Wall clock time and date at job start Wed Apr 1 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.46931 * 2 1 4 4 C 1.34228 * 116.99918 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99659 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99999 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.49783 * 300.06145 * 6 4 3 8 8 C 1.53045 * 109.49632 * 179.97438 * 6 4 3 9 9 C 1.53039 * 109.53694 * 178.65052 * 8 6 4 10 10 C 1.53196 * 109.33748 * 61.35198 * 9 8 6 11 11 N 1.46931 * 108.77131 * 305.41286 * 10 9 8 12 12 C 1.34775 * 120.60689 * 233.57988 * 11 10 9 13 13 O 1.21283 * 120.00376 * 179.97438 * 12 11 10 14 14 C 1.50706 * 119.99836 * 359.97438 * 12 11 10 15 15 O 1.45198 * 109.47286 * 180.02562 * 14 12 11 16 16 C 1.34229 * 116.99961 * 180.02562 * 15 14 12 17 17 O 1.20819 * 120.00369 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99586 * 180.02562 * 16 15 14 19 19 C 1.53006 * 109.46679 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46958 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00484 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00266 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99526 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46805 * 90.00171 * 24 22 20 26 26 H 1.48497 * 109.47183 * 210.00216 * 24 22 20 27 27 H 1.48497 * 109.47227 * 330.00887 * 24 22 20 28 28 C 1.46928 * 118.76737 * 53.55408 * 11 10 9 29 29 H 1.08992 * 109.47092 * 300.00282 * 1 2 3 30 30 H 1.09000 * 109.46737 * 60.00435 * 1 2 3 31 31 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47092 * 239.99717 * 2 1 3 33 33 H 1.09000 * 109.46737 * 119.99565 * 2 1 3 34 34 H 1.09001 * 109.45732 * 58.63357 * 8 6 4 35 35 H 1.08995 * 109.46248 * 298.67067 * 8 6 4 36 36 H 1.09002 * 109.49756 * 181.31922 * 9 8 6 37 37 H 1.09000 * 109.49883 * 301.38665 * 9 8 6 38 38 H 1.08996 * 109.58760 * 65.17188 * 10 9 8 39 39 H 1.09001 * 109.58519 * 185.59185 * 10 9 8 40 40 H 1.09005 * 109.47141 * 300.00250 * 14 12 11 41 41 H 1.09005 * 109.46868 * 60.00194 * 14 12 11 42 42 H 1.09003 * 109.47060 * 299.99214 * 18 16 15 43 43 H 1.08991 * 109.47692 * 60.00071 * 18 16 15 44 44 H 1.09003 * 109.46851 * 299.99487 * 19 18 16 45 45 H 1.09002 * 109.47618 * 59.99695 * 19 18 16 46 46 H 0.96998 * 120.00022 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.58597 * 186.62384 * 28 11 10 48 48 H 1.09001 * 109.69741 * 66.27202 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5838 3.4701 -0.8904 8 6 5.4491 2.8581 -0.0010 9 6 6.0350 4.2714 -0.0356 10 6 5.5904 5.0356 1.2155 11 7 4.1243 4.9914 1.3005 12 6 3.4093 6.1275 1.4214 13 8 2.1995 6.0783 1.4902 14 6 4.1133 7.4591 1.4710 15 8 3.1318 8.5209 1.6033 16 6 3.5983 9.7781 1.6615 17 8 4.7873 9.9846 1.6044 18 6 2.6389 10.9321 1.7994 19 6 3.4233 12.2451 1.8428 20 6 2.4640 13.3990 1.9812 21 1 1.4011 13.2145 2.0327 22 6 2.9432 14.6904 2.0423 23 7 4.2374 14.9151 1.9791 24 14 1.7540 16.1208 2.2132 25 1 1.5228 16.4029 3.6527 26 1 2.3292 17.3236 1.5593 27 1 0.4647 15.7730 1.5637 28 6 3.4522 3.6858 1.2507 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.7840 2.3046 -0.8783 35 1 5.7861 2.3473 0.9009 36 1 7.1232 4.2137 -0.0592 37 1 5.6789 4.7912 -0.9251 38 1 6.0216 4.5690 2.1011 39 1 5.9220 6.0718 1.1478 40 1 4.7893 7.4811 2.3259 41 1 4.6834 7.6031 0.5532 42 1 1.9587 10.9428 0.9477 43 1 2.0664 10.8208 2.7202 44 1 4.1032 12.2341 2.6947 45 1 3.9961 12.3567 0.9222 46 1 4.5746 15.8236 2.0224 47 1 2.3729 3.8319 1.2067 48 1 3.7067 3.1075 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:18 Heat of formation + Delta-G solvation = -242.454046 kcal Electronic energy + Delta-G solvation = -29275.397430 eV Core-core repulsion = 24908.369818 eV Total energy + Delta-G solvation = -4367.027612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07859 -41.65363 -40.85422 -38.68581 -37.71429 -37.45700 -35.63376 -34.39296 -33.17173 -33.01070 -32.22865 -30.19997 -27.89195 -26.47306 -25.77809 -24.11069 -23.97814 -22.81213 -21.57290 -21.39308 -20.30137 -19.22813 -18.85838 -18.33574 -18.15620 -17.92351 -17.80446 -17.37679 -17.12410 -16.47670 -16.41691 -16.25957 -15.75942 -15.24890 -15.11127 -14.79849 -14.68008 -14.54868 -14.25563 -14.23212 -13.84625 -13.68652 -13.68071 -13.60463 -13.15503 -12.97340 -12.82185 -12.67536 -12.52152 -12.50504 -12.10340 -12.07286 -12.00170 -11.86968 -11.76414 -11.74802 -11.58961 -11.56672 -11.49320 -11.28187 -10.97822 -10.55570 -9.90376 -8.18514 -6.31490 0.91828 1.18671 1.19378 1.32673 1.45283 1.46739 1.57667 1.59433 2.11807 2.45139 3.15472 3.20408 3.44673 3.56556 3.62735 3.85636 3.93104 3.97742 3.98808 4.01457 4.03521 4.06284 4.09882 4.31555 4.41698 4.46160 4.46793 4.47857 4.63160 4.68106 4.80622 4.81495 4.88376 4.89270 4.98802 5.06482 5.12064 5.23745 5.30431 5.32820 5.41865 5.49171 5.58052 5.82509 6.06764 6.15607 6.59085 6.73418 6.86152 6.90102 7.38374 8.93853 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.001731 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.401088 B =16167.948791 C =17233.054008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.364 6.364 4 C 0.474 3.526 5 O -0.527 6.527 6 C -0.090 4.090 7 H 0.119 0.881 8 C -0.101 4.101 9 C -0.129 4.129 10 C 0.090 3.910 11 N -0.601 5.601 12 C 0.524 3.476 13 O -0.557 6.557 14 C 0.040 3.960 15 O -0.347 6.347 16 C 0.471 3.529 17 O -0.533 6.533 18 C -0.096 4.096 19 C 0.039 3.961 20 C -0.546 4.546 21 H 0.074 0.926 22 C -0.001 4.001 23 N -0.933 5.933 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.259 1.259 28 C 0.127 3.873 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.113 0.887 44 H -0.006 1.006 45 H -0.005 1.005 46 H 0.264 0.736 47 H 0.090 0.910 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 -32.480 -4.316 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.281 6.281 4 C 0.317 3.683 5 O -0.416 6.416 6 C -0.110 4.110 7 H 0.137 0.863 8 C -0.138 4.138 9 C -0.166 4.166 10 C -0.031 4.031 11 N -0.336 5.336 12 C 0.312 3.688 13 O -0.435 6.435 14 C -0.037 4.037 15 O -0.263 6.263 16 C 0.316 3.684 17 O -0.422 6.422 18 C -0.133 4.133 19 C 0.002 3.998 20 C -0.584 4.584 21 H 0.093 0.907 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.796 3.204 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.183 1.183 28 C 0.004 3.996 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.013 0.987 45 H 0.013 0.987 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.150 -32.664 -4.294 32.946 hybrid contribution -0.016 0.561 0.002 0.561 sum 0.134 -32.103 -4.292 32.389 Atomic orbital electron populations 1.21843 0.90953 1.04353 1.03563 1.23297 0.96797 0.79008 1.02815 1.86560 1.24216 1.33983 1.83310 1.23732 0.80649 0.92454 0.71452 1.90663 1.60926 1.43719 1.46279 1.21507 0.98411 0.89049 1.02026 0.86335 1.21455 0.89847 0.98142 1.04389 1.21943 1.02939 0.94088 0.97669 1.22271 0.76877 1.03580 1.00408 1.47977 1.08529 1.04606 1.72478 1.20193 0.87084 0.85525 0.76019 1.90743 1.15440 1.87163 1.50111 1.22939 0.90725 0.83528 1.06463 1.86597 1.40404 1.15579 1.83728 1.24470 0.89487 0.83442 0.70984 1.90625 1.19134 1.85495 1.46914 1.21537 0.97193 0.88584 1.05996 1.18807 0.94725 0.90434 0.95821 1.21644 0.94211 0.91798 1.50702 0.90737 1.26040 0.96942 1.02353 0.94609 1.70139 1.14413 1.21664 1.51056 0.85343 0.78888 0.77663 0.78501 1.19779 1.21060 1.18262 1.21422 0.99055 0.82569 0.96552 0.91583 0.91535 0.88074 0.90970 0.90939 0.90316 0.90381 0.87186 0.90916 0.88436 0.88111 0.86400 0.86302 0.86839 0.86850 0.98732 0.98697 0.92741 0.89201 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.05 0.68 6.19 71.98 0.45 1.12 16 3 O -0.36 -6.14 10.15 -51.40 -0.52 -6.66 16 4 C 0.47 7.97 7.26 71.24 0.52 8.49 16 5 O -0.53 -11.04 15.73 21.96 0.35 -10.70 16 6 C -0.09 -1.17 2.78 -11.46 -0.03 -1.20 16 7 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 8 C -0.10 -0.98 4.46 30.62 0.14 -0.84 16 9 C -0.13 -0.89 6.08 30.67 0.19 -0.70 16 10 C 0.09 0.81 6.34 86.36 0.55 1.35 16 11 N -0.60 -9.61 2.97 -818.88 -2.43 -12.04 16 12 C 0.52 12.55 7.78 87.66 0.68 13.23 16 13 O -0.56 -18.30 15.91 15.76 0.25 -18.05 16 14 C 0.04 0.96 4.29 71.24 0.31 1.27 16 15 O -0.35 -11.53 9.75 -45.05 -0.44 -11.97 16 16 C 0.47 18.06 7.96 71.24 0.57 18.62 16 17 O -0.53 -22.99 15.73 21.98 0.35 -22.64 16 18 C -0.10 -3.88 5.75 29.85 0.17 -3.71 16 19 C 0.04 2.10 4.26 29.85 0.13 2.23 16 20 C -0.55 -30.40 9.11 25.60 0.23 -30.17 16 21 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 22 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 23 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 24 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 28 C 0.13 1.93 5.65 86.36 0.49 2.42 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 34 H 0.08 0.81 8.07 -2.39 -0.02 0.79 16 35 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.10 0.80 5.93 -2.39 -0.01 0.78 16 40 H 0.12 2.40 7.94 -2.38 -0.02 2.38 16 41 H 0.12 2.40 7.68 -2.38 -0.02 2.38 16 42 H 0.11 4.17 8.14 -2.39 -0.02 4.16 16 43 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 44 H -0.01 -0.34 8.10 -2.39 -0.02 -0.36 16 45 H -0.01 -0.32 8.10 -2.39 -0.02 -0.34 16 46 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.09 1.78 7.00 -2.39 -0.02 1.76 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -79.00 402.74 6.39 -72.61 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.95 Total: 8.75 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 5.58 Total: 11.95 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -2.15 Total: -68.96 kcal Atomic # 8 Polarization: -70.00 SS G_CDS: -0.02 Total: -70.02 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -79.00 6.39 -72.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.842 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds