Wall clock time and date at job start Wed Apr 1 2020 01:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.46960 * 2 1 4 4 C 1.34227 * 117.00210 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00070 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.49964 * 59.93586 * 6 4 3 8 8 C 1.53043 * 109.49784 * 180.02562 * 6 4 3 9 9 C 1.53033 * 109.53848 * 181.35173 * 8 6 4 10 10 C 1.53195 * 109.30987 * 298.62642 * 9 8 6 11 11 N 1.46926 * 108.77416 * 54.64072 * 10 9 8 12 12 C 1.34776 * 120.63461 * 126.36904 * 11 10 9 13 13 O 1.21277 * 120.00250 * 179.97438 * 12 11 10 14 14 C 1.50703 * 119.99642 * 359.97438 * 12 11 10 15 15 O 1.45205 * 109.46946 * 180.02562 * 14 12 11 16 16 C 1.34225 * 116.99943 * 180.02562 * 15 14 12 17 17 O 1.20825 * 120.00047 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99990 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.47184 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.47184 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99944 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47046 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46873 * 120.00118 * 24 22 20 27 27 H 1.48497 * 109.47510 * 240.00153 * 24 22 20 28 28 C 1.46923 * 118.73595 * 306.63901 * 11 10 9 29 29 H 1.08997 * 109.46620 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47561 * 299.99870 * 1 2 3 31 31 H 1.09003 * 109.47114 * 59.99871 * 1 2 3 32 32 H 1.08996 * 109.47158 * 240.00487 * 2 1 3 33 33 H 1.08992 * 109.47222 * 119.99685 * 2 1 3 34 34 H 1.08996 * 109.46511 * 61.31945 * 8 6 4 35 35 H 1.09003 * 109.44294 * 301.35821 * 8 6 4 36 36 H 1.09006 * 109.49853 * 178.68312 * 9 8 6 37 37 H 1.09000 * 109.50137 * 58.57947 * 9 8 6 38 38 H 1.08997 * 109.58857 * 294.84863 * 10 9 8 39 39 H 1.08998 * 109.70556 * 174.49197 * 10 9 8 40 40 H 1.09004 * 109.46726 * 60.00438 * 14 12 11 41 41 H 1.08993 * 109.47205 * 300.00242 * 14 12 11 42 42 H 1.09001 * 109.46665 * 60.00348 * 18 16 15 43 43 H 1.08993 * 109.47304 * 299.99904 * 18 16 15 44 44 H 1.09001 * 109.46801 * 300.00442 * 19 18 16 45 45 H 1.09001 * 109.46998 * 60.00038 * 19 18 16 46 46 H 0.96997 * 119.99752 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.59119 * 173.14223 * 28 11 10 48 48 H 1.08998 * 109.59450 * 293.57088 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 1 3.5837 3.4702 0.8904 8 6 5.4490 2.8582 0.0010 9 6 6.0348 4.2716 0.0357 10 6 5.5903 5.0350 -1.2159 11 7 4.1242 4.9915 -1.3005 12 6 3.4092 6.1276 -1.4211 13 8 2.1994 6.0783 -1.4905 14 6 4.1131 7.4592 -1.4696 15 8 3.1314 8.5211 -1.6005 16 6 3.5979 9.7784 -1.6587 17 8 4.7870 9.9848 -1.6027 18 6 2.6384 10.9324 -1.7952 19 6 3.4227 12.2455 -1.8376 20 6 2.4632 13.3996 -1.9734 21 1 1.4003 13.2150 -2.0240 22 6 2.9422 14.6911 -2.0320 23 7 4.2366 14.9159 -1.9699 24 14 1.7528 16.1217 -2.1997 25 1 0.3612 15.6055 -2.2473 26 1 1.9038 17.0301 -1.0345 27 1 2.0478 16.8669 -3.4498 28 6 3.4518 3.6863 -1.2452 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 5.7861 2.3473 -0.9008 35 1 5.7837 2.3049 0.8785 36 1 7.1231 4.2139 0.0592 37 1 5.6783 4.7916 0.9248 38 1 6.0215 4.5679 -2.1013 39 1 5.9219 6.0713 -1.1514 40 1 4.7894 7.4817 -2.3242 41 1 4.6828 7.6027 -0.5516 42 1 1.9591 10.9428 -0.9428 43 1 2.0651 10.8214 -2.7155 44 1 3.9958 12.3562 -0.9170 45 1 4.1024 12.2354 -2.6897 46 1 4.5736 15.8245 -2.0116 47 1 2.3728 3.8327 -1.1974 48 1 3.7050 3.1068 -2.1330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:20 Heat of formation + Delta-G solvation = -242.505938 kcal Electronic energy + Delta-G solvation = -29276.831427 eV Core-core repulsion = 24909.801565 eV Total energy + Delta-G solvation = -4367.029862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08658 -41.65483 -40.85663 -38.69464 -37.71553 -37.45781 -35.63496 -34.40208 -33.17217 -33.01670 -32.23576 -30.20180 -27.89416 -26.47830 -25.77666 -24.11341 -23.97850 -22.81413 -21.57502 -21.39560 -20.30041 -19.22905 -18.86148 -18.33912 -18.15831 -17.92406 -17.80674 -17.37733 -17.12708 -16.47401 -16.41644 -16.26262 -15.76056 -15.24942 -15.11492 -14.80059 -14.68214 -14.55306 -14.26073 -14.23309 -13.84554 -13.69247 -13.68065 -13.60516 -13.15209 -12.97316 -12.84988 -12.67454 -12.52121 -12.48092 -12.10246 -12.07503 -12.00946 -11.87218 -11.76347 -11.74654 -11.59047 -11.56699 -11.49413 -11.26279 -10.97879 -10.56581 -9.90521 -8.18835 -6.31720 0.91710 1.18627 1.19298 1.32638 1.45264 1.45273 1.58273 1.59776 2.11756 2.44953 3.15266 3.20481 3.44362 3.57435 3.62540 3.85583 3.93183 3.97756 3.98768 4.01429 4.03518 4.06243 4.09842 4.31548 4.41662 4.46129 4.46739 4.47788 4.63128 4.68028 4.80647 4.81452 4.88334 4.89256 4.98751 5.06443 5.12027 5.23710 5.30352 5.32734 5.41820 5.49270 5.57960 5.82507 6.06769 6.15487 6.58964 6.73404 6.86175 6.90046 7.38245 8.93771 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.001732 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.733671 B =16166.447317 C =17231.317760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.364 6.364 4 C 0.474 3.526 5 O -0.527 6.527 6 C -0.090 4.090 7 H 0.119 0.881 8 C -0.101 4.101 9 C -0.128 4.128 10 C 0.090 3.910 11 N -0.601 5.601 12 C 0.524 3.476 13 O -0.557 6.557 14 C 0.040 3.960 15 O -0.347 6.347 16 C 0.471 3.529 17 O -0.533 6.533 18 C -0.096 4.096 19 C 0.039 3.961 20 C -0.545 4.545 21 H 0.075 0.925 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.972 3.028 25 H -0.256 1.256 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.126 3.874 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.113 0.887 44 H -0.005 1.005 45 H -0.006 1.006 46 H 0.264 0.736 47 H 0.090 0.910 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -32.502 4.308 32.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.281 6.281 4 C 0.317 3.683 5 O -0.416 6.416 6 C -0.110 4.110 7 H 0.137 0.863 8 C -0.138 4.138 9 C -0.166 4.166 10 C -0.031 4.031 11 N -0.336 5.336 12 C 0.312 3.688 13 O -0.434 6.434 14 C -0.037 4.037 15 O -0.263 6.263 16 C 0.316 3.684 17 O -0.422 6.422 18 C -0.133 4.133 19 C 0.002 3.998 20 C -0.582 4.582 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.796 3.204 25 H -0.180 1.180 26 H -0.206 1.206 27 H -0.206 1.206 28 C 0.004 3.996 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.013 0.987 45 H 0.013 0.987 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.139 -32.689 4.279 32.968 hybrid contribution -0.005 0.570 0.013 0.571 sum 0.134 -32.119 4.291 32.404 Atomic orbital electron populations 1.21843 0.90952 1.04354 1.03565 1.23298 0.96796 0.79000 1.02818 1.86560 1.24210 1.33992 1.83309 1.23718 0.80651 0.92437 0.71456 1.90662 1.60923 1.43713 1.46271 1.21427 0.98434 0.89071 1.02084 0.86342 1.21455 0.89837 0.98145 1.04396 1.21941 1.02948 0.94086 0.97657 1.22268 0.76878 1.03590 1.00410 1.47975 1.08515 1.04618 1.72476 1.20189 0.87080 0.85517 0.76025 1.90742 1.15444 1.87159 1.50100 1.22937 0.90723 0.83522 1.06469 1.86597 1.40396 1.15574 1.83737 1.24470 0.89490 0.83444 0.70980 1.90626 1.19130 1.85502 1.46917 1.21536 0.97191 0.88579 1.06003 1.18813 0.94734 0.90441 0.95832 1.21674 0.94209 0.91769 1.50581 0.90728 1.26040 0.96941 1.02367 0.94625 1.70149 1.14398 1.21597 1.51169 0.85294 0.79238 0.78251 0.77596 1.18005 1.20582 1.20578 1.21335 0.99045 0.82612 0.96621 0.88073 0.91526 0.91590 0.90938 0.90964 0.90377 0.90307 0.87175 0.90909 0.88447 0.88120 0.86394 0.86304 0.86837 0.86848 0.98699 0.98711 0.92741 0.89195 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.05 0.68 6.19 71.98 0.45 1.12 16 3 O -0.36 -6.14 10.15 -51.39 -0.52 -6.66 16 4 C 0.47 7.97 7.26 71.24 0.52 8.49 16 5 O -0.53 -11.03 15.73 21.97 0.35 -10.68 16 6 C -0.09 -1.17 2.76 -11.60 -0.03 -1.20 16 7 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 8 C -0.10 -0.98 4.46 30.62 0.14 -0.84 16 9 C -0.13 -0.89 6.08 30.67 0.19 -0.70 16 10 C 0.09 0.81 6.35 86.36 0.55 1.35 16 11 N -0.60 -9.61 2.98 -819.74 -2.44 -12.06 16 12 C 0.52 12.55 7.78 87.66 0.68 13.24 16 13 O -0.56 -18.30 15.92 15.78 0.25 -18.05 16 14 C 0.04 0.96 4.29 71.24 0.31 1.27 16 15 O -0.35 -11.52 9.75 -45.01 -0.44 -11.96 16 16 C 0.47 18.05 7.96 71.24 0.57 18.62 16 17 O -0.53 -22.99 15.73 21.97 0.35 -22.64 16 18 C -0.10 -3.88 5.75 29.85 0.17 -3.71 16 19 C 0.04 2.08 4.26 29.85 0.13 2.21 16 20 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 21 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 22 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 23 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 24 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 28 C 0.13 1.93 5.62 86.22 0.48 2.42 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 34 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.08 0.81 8.07 -2.39 -0.02 0.79 16 36 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 39 H 0.10 0.80 5.93 -2.39 -0.01 0.79 16 40 H 0.12 2.40 7.93 -2.39 -0.02 2.38 16 41 H 0.12 2.39 7.69 -2.39 -0.02 2.38 16 42 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 43 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 44 H -0.01 -0.32 8.10 -2.39 -0.02 -0.34 16 45 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 46 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.09 1.78 7.01 -2.39 -0.02 1.76 16 48 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -79.03 402.70 6.38 -72.66 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.95 Total: 8.66 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 5.58 Total: 11.98 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -2.16 Total: -68.99 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: -0.02 Total: -70.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -79.03 6.38 -72.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.847 kcal (2) G-P(sol) polarization free energy of solvation -79.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds