Wall clock time and date at job start Wed Apr 1 2020 01:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.46960 * 2 1 4 4 C 1.34227 * 117.00210 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00070 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.49964 * 59.93586 * 6 4 3 8 8 C 1.53043 * 109.49784 * 180.02562 * 6 4 3 9 9 C 1.53033 * 109.53848 * 181.35173 * 8 6 4 10 10 C 1.53195 * 109.30987 * 298.62642 * 9 8 6 11 11 N 1.46926 * 108.77416 * 54.64072 * 10 9 8 12 12 C 1.34776 * 120.63461 * 126.36904 * 11 10 9 13 13 O 1.21277 * 120.00250 * 179.97438 * 12 11 10 14 14 C 1.50703 * 119.99642 * 359.97438 * 12 11 10 15 15 O 1.45205 * 109.46946 * 180.02562 * 14 12 11 16 16 C 1.34225 * 116.99943 * 180.02562 * 15 14 12 17 17 O 1.20825 * 120.00047 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99990 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.47184 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47184 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47046 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46873 * 120.00118 * 24 22 20 27 27 H 1.48497 * 109.47510 * 240.00153 * 24 22 20 28 28 C 1.46923 * 118.73595 * 306.63901 * 11 10 9 29 29 H 1.08997 * 109.46620 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47561 * 299.99870 * 1 2 3 31 31 H 1.09003 * 109.47114 * 59.99871 * 1 2 3 32 32 H 1.08996 * 109.47158 * 240.00487 * 2 1 3 33 33 H 1.08992 * 109.47222 * 119.99685 * 2 1 3 34 34 H 1.08996 * 109.46511 * 61.31945 * 8 6 4 35 35 H 1.09003 * 109.44294 * 301.35821 * 8 6 4 36 36 H 1.09006 * 109.49853 * 178.68312 * 9 8 6 37 37 H 1.09000 * 109.50137 * 58.57947 * 9 8 6 38 38 H 1.08997 * 109.58857 * 294.84863 * 10 9 8 39 39 H 1.08998 * 109.70556 * 174.49197 * 10 9 8 40 40 H 1.09004 * 109.46726 * 60.00438 * 14 12 11 41 41 H 1.08993 * 109.47205 * 300.00242 * 14 12 11 42 42 H 1.09001 * 109.46665 * 60.00348 * 18 16 15 43 43 H 1.08993 * 109.47304 * 299.99904 * 18 16 15 44 44 H 1.09001 * 109.46801 * 300.00442 * 19 18 16 45 45 H 1.09001 * 109.46998 * 60.00038 * 19 18 16 46 46 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.59119 * 173.14223 * 28 11 10 48 48 H 1.08998 * 109.59450 * 293.57088 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5837 3.4702 0.8904 8 6 5.4490 2.8582 0.0010 9 6 6.0348 4.2716 0.0357 10 6 5.5903 5.0350 -1.2159 11 7 4.1242 4.9915 -1.3005 12 6 3.4092 6.1276 -1.4211 13 8 2.1994 6.0783 -1.4905 14 6 4.1131 7.4592 -1.4696 15 8 3.1314 8.5211 -1.6005 16 6 3.5979 9.7784 -1.6587 17 8 4.7870 9.9848 -1.6027 18 6 2.6384 10.9324 -1.7952 19 6 3.4227 12.2455 -1.8376 20 6 2.4632 13.3996 -1.9734 21 1 1.4003 13.2150 -2.0240 22 6 2.9422 14.6911 -2.0320 23 7 4.2366 14.9159 -1.9699 24 14 1.7528 16.1217 -2.1997 25 1 0.3612 15.6055 -2.2473 26 1 1.9038 17.0301 -1.0345 27 1 2.0478 16.8669 -3.4498 28 6 3.4518 3.6863 -1.2452 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 5.7861 2.3473 -0.9008 35 1 5.7837 2.3049 0.8785 36 1 7.1231 4.2139 0.0592 37 1 5.6783 4.7916 0.9248 38 1 6.0215 4.5679 -2.1013 39 1 5.9219 6.0713 -1.1514 40 1 4.7894 7.4817 -2.3242 41 1 4.6828 7.6027 -0.5516 42 1 1.9591 10.9428 -0.9428 43 1 2.0651 10.8214 -2.7155 44 1 3.9958 12.3562 -0.9170 45 1 4.1024 12.2354 -2.6897 46 1 4.5736 15.8245 -2.0116 47 1 2.3728 3.8327 -1.1974 48 1 3.7050 3.1068 -2.1330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:21 Heat of formation + Delta-G solvation = -221.890235 kcal Electronic energy + Delta-G solvation = -29275.937463 eV Core-core repulsion = 24909.801565 eV Total energy + Delta-G solvation = -4366.135898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34333 -40.51171 -39.73452 -37.89308 -36.95019 -36.06701 -33.67432 -33.59033 -32.49907 -31.73290 -31.20495 -29.09639 -26.12176 -25.82838 -24.90743 -23.52880 -22.37113 -22.10882 -20.74722 -19.91467 -19.55467 -18.18439 -17.76980 -17.28757 -17.11231 -16.71478 -16.60443 -16.46449 -15.92421 -15.48433 -15.16840 -14.97568 -14.57987 -14.45794 -14.22384 -14.04542 -13.85669 -13.66872 -13.23435 -13.14513 -13.10608 -12.47513 -12.40977 -12.26415 -12.25634 -12.12703 -12.00392 -11.56497 -11.55303 -11.22523 -11.21809 -11.00353 -10.97970 -10.90790 -10.62974 -10.59906 -10.08798 -10.06347 -9.96673 -9.58701 -9.17212 -9.15981 -8.38599 -6.02448 -4.06992 1.64646 2.04618 2.26863 2.31152 2.73388 3.19068 3.31063 3.38651 3.42864 3.94626 4.05850 4.20066 4.27025 4.38591 4.44549 4.45381 4.47723 4.52541 4.64821 4.78094 4.88243 4.91579 4.96238 5.04203 5.17203 5.21932 5.25301 5.29090 5.31442 5.33362 5.40273 5.46102 5.53204 5.54054 5.72974 5.92351 6.00963 6.12031 6.19518 6.53878 6.84290 6.88422 7.25535 7.65595 7.71508 7.80314 7.96849 8.19177 8.36373 9.00203 9.57273 11.08608 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.001732 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.733671 B =16166.447317 C =17231.317760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.504 6.504 6 C -0.097 4.097 7 H 0.116 0.884 8 C -0.104 4.104 9 C -0.135 4.135 10 C 0.098 3.902 11 N -0.614 5.614 12 C 0.522 3.478 13 O -0.509 6.509 14 C 0.047 3.953 15 O -0.342 6.342 16 C 0.459 3.541 17 O -0.506 6.506 18 C -0.102 4.102 19 C 0.033 3.967 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.896 3.104 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.125 3.875 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.261 0.739 47 H 0.109 0.891 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 -31.711 4.258 32.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.271 6.271 4 C 0.314 3.686 5 O -0.392 6.392 6 C -0.117 4.117 7 H 0.133 0.867 8 C -0.142 4.142 9 C -0.173 4.173 10 C -0.024 4.024 11 N -0.350 5.350 12 C 0.309 3.691 13 O -0.382 6.382 14 C -0.031 4.031 15 O -0.259 6.259 16 C 0.303 3.697 17 O -0.392 6.392 18 C -0.139 4.139 19 C -0.004 4.004 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.210 1.210 28 C 0.003 3.997 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.127 0.873 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.582 -31.845 4.222 32.129 hybrid contribution -0.197 0.487 0.016 0.526 sum 0.385 -31.358 4.238 31.645 Atomic orbital electron populations 1.21825 0.92329 1.03089 1.03903 1.23077 0.95660 0.79849 1.02617 1.86549 1.24219 1.32713 1.83579 1.23463 0.80748 0.92155 0.72255 1.90676 1.60497 1.42908 1.45074 1.21431 0.97492 0.90151 1.02614 0.86653 1.21456 0.91057 0.97377 1.04321 1.21956 1.01741 0.95226 0.98425 1.21943 0.79060 1.02548 0.98895 1.47953 1.07252 1.05465 1.74363 1.20240 0.87668 0.84878 0.76305 1.90757 1.13569 1.86522 1.47354 1.22560 0.91217 0.84759 1.04535 1.86669 1.39162 1.15771 1.84327 1.24956 0.90433 0.82762 0.71540 1.90635 1.18182 1.84905 1.45483 1.21803 0.97468 0.90479 1.04186 1.19043 0.95120 0.87380 0.98902 1.21200 0.93261 0.90996 1.51126 0.92171 1.25018 0.95154 0.99036 0.95132 1.70003 1.12101 1.20757 1.49973 0.86479 0.81206 0.82300 0.77656 1.19620 1.20984 1.20977 1.21331 1.00062 0.82851 0.95495 0.90132 0.91301 0.91203 0.91107 0.91174 0.90476 0.90312 0.89343 0.90748 0.90367 0.88884 0.88306 0.88307 0.88687 0.88677 0.95531 0.95523 0.92917 0.87279 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.29 37.16 0.38 -0.34 16 2 C 0.06 0.40 6.19 37.16 0.23 0.63 16 3 O -0.35 -3.01 10.15 -39.25 -0.40 -3.41 16 4 C 0.47 4.09 7.26 36.01 0.26 4.35 16 5 O -0.50 -5.43 15.73 -18.75 -0.29 -5.72 16 6 C -0.10 -0.68 2.76 -91.87 -0.25 -0.93 16 7 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.10 -0.61 4.46 -26.69 -0.12 -0.73 16 9 C -0.14 -0.65 6.08 -26.61 -0.16 -0.81 16 10 C 0.10 0.57 6.35 -3.71 -0.02 0.55 16 11 N -0.61 -5.38 2.98 -173.03 -0.52 -5.89 16 12 C 0.52 6.50 7.78 -10.98 -0.09 6.41 16 13 O -0.51 -8.35 15.92 -14.10 -0.22 -8.57 16 14 C 0.05 0.60 4.29 36.01 0.15 0.75 16 15 O -0.34 -5.86 9.75 -45.89 -0.45 -6.30 16 16 C 0.46 8.90 7.96 36.00 0.29 9.19 16 17 O -0.51 -10.89 15.73 -18.75 -0.29 -11.18 16 18 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 19 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 20 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 21 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 24 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.13 1.01 5.62 -3.93 -0.02 0.99 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 35 H 0.08 0.47 8.07 -51.93 -0.42 0.06 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.50 5.93 -51.93 -0.31 0.19 16 40 H 0.10 1.10 7.93 -51.93 -0.41 0.69 16 41 H 0.10 1.09 7.69 -51.93 -0.40 0.69 16 42 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 43 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.11 1.07 7.01 -51.93 -0.36 0.70 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -36.00 402.70 -8.21 -44.21 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -7.78 Total: -4.63 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.04 Total: 5.10 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.22 Total: -31.95 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.66 Total: -35.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.00 -8.21 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.683 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds