Wall clock time and date at job start Wed Apr 1 2020 01:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45199 * 109.46715 * 2 1 4 4 C 1.34229 * 116.99669 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99955 * 180.02562 * 4 3 2 7 7 C 1.53070 * 109.44585 * 59.78903 * 6 4 3 8 8 C 1.53195 * 109.29524 * 181.23845 * 7 6 4 9 9 N 1.46919 * 108.89273 * 305.57804 * 8 7 6 10 10 C 1.34783 * 120.63144 * 233.55709 * 9 8 7 11 11 O 1.21274 * 119.99655 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99922 * 179.97438 * 10 9 8 13 13 O 1.45205 * 109.46924 * 180.02562 * 12 10 9 14 14 C 1.34231 * 116.99806 * 179.97438 * 13 12 10 15 15 O 1.20826 * 120.00183 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99606 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.46889 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47119 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00196 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99746 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99458 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00134 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.46997 * 89.99842 * 22 20 18 24 24 H 1.48503 * 109.46738 * 209.99433 * 22 20 18 25 25 H 1.48496 * 109.47002 * 329.99766 * 22 20 18 26 26 C 1.46928 * 118.73982 * 53.53793 * 9 8 7 27 27 C 1.53039 * 109.46083 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46899 * 300.00110 * 1 2 3 30 30 H 1.09001 * 109.47031 * 59.99787 * 1 2 3 31 31 H 1.08996 * 109.46899 * 239.99890 * 2 1 3 32 32 H 1.08992 * 109.46917 * 120.00014 * 2 1 3 33 33 H 1.09007 * 109.45494 * 299.96161 * 6 4 3 34 34 H 1.08997 * 109.38860 * 61.36032 * 7 6 4 35 35 H 1.09003 * 109.62046 * 301.25375 * 7 6 4 36 36 H 1.09002 * 109.58720 * 185.71834 * 8 7 6 37 37 H 1.08996 * 109.58651 * 65.43731 * 8 7 6 38 38 H 1.09001 * 109.47385 * 300.00399 * 12 10 9 39 39 H 1.08997 * 109.47457 * 60.00250 * 12 10 9 40 40 H 1.09002 * 109.47129 * 300.00148 * 16 14 13 41 41 H 1.08992 * 109.47200 * 60.00169 * 16 14 13 42 42 H 1.08998 * 109.47370 * 299.99653 * 17 16 14 43 43 H 1.09003 * 109.47990 * 59.99709 * 17 16 14 44 44 H 0.97003 * 119.99528 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.58787 * 66.18123 * 26 9 8 46 46 H 1.09007 * 109.58600 * 186.46436 * 26 9 8 47 47 H 1.09002 * 109.49876 * 58.67167 * 27 6 4 48 48 H 1.09005 * 109.52615 * 298.59417 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.4449 3.6852 1.2480 8 6 4.0071 5.1101 1.2295 9 7 5.4674 5.0435 1.0827 10 6 6.2751 5.6760 1.9570 11 8 5.7978 6.3074 2.8758 12 6 7.7711 5.5976 1.7933 13 8 8.4141 6.3549 2.8523 14 6 9.7561 6.3858 2.8508 15 8 10.3730 5.7999 1.9929 16 6 10.4932 7.1513 3.9193 17 6 12.0005 7.0262 3.6883 18 6 12.7377 7.7922 4.7565 19 1 12.1864 8.3155 5.5236 20 6 14.1162 7.8240 4.7549 21 7 14.7594 8.4921 5.6874 22 14 15.0698 6.9182 3.4285 23 1 15.2951 7.8250 2.2742 24 1 16.3786 6.4767 3.9739 25 1 14.2939 5.7331 2.9829 26 6 6.0308 4.2738 -0.0349 27 6 5.4489 2.8571 -0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.5846 3.4697 -0.8900 34 1 3.7994 3.1657 2.1382 35 1 2.3556 3.7240 1.2584 36 1 3.7563 5.6141 2.1629 37 1 3.5804 5.6605 0.3910 38 1 8.0885 4.5563 1.8475 39 1 8.0531 6.0135 0.8260 40 1 10.2056 8.2018 3.8776 41 1 10.2403 6.7439 4.8981 42 1 12.2885 5.9758 3.7298 43 1 12.2533 7.4338 2.7095 44 1 15.7292 8.5148 5.6861 45 1 5.7689 4.7538 -0.9778 46 1 7.1155 4.2281 0.0630 47 1 5.7842 2.3049 -0.8781 48 1 5.7870 2.3466 0.9017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:24 Heat of formation + Delta-G solvation = -241.190844 kcal Electronic energy + Delta-G solvation = -29160.896133 eV Core-core repulsion = 24793.923298 eV Total energy + Delta-G solvation = -4366.972835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01575 -41.66367 -40.86146 -38.66081 -37.70131 -37.46672 -35.62927 -34.50571 -33.46223 -32.54899 -32.41853 -30.23478 -28.28450 -27.21006 -24.62046 -24.27469 -23.65131 -22.92302 -21.61606 -21.45466 -20.24121 -19.45806 -18.84908 -18.51553 -18.18985 -17.95874 -17.66766 -17.50084 -17.08076 -16.52333 -16.35779 -16.19714 -15.53052 -15.33225 -15.09047 -14.81276 -14.78268 -14.72410 -14.47719 -14.16860 -13.83648 -13.70565 -13.65158 -13.36533 -13.28549 -13.11881 -12.91818 -12.90915 -12.52480 -12.34540 -12.24727 -12.02877 -11.91553 -11.90869 -11.82239 -11.77739 -11.54723 -11.53587 -11.43709 -11.41234 -10.96547 -10.77557 -9.84877 -8.30412 -6.35203 1.08974 1.14186 1.18391 1.34441 1.36453 1.38445 1.51976 1.62973 2.13030 2.36143 3.05021 3.22837 3.39719 3.63524 3.65785 3.82758 3.91613 3.97666 3.98199 4.01306 4.05657 4.09762 4.25870 4.28925 4.32450 4.33244 4.38406 4.54667 4.63656 4.70072 4.78649 4.81870 4.84812 4.90799 4.91657 5.02309 5.13907 5.18041 5.19292 5.30043 5.37265 5.43204 5.44529 5.59078 6.10371 6.22456 6.65869 6.66222 6.75222 6.93884 7.29859 8.85305 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.025951 B = 0.001691 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.694818 B =16557.190544 C =17132.816674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.466 3.534 5 O -0.541 6.541 6 C -0.074 4.074 7 C -0.117 4.117 8 C 0.113 3.887 9 N -0.606 5.606 10 C 0.521 3.479 11 O -0.561 6.561 12 C 0.038 3.962 13 O -0.347 6.347 14 C 0.474 3.526 15 O -0.530 6.530 16 C -0.093 4.093 17 C 0.003 3.997 18 C -0.535 4.535 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.944 5.944 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.255 1.255 26 C 0.102 3.898 27 C -0.119 4.119 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.146 0.854 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.268 0.732 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.602 -15.694 -19.027 40.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.311 3.689 5 O -0.430 6.430 6 C -0.093 4.093 7 C -0.155 4.155 8 C -0.008 4.008 9 N -0.341 5.341 10 C 0.308 3.692 11 O -0.439 6.439 12 C -0.039 4.039 13 O -0.263 6.263 14 C 0.319 3.681 15 O -0.419 6.419 16 C -0.130 4.130 17 C -0.034 4.034 18 C -0.572 4.572 19 H 0.066 0.934 20 C -0.184 4.184 21 N -0.584 5.584 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.179 1.179 26 C -0.020 4.020 27 C -0.157 4.157 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.130 0.870 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.361 -15.817 -18.748 40.606 hybrid contribution 0.930 -0.672 -0.084 1.151 sum -31.430 -16.489 -18.832 40.179 Atomic orbital electron populations 1.21821 0.90502 1.04249 1.03832 1.23249 0.97040 0.79407 1.02334 1.86506 1.24066 1.33386 1.83460 1.24192 0.80631 0.93091 0.71024 1.90682 1.61182 1.44446 1.46712 1.21189 0.96057 0.88743 1.03294 1.21878 1.03018 0.94844 0.95799 1.21752 0.77649 0.96722 1.04668 1.48137 1.07182 1.50568 1.28185 1.20184 0.88273 0.79012 0.81711 1.90737 1.77079 1.42902 1.33209 1.22985 0.90020 0.98909 0.91960 1.86600 1.21729 1.67322 1.50681 1.24318 0.80023 0.78153 0.85629 1.90609 1.68712 1.43769 1.38859 1.21352 0.94433 1.01147 0.96092 1.19329 0.90919 0.96907 0.96264 1.21354 0.92035 1.31778 1.12079 0.93381 1.25839 0.98908 0.95758 0.97915 1.70036 1.08817 1.43647 1.35881 0.85777 0.78014 0.80166 0.79466 1.19119 1.20596 1.17850 1.22124 0.99718 0.90276 0.89871 1.21825 0.92488 0.97009 1.04375 0.88609 0.91317 0.90955 0.91288 0.91886 0.83685 0.92663 0.87176 0.89982 0.87657 0.86760 0.86009 0.86958 0.87147 0.96113 0.96086 0.92318 0.86966 0.88298 0.88379 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 71.98 0.74 0.01 16 2 C 0.05 0.54 6.19 71.98 0.45 0.99 16 3 O -0.36 -4.46 10.10 -51.40 -0.52 -4.98 16 4 C 0.47 6.60 7.26 71.24 0.52 7.12 16 5 O -0.54 -11.41 15.73 21.96 0.35 -11.06 16 6 C -0.07 -0.60 2.59 -11.50 -0.03 -0.63 16 7 C -0.12 -1.04 5.31 30.68 0.16 -0.87 16 8 C 0.11 1.23 6.43 86.36 0.56 1.79 16 9 N -0.61 -8.63 2.97 -818.91 -2.44 -11.06 16 10 C 0.52 12.02 7.78 87.66 0.68 12.70 16 11 O -0.56 -18.12 15.91 15.79 0.25 -17.87 16 12 C 0.04 0.87 4.29 71.24 0.31 1.18 16 13 O -0.35 -11.14 9.76 -45.08 -0.44 -11.58 16 14 C 0.47 16.95 7.96 71.24 0.57 17.51 16 15 O -0.53 -20.65 15.73 21.96 0.35 -20.30 16 16 C -0.09 -3.60 5.75 29.85 0.17 -3.43 16 17 C 0.00 0.16 3.33 29.85 0.10 0.26 16 18 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 19 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 20 C 0.01 0.80 5.47 84.66 0.46 1.26 16 21 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 22 Si 0.94 45.22 27.47 68.60 1.88 47.11 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 26 C 0.10 0.79 6.34 86.36 0.55 1.34 16 27 C -0.12 -1.12 4.66 30.67 0.14 -0.98 16 28 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 32 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 33 H 0.15 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.11 0.63 8.09 -2.39 -0.02 0.61 16 36 H 0.08 1.30 7.00 -2.39 -0.02 1.28 16 37 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.11 2.27 7.69 -2.39 -0.02 2.25 16 39 H 0.12 2.24 7.93 -2.39 -0.02 2.22 16 40 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 41 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 42 H 0.02 1.01 7.16 -2.39 -0.02 0.99 16 43 H 0.02 1.00 7.53 -2.39 -0.02 0.98 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.10 0.74 5.93 -2.38 -0.01 0.73 16 47 H 0.10 0.82 8.07 -2.39 -0.02 0.80 16 48 H 0.06 0.84 8.13 -2.38 -0.02 0.82 16 Total: -1.00 -81.13 399.04 6.25 -74.89 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 0.90 Total: 5.41 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.62 Total: 7.95 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -2.14 Total: -69.56 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -0.02 Total: -65.79 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -81.13 6.25 -74.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.304 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds