.90613 -9.73065 -9.22170 -9.14901 -9.04068 -8.44283 -7.96646 -6.05573 -4.11378 0.98510 1.23250 1.29865 3.29182 3.36443 3.40373 3.47450 3.78985 4.15736 4.20732 4.41984 4.47574 4.75556 4.83808 4.92541 4.97766 5.02036 5.12634 5.18547 5.25191 5.28056 5.48439 5.58958 5.61596 5.65747 5.74309 5.84262 5.92749 5.97853 6.04940 6.09832 6.12419 6.16466 6.31894 6.41867 6.47728 6.62636 6.63461 6.83218 6.84305 7.03949 7.20237 7.50981 7.66175 7.81920 7.96324 8.05670 8.29544 8.90567 9.54223 11.00344 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.003778 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.819964 B = 7409.897892 C = 8005.194316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.144 4.144 4 C 0.215 3.785 5 H 0.095 0.905 6 N -1.118 6.118 7 S 2.775 3.225 8 O -0.994 6.994 9 O -0.974 6.974 10 N -0.988 5.988 11 C 0.109 3.891 12 C 0.269 3.731 13 H 0.058 0.942 14 C -0.152 4.152 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.122 3.878 24 C -0.148 4.148 25 C -0.076 4.076 26 C -0.178 4.178 27 C 0.093 3.907 28 N -0.468 5.468 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.416 0.584 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.023 0.977 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.131 0.869 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.546 11.417 -6.183 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.202 4.202 4 C 0.106 3.894 5 H 0.113 0.887 6 N -0.875 5.875 7 S 2.784 3.216 8 O -0.977 6.977 9 O -0.957 6.957 10 N -0.832 5.832 11 C -0.037 4.037 12 C 0.167 3.833 13 H 0.076 0.924 14 C -0.212 4.212 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.018 4.018 24 C -0.168 4.168 25 C -0.102 4.102 26 C -0.198 4.198 27 C -0.064 4.064 28 N -0.177 5.177 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.149 0.851 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.358 10.351 -6.398 19.594 hybrid contribution -0.178 0.104 1.144 1.163 sum 15.180 10.455 -5.253 19.166 Atomic orbital electron populations 1.21982 0.93700 1.03201 1.01887 1.21331 0.96628 0.95877 0.97399 1.21801 1.00703 0.95606 1.02071 1.19619 0.86535 0.82842 1.00364 0.88684 1.56284 1.81621 1.22770 1.26788 1.02096 0.73056 0.73430 0.73004 1.93541 1.54096 1.86134 1.63899 1.93617 1.81987 1.36150 1.83994 1.57714 1.21801 1.44831 1.58810 1.21189 1.00376 0.88406 0.93765 1.18722 0.75320 0.93105 0.96199 0.92450 1.22234 1.02726 0.98473 0.97723 1.21342 0.97787 1.43378 0.93499 0.92046 1.24892 0.97325 0.95326 0.96274 1.69875 1.12888 1.46662 1.23401 0.86520 0.79454 0.78286 0.83284 1.20702 1.21159 1.19881 1.21623 0.96939 0.93483 0.89752 1.21995 0.95090 1.00556 0.99202 1.21554 0.94396 0.96470 0.97814 1.22114 1.01276 1.01080 0.95322 1.22726 0.89630 0.96103 0.97962 1.67398 1.09559 1.14269 1.26473 0.92089 0.92635 0.91286 0.89572 0.93052 0.92250 0.92480 0.75070 0.93297 0.93968 0.90520 0.89394 0.95860 0.94804 0.92771 0.84689 0.84906 0.85088 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.00 37.16 0.30 -1.49 16 2 C -0.09 -1.05 2.48 -90.62 -0.22 -1.27 16 3 C -0.14 -1.40 8.94 37.16 0.33 -1.06 16 4 C 0.22 2.83 2.08 -69.08 -0.14 2.69 16 5 H 0.10 1.19 5.76 -51.93 -0.30 0.89 16 6 N -1.12 -17.20 4.71 -5.88 -0.03 -17.23 16 7 S 2.78 54.73 6.02 -107.50 -0.65 54.08 16 8 O -0.99 -20.46 17.06 -57.17 -0.98 -21.43 16 9 O -0.97 -23.23 16.70 -57.17 -0.96 -24.19 16 10 N -0.99 -19.82 3.12 -115.86 -0.36 -20.19 16 11 C 0.11 1.84 9.38 59.84 0.56 2.40 16 12 C 0.27 6.41 2.61 -69.08 -0.18 6.23 16 13 H 0.06 1.54 6.92 -51.93 -0.36 1.18 16 14 C -0.15 -3.27 8.73 37.16 0.32 -2.95 16 15 C -0.52 -13.89 8.38 -34.44 -0.29 -14.18 16 16 H 0.06 1.64 7.68 -52.49 -0.40 1.24 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -24.58 11.38 55.43 0.63 -23.95 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 1.62 4.48 -82.59 -0.37 1.25 16 24 C -0.15 -1.81 9.71 -39.44 -0.38 -2.19 16 25 C -0.08 -0.79 10.18 -39.28 -0.40 -1.19 16 26 C -0.18 -1.70 10.11 -39.44 -0.40 -2.10 16 27 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 28 N -0.47 -6.15 9.88 -9.48 -0.09 -6.24 16 29 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.93 6.40 -51.93 -0.33 0.60 16 32 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 33 H 0.05 0.52 7.21 -51.93 -0.37 0.14 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.42 5.93 8.83 -34.47 -0.30 5.62 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.57 6.15 -51.93 -0.32 0.25 16 39 H 0.08 1.25 6.49 -51.93 -0.34 0.91 16 40 H 0.09 2.13 6.24 -51.93 -0.32 1.81 16 41 H 0.02 0.42 5.07 -51.93 -0.26 0.15 16 42 H 0.03 0.70 6.86 -51.93 -0.36 0.34 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.14 1.49 7.95 -52.49 -0.42 1.07 16 45 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -32.96 383.55 -9.83 -42.79 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.00 Total: 5.87 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.16 Total: -11.40 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: 0.15 Total: -67.61 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.93 Total: -45.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -0.65 Total: 54.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.96 -9.83 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800914310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.014 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds