Wall clock time and date at job start Wed Apr 1 2020 01:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45199 * 109.46715 * 2 1 4 4 C 1.34229 * 116.99669 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99955 * 180.02562 * 4 3 2 7 7 C 1.53070 * 109.44585 * 59.78903 * 6 4 3 8 8 C 1.53195 * 109.29524 * 181.23845 * 7 6 4 9 9 N 1.46919 * 108.89273 * 305.57804 * 8 7 6 10 10 C 1.34783 * 120.63144 * 233.55709 * 9 8 7 11 11 O 1.21274 * 119.99655 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99922 * 179.97438 * 10 9 8 13 13 O 1.45205 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.34231 * 116.99806 * 179.97438 * 13 12 10 15 15 O 1.20826 * 120.00183 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99606 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.46889 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47119 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00196 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99746 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99458 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00134 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.46997 * 89.99842 * 22 20 18 24 24 H 1.48503 * 109.46738 * 209.99433 * 22 20 18 25 25 H 1.48496 * 109.47002 * 329.99766 * 22 20 18 26 26 C 1.46928 * 118.73982 * 53.53793 * 9 8 7 27 27 C 1.53039 * 109.46083 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46899 * 300.00110 * 1 2 3 30 30 H 1.09001 * 109.47031 * 59.99787 * 1 2 3 31 31 H 1.08996 * 109.46899 * 239.99890 * 2 1 3 32 32 H 1.08992 * 109.46917 * 120.00014 * 2 1 3 33 33 H 1.09007 * 109.45494 * 299.96161 * 6 4 3 34 34 H 1.08997 * 109.38860 * 61.36032 * 7 6 4 35 35 H 1.09003 * 109.62046 * 301.25375 * 7 6 4 36 36 H 1.09002 * 109.58720 * 185.71834 * 8 7 6 37 37 H 1.08996 * 109.58651 * 65.43731 * 8 7 6 38 38 H 1.09001 * 109.47385 * 300.00399 * 12 10 9 39 39 H 1.08997 * 109.47457 * 60.00250 * 12 10 9 40 40 H 1.09002 * 109.47129 * 300.00148 * 16 14 13 41 41 H 1.08992 * 109.47200 * 60.00169 * 16 14 13 42 42 H 1.08998 * 109.47370 * 299.99653 * 17 16 14 43 43 H 1.09003 * 109.47990 * 59.99709 * 17 16 14 44 44 H 0.97003 * 119.99528 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.58787 * 66.18123 * 26 9 8 46 46 H 1.09007 * 109.58600 * 186.46436 * 26 9 8 47 47 H 1.09002 * 109.49876 * 58.67167 * 27 6 4 48 48 H 1.09005 * 109.52615 * 298.59417 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.4449 3.6852 1.2480 8 6 4.0071 5.1101 1.2295 9 7 5.4674 5.0435 1.0827 10 6 6.2751 5.6760 1.9570 11 8 5.7978 6.3074 2.8758 12 6 7.7711 5.5976 1.7933 13 8 8.4141 6.3549 2.8523 14 6 9.7561 6.3858 2.8508 15 8 10.3730 5.7999 1.9929 16 6 10.4932 7.1513 3.9193 17 6 12.0005 7.0262 3.6883 18 6 12.7377 7.7922 4.7565 19 1 12.1864 8.3155 5.5236 20 6 14.1162 7.8240 4.7549 21 7 14.7594 8.4921 5.6874 22 14 15.0698 6.9182 3.4285 23 1 15.2951 7.8250 2.2742 24 1 16.3786 6.4767 3.9739 25 1 14.2939 5.7331 2.9829 26 6 6.0308 4.2738 -0.0349 27 6 5.4489 2.8571 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5846 3.4697 -0.8900 34 1 3.7994 3.1657 2.1382 35 1 2.3556 3.7240 1.2584 36 1 3.7563 5.6141 2.1629 37 1 3.5804 5.6605 0.3910 38 1 8.0885 4.5563 1.8475 39 1 8.0531 6.0135 0.8260 40 1 10.2056 8.2018 3.8776 41 1 10.2403 6.7439 4.8981 42 1 12.2885 5.9758 3.7298 43 1 12.2533 7.4338 2.7095 44 1 15.7292 8.5148 5.6861 45 1 5.7689 4.7538 -0.9778 46 1 7.1155 4.2281 0.0630 47 1 5.7842 2.3049 -0.8781 48 1 5.7870 2.3466 0.9017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:25 Heat of formation + Delta-G solvation = -219.118772 kcal Electronic energy + Delta-G solvation = -29159.939016 eV Core-core repulsion = 24793.923298 eV Total energy + Delta-G solvation = -4366.015718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34566 -40.59397 -39.82887 -37.92671 -36.98588 -36.17829 -33.84455 -33.63082 -32.16645 -31.91597 -31.44424 -29.20393 -26.95524 -26.08716 -24.15389 -23.63675 -22.51039 -21.86561 -20.95989 -19.89477 -19.55654 -18.29079 -17.88960 -17.27065 -17.12580 -16.91365 -16.75046 -16.61472 -16.17270 -15.52222 -15.19996 -15.05669 -14.51080 -14.35230 -14.20944 -14.11384 -13.87905 -13.60694 -13.38602 -13.20643 -12.93230 -12.74022 -12.61089 -12.45259 -12.39719 -12.36009 -12.12669 -11.87594 -11.47908 -11.43714 -11.32057 -11.07066 -11.03111 -10.82476 -10.69383 -10.35047 -10.20937 -10.10375 -9.92535 -9.72490 -9.25772 -9.16949 -8.55464 -6.06690 -4.06638 1.67664 2.05946 2.16293 2.27738 2.60513 3.12778 3.33993 3.41070 3.49548 3.87386 3.97823 4.08162 4.22239 4.36887 4.40178 4.41249 4.46151 4.51906 4.67827 4.70525 4.77669 4.84958 4.87981 4.99182 5.02765 5.12878 5.20629 5.21992 5.23096 5.27860 5.32488 5.39257 5.42657 5.47949 5.64014 5.93198 5.97850 6.00056 6.03551 6.41033 6.68933 6.85785 7.22482 7.22841 7.30151 7.70322 7.78815 8.11361 8.47329 8.96095 9.54781 11.05916 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.001691 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.694818 B =16557.190544 C =17132.816674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.466 3.534 5 O -0.504 6.504 6 C -0.079 4.079 7 C -0.126 4.126 8 C 0.116 3.884 9 N -0.617 5.617 10 C 0.521 3.479 11 O -0.510 6.510 12 C 0.045 3.955 13 O -0.339 6.339 14 C 0.460 3.540 15 O -0.511 6.511 16 C -0.094 4.094 17 C -0.002 4.002 18 C -0.528 4.528 19 H 0.076 0.924 20 C 0.071 3.929 21 N -0.900 5.900 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.262 1.262 26 C 0.104 3.896 27 C -0.122 4.122 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.026 0.974 43 H 0.022 0.978 44 H 0.264 0.736 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.132 -14.851 -16.261 38.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.098 4.098 7 C -0.165 4.165 8 C -0.006 4.006 9 N -0.354 5.354 10 C 0.308 3.692 11 O -0.384 6.384 12 C -0.032 4.032 13 O -0.256 6.256 14 C 0.304 3.696 15 O -0.398 6.398 16 C -0.132 4.132 17 C -0.039 4.039 18 C -0.565 4.565 19 H 0.094 0.906 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.186 1.186 26 C -0.019 4.019 27 C -0.160 4.160 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.834 -14.952 -15.944 37.796 hybrid contribution 0.629 -0.889 -0.948 1.444 sum -30.205 -15.841 -16.892 38.060 Atomic orbital electron populations 1.21816 0.92408 1.03145 1.03633 1.23062 0.95526 0.79997 1.02711 1.86499 1.24453 1.32607 1.83867 1.23711 0.80643 0.92577 0.72213 1.90694 1.60432 1.43115 1.44892 1.21108 0.96556 0.89976 1.02177 1.21961 1.02092 0.95872 0.96544 1.21588 0.78723 0.95984 1.04355 1.48049 1.06648 1.51963 1.28721 1.20187 0.88221 0.79017 0.81733 1.90753 1.76432 1.40238 1.30986 1.22600 0.89954 0.98389 0.92295 1.86665 1.23004 1.66827 1.49092 1.24921 0.79381 0.78767 0.86492 1.90621 1.68105 1.42905 1.38217 1.21573 0.96841 0.99859 0.94879 1.19496 0.88272 0.98229 0.97930 1.21034 0.91639 1.32040 1.11819 0.90577 1.24953 0.97672 0.94823 0.95627 1.69908 1.08281 1.41836 1.33787 0.86803 0.79362 0.81195 0.82211 1.20182 1.21318 1.18615 1.21865 0.99493 0.90736 0.89763 1.21873 0.92061 0.97004 1.05083 0.90123 0.91347 0.91406 0.91175 0.91138 0.86865 0.90615 0.88904 0.87970 0.90679 0.88333 0.88309 0.88052 0.88038 0.95565 0.96006 0.92603 0.90216 0.88678 0.89171 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.29 37.16 0.38 -0.12 16 2 C 0.06 0.34 6.19 37.16 0.23 0.57 16 3 O -0.36 -2.48 10.10 -39.25 -0.40 -2.87 16 4 C 0.47 3.59 7.26 36.01 0.26 3.86 16 5 O -0.50 -5.41 15.73 -18.75 -0.29 -5.70 16 6 C -0.08 -0.42 2.59 -91.72 -0.24 -0.65 16 7 C -0.13 -0.68 5.31 -26.59 -0.14 -0.82 16 8 C 0.12 0.75 6.43 -3.71 -0.02 0.73 16 9 N -0.62 -5.04 2.97 -172.77 -0.51 -5.55 16 10 C 0.52 6.31 7.78 -10.98 -0.09 6.23 16 11 O -0.51 -8.23 15.91 -14.10 -0.22 -8.45 16 12 C 0.05 0.56 4.29 36.00 0.15 0.71 16 13 O -0.34 -5.64 9.76 -45.91 -0.45 -6.09 16 14 C 0.46 8.53 7.96 36.01 0.29 8.82 16 15 O -0.51 -10.41 15.73 -18.75 -0.29 -10.70 16 16 C -0.09 -1.86 5.75 -27.89 -0.16 -2.02 16 17 C 0.00 -0.04 3.33 -27.88 -0.09 -0.14 16 18 C -0.53 -14.91 9.66 -34.44 -0.33 -15.25 16 19 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 22 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 26 C 0.10 0.57 6.34 -3.71 -0.02 0.54 16 27 C -0.12 -0.70 4.66 -26.61 -0.12 -0.83 16 28 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 33 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.10 0.84 7.00 -51.93 -0.36 0.48 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 1.07 7.69 -51.93 -0.40 0.68 16 39 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 41 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 42 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 43 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.09 0.50 5.93 -51.92 -0.31 0.19 16 47 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 48 H 0.08 0.61 8.13 -51.93 -0.42 0.18 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -36.92 399.04 -7.80 -44.72 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -7.74 Total: -5.54 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 0.00 Total: 3.62 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.26 Total: -32.40 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.66 Total: -33.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.92 -7.80 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.396 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds