Wall clock time and date at job start Wed Apr 1 2020 01:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.46931 * 2 1 4 4 C 1.34228 * 116.99918 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99659 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99999 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.49783 * 300.06145 * 6 4 3 8 8 C 1.53045 * 109.49632 * 179.97438 * 6 4 3 9 9 C 1.53039 * 109.53694 * 178.65052 * 8 6 4 10 10 C 1.53196 * 109.33748 * 61.35198 * 9 8 6 11 11 N 1.46931 * 108.77131 * 305.41286 * 10 9 8 12 12 C 1.34775 * 120.60689 * 233.57988 * 11 10 9 13 13 O 1.21283 * 120.00376 * 179.97438 * 12 11 10 14 14 C 1.50706 * 119.99836 * 359.97438 * 12 11 10 15 15 O 1.45198 * 109.47286 * 180.02562 * 14 12 11 16 16 C 1.34229 * 116.99961 * 180.02562 * 15 14 12 17 17 O 1.20819 * 120.00369 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99586 * 180.02562 * 16 15 14 19 19 C 1.53006 * 109.46679 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46958 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00484 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00266 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99526 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46805 * 90.00171 * 24 22 20 26 26 H 1.48497 * 109.47183 * 210.00216 * 24 22 20 27 27 H 1.48497 * 109.47227 * 330.00887 * 24 22 20 28 28 C 1.46928 * 118.76737 * 53.55408 * 11 10 9 29 29 H 1.08992 * 109.47092 * 300.00282 * 1 2 3 30 30 H 1.09000 * 109.46737 * 60.00435 * 1 2 3 31 31 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47092 * 239.99717 * 2 1 3 33 33 H 1.09000 * 109.46737 * 119.99565 * 2 1 3 34 34 H 1.09001 * 109.45732 * 58.63357 * 8 6 4 35 35 H 1.08995 * 109.46248 * 298.67067 * 8 6 4 36 36 H 1.09002 * 109.49756 * 181.31922 * 9 8 6 37 37 H 1.09000 * 109.49883 * 301.38665 * 9 8 6 38 38 H 1.08996 * 109.58760 * 65.17188 * 10 9 8 39 39 H 1.09001 * 109.58519 * 185.59185 * 10 9 8 40 40 H 1.09005 * 109.47141 * 300.00250 * 14 12 11 41 41 H 1.09005 * 109.46868 * 60.00194 * 14 12 11 42 42 H 1.09003 * 109.47060 * 299.99214 * 18 16 15 43 43 H 1.08991 * 109.47692 * 60.00071 * 18 16 15 44 44 H 1.09003 * 109.46851 * 299.99487 * 19 18 16 45 45 H 1.09002 * 109.47618 * 59.99695 * 19 18 16 46 46 H 0.96998 * 120.00022 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.58597 * 186.62384 * 28 11 10 48 48 H 1.09001 * 109.69741 * 66.27202 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5838 3.4701 -0.8904 8 6 5.4491 2.8581 -0.0010 9 6 6.0350 4.2714 -0.0356 10 6 5.5904 5.0356 1.2155 11 7 4.1243 4.9914 1.3005 12 6 3.4093 6.1275 1.4214 13 8 2.1995 6.0783 1.4902 14 6 4.1133 7.4591 1.4710 15 8 3.1318 8.5209 1.6033 16 6 3.5983 9.7781 1.6615 17 8 4.7873 9.9846 1.6044 18 6 2.6389 10.9321 1.7994 19 6 3.4233 12.2451 1.8428 20 6 2.4640 13.3990 1.9812 21 1 1.4011 13.2145 2.0327 22 6 2.9432 14.6904 2.0423 23 7 4.2374 14.9151 1.9791 24 14 1.7540 16.1208 2.2132 25 1 1.5228 16.4029 3.6527 26 1 2.3292 17.3236 1.5593 27 1 0.4647 15.7730 1.5637 28 6 3.4522 3.6858 1.2507 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.7840 2.3046 -0.8783 35 1 5.7861 2.3473 0.9009 36 1 7.1232 4.2137 -0.0592 37 1 5.6789 4.7912 -0.9251 38 1 6.0216 4.5690 2.1011 39 1 5.9220 6.0718 1.1478 40 1 4.7893 7.4811 2.3259 41 1 4.6834 7.6031 0.5532 42 1 1.9587 10.9428 0.9477 43 1 2.0664 10.8208 2.7202 44 1 4.1032 12.2341 2.6947 45 1 3.9961 12.3567 0.9222 46 1 4.5746 15.8236 2.0224 47 1 2.3729 3.8319 1.2067 48 1 3.7067 3.1075 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:19 Heat of formation + Delta-G solvation = -221.868204 kcal Electronic energy + Delta-G solvation = -29274.504761 eV Core-core repulsion = 24908.369818 eV Total energy + Delta-G solvation = -4366.134943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33377 -40.51046 -39.73213 -37.88541 -36.94747 -36.06718 -33.66664 -33.58818 -32.49342 -31.72499 -31.20390 -29.09529 -26.11897 -25.82521 -24.90718 -23.52829 -22.36815 -22.10680 -20.74390 -19.91380 -19.55516 -18.18092 -17.76832 -17.28524 -17.10996 -16.71330 -16.60483 -16.46188 -15.92234 -15.48475 -15.16253 -14.97769 -14.57601 -14.46098 -14.22269 -14.04035 -13.85696 -13.66701 -13.23286 -13.14042 -13.10485 -12.47417 -12.40875 -12.26071 -12.25587 -12.12674 -12.00509 -11.56499 -11.55051 -11.22774 -11.21929 -11.00259 -10.96149 -10.90634 -10.64875 -10.59848 -10.08811 -10.05690 -9.96742 -9.58299 -9.18679 -9.15881 -8.38091 -6.02156 -4.06772 1.64775 2.04954 2.26677 2.31339 2.73447 3.19098 3.32158 3.38468 3.41951 3.94698 4.05831 4.19942 4.26869 4.38615 4.44655 4.45427 4.47732 4.52530 4.64700 4.78150 4.88266 4.91588 4.96297 5.04284 5.17120 5.21941 5.25265 5.29267 5.31503 5.33548 5.40386 5.46175 5.53240 5.54055 5.73068 5.92486 6.01022 6.12091 6.19574 6.53923 6.84320 6.88410 7.25705 7.65468 7.71651 7.80343 7.96974 8.19272 8.36489 9.00161 9.57377 11.08852 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.001731 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.401088 B =16167.948791 C =17233.054008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.504 6.504 6 C -0.097 4.097 7 H 0.116 0.884 8 C -0.104 4.104 9 C -0.135 4.135 10 C 0.098 3.902 11 N -0.614 5.614 12 C 0.522 3.478 13 O -0.509 6.509 14 C 0.047 3.953 15 O -0.342 6.342 16 C 0.459 3.541 17 O -0.506 6.506 18 C -0.102 4.102 19 C 0.033 3.967 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.126 3.874 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.262 0.738 47 H 0.109 0.891 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -31.691 -4.270 31.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.271 6.271 4 C 0.314 3.686 5 O -0.392 6.392 6 C -0.117 4.117 7 H 0.134 0.866 8 C -0.142 4.142 9 C -0.174 4.174 10 C -0.024 4.024 11 N -0.350 5.350 12 C 0.309 3.691 13 O -0.382 6.382 14 C -0.031 4.031 15 O -0.259 6.259 16 C 0.303 3.697 17 O -0.392 6.392 18 C -0.139 4.139 19 C -0.004 4.004 20 C -0.567 4.567 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C 0.003 3.997 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.127 0.873 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.599 -31.821 -4.242 32.108 hybrid contribution -0.210 0.479 0.000 0.523 sum 0.390 -31.342 -4.242 31.630 Atomic orbital electron populations 1.21824 0.92331 1.03088 1.03901 1.23077 0.95660 0.79857 1.02615 1.86550 1.24224 1.32705 1.83580 1.23476 0.80746 0.92171 0.72252 1.90676 1.60500 1.42913 1.45081 1.21510 0.97470 0.90130 1.02558 0.86639 1.21456 0.91066 0.97374 1.04314 1.21958 1.01733 0.95228 0.98434 1.21946 0.79058 1.02539 0.98894 1.47955 1.07268 1.05453 1.74369 1.20244 0.87672 0.84885 0.76299 1.90759 1.13564 1.86526 1.47362 1.22562 0.91218 0.84763 1.04529 1.86669 1.39171 1.15776 1.84317 1.24956 0.90429 0.82759 0.71544 1.90634 1.18187 1.84897 1.45481 1.21804 0.97471 0.90484 1.04179 1.19037 0.95109 0.87369 0.98892 1.21161 0.93231 0.91026 1.51251 0.92231 1.25016 0.95154 0.99019 0.95121 1.69989 1.12116 1.20876 1.49843 0.86531 0.81066 0.81797 0.78221 1.20606 1.21202 1.19774 1.21416 1.00072 0.82808 0.95422 0.91198 0.91308 0.90133 0.91178 0.91110 0.90316 0.90484 0.89353 0.90752 0.90361 0.88875 0.88312 0.88304 0.88683 0.88684 0.95538 0.95529 0.92862 0.87283 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.16 0.38 -0.34 16 2 C 0.06 0.40 6.19 37.16 0.23 0.63 16 3 O -0.35 -3.02 10.15 -39.25 -0.40 -3.41 16 4 C 0.47 4.09 7.26 36.01 0.26 4.35 16 5 O -0.50 -5.43 15.73 -18.75 -0.29 -5.73 16 6 C -0.10 -0.68 2.78 -91.65 -0.25 -0.93 16 7 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.10 -0.61 4.46 -26.69 -0.12 -0.73 16 9 C -0.14 -0.65 6.08 -26.61 -0.16 -0.81 16 10 C 0.10 0.57 6.34 -3.71 -0.02 0.55 16 11 N -0.61 -5.37 2.97 -172.76 -0.51 -5.89 16 12 C 0.52 6.49 7.78 -10.98 -0.09 6.41 16 13 O -0.51 -8.35 15.91 -14.10 -0.22 -8.57 16 14 C 0.05 0.60 4.29 36.01 0.15 0.75 16 15 O -0.34 -5.86 9.75 -45.90 -0.45 -6.30 16 16 C 0.46 8.90 7.96 36.01 0.29 9.19 16 17 O -0.51 -10.89 15.73 -18.74 -0.29 -11.18 16 18 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 19 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 20 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 21 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 24 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.13 1.01 5.65 -3.71 -0.02 0.99 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 33 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 34 H 0.08 0.47 8.07 -51.93 -0.42 0.06 16 35 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.50 5.93 -51.93 -0.31 0.19 16 40 H 0.10 1.10 7.94 -51.93 -0.41 0.69 16 41 H 0.10 1.09 7.68 -51.93 -0.40 0.69 16 42 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 44 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.11 1.07 7.00 -51.93 -0.36 0.70 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -35.97 402.74 -8.21 -44.18 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -7.78 Total: -4.60 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.04 Total: 5.09 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.22 Total: -31.94 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.66 Total: -35.20 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.97 -8.21 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.691 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds