Wall clock time and date at job start Wed Apr 1 2020 00:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00270 * 2 1 4 4 O 1.20826 * 119.99830 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00289 * 179.97438 * 3 2 1 6 6 C 1.53035 * 109.46169 * 180.02562 * 5 3 2 7 7 C 1.53202 * 109.31196 * 181.37284 * 6 5 3 8 8 N 1.46924 * 108.77446 * 305.36459 * 7 6 5 9 9 C 1.34775 * 120.63108 * 233.58908 * 8 7 6 10 10 O 1.21281 * 119.99613 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99947 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47124 * 304.99208 * 11 9 8 13 13 C 1.52998 * 109.47176 * 64.99663 * 11 9 8 14 14 O 1.45206 * 109.46873 * 184.99640 * 11 9 8 15 15 C 1.34224 * 117.00077 * 149.99983 * 14 11 9 16 16 O 1.20833 * 120.00103 * 359.97438 * 15 14 11 17 17 C 1.50696 * 120.00302 * 180.02562 * 15 14 11 18 18 C 1.52999 * 109.47581 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47581 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00242 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00020 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00050 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47407 * 89.99921 * 23 21 19 25 25 H 1.48499 * 109.47054 * 209.99937 * 23 21 19 26 26 H 1.48507 * 109.47204 * 329.99684 * 23 21 19 27 27 C 1.46927 * 118.73869 * 53.85626 * 8 7 6 28 28 C 1.53043 * 109.44776 * 300.06677 * 5 3 2 29 29 H 1.08995 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46925 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47106 * 59.99732 * 1 2 3 32 32 H 1.09006 * 109.45881 * 60.02568 * 5 3 2 33 33 H 1.08998 * 109.50047 * 61.42046 * 6 5 3 34 34 H 1.08992 * 109.49774 * 301.31922 * 6 5 3 35 35 H 1.08997 * 109.58418 * 185.57675 * 7 6 5 36 36 H 1.08997 * 109.69972 * 65.21799 * 7 6 5 37 37 H 1.09004 * 109.47223 * 60.00214 * 13 11 9 38 38 H 1.08997 * 109.46785 * 179.97438 * 13 11 9 39 39 H 1.09002 * 109.47171 * 299.99711 * 13 11 9 40 40 H 1.09009 * 109.46972 * 299.99362 * 17 15 14 41 41 H 1.08995 * 109.47473 * 59.99636 * 17 15 14 42 42 H 1.09005 * 109.46903 * 300.00018 * 18 17 15 43 43 H 1.09000 * 109.47608 * 59.99121 * 18 17 15 44 44 H 0.97002 * 119.99990 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.58433 * 65.93102 * 27 8 7 46 46 H 1.09005 * 109.58583 * 186.35262 * 27 8 7 47 47 H 1.09002 * 109.49470 * 298.56357 * 28 5 3 48 48 H 1.08998 * 109.50238 * 58.66476 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0000 2.7424 0.0011 7 6 5.5298 2.8187 -0.0329 8 7 6.0675 2.0302 1.0841 9 6 6.9336 2.5798 1.9583 10 8 7.2765 3.7357 1.8267 11 6 7.4768 1.7577 3.0986 12 1 6.6492 1.3418 3.6732 13 6 8.3350 0.6194 2.5431 14 8 8.2883 2.6002 3.9590 15 6 8.3367 2.2748 5.2603 16 8 7.7211 1.3179 5.6671 17 6 9.1579 3.1034 6.2142 18 6 9.0427 2.5218 7.6246 19 6 9.8634 3.3508 8.5786 20 1 10.4127 4.2067 8.2152 21 6 9.9131 3.0166 9.9153 22 7 10.6297 3.7398 10.7477 23 14 8.9625 1.5366 10.5439 24 1 9.8205 0.3271 10.4650 25 1 8.5623 1.7683 11.9551 26 1 7.7488 1.3377 9.7116 27 6 5.6478 0.6294 1.2265 28 6 4.1126 0.5797 1.2499 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9562 0.7808 -0.8895 33 1 3.6314 3.2304 0.9033 34 1 3.5913 3.2428 -0.8766 35 1 5.8461 3.8570 0.0670 36 1 5.8969 2.4140 -0.9760 37 1 9.1627 1.0354 1.9686 38 1 8.7282 0.0251 3.3679 39 1 7.7259 -0.0130 1.8972 40 1 10.2019 3.0906 5.9006 41 1 8.7907 4.1297 6.2129 42 1 7.9989 2.5341 7.9385 43 1 9.4101 1.4956 7.6256 44 1 10.6644 3.5049 11.6882 45 1 6.0225 0.0483 0.3839 46 1 6.0422 0.2226 2.1577 47 1 3.7429 1.0885 2.1402 48 1 3.7838 -0.4595 1.2612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812619094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:55 Heat of formation + Delta-G solvation = -211.428052 kcal Electronic energy + Delta-G solvation = -30017.789808 eV Core-core repulsion = 25652.107585 eV Total energy + Delta-G solvation = -4365.682224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37333 -40.75212 -39.81267 -37.84678 -36.87799 -36.31600 -34.00474 -33.63007 -32.48646 -31.47683 -30.89909 -28.62360 -26.77618 -26.56373 -24.67838 -23.88269 -22.60663 -21.73757 -20.78284 -19.85259 -19.61536 -18.21450 -17.90628 -17.37046 -17.19326 -16.85461 -16.61378 -16.37575 -16.03394 -15.50489 -15.21797 -14.77907 -14.55751 -14.33802 -14.18939 -14.01791 -13.92840 -13.48871 -13.39924 -13.13207 -12.86357 -12.65656 -12.63619 -12.55915 -12.40579 -12.19702 -11.86544 -11.74929 -11.47119 -11.40892 -11.30993 -11.24728 -11.03468 -10.85444 -10.73790 -10.33684 -10.18903 -10.03344 -9.84032 -9.71004 -9.25956 -9.14272 -8.55844 -6.06885 -4.06827 1.68152 2.13321 2.19336 2.31777 2.61332 3.10232 3.33421 3.40516 3.48976 3.88666 4.01326 4.07793 4.18904 4.43126 4.45739 4.58169 4.61768 4.63910 4.66669 4.70181 4.73600 4.80734 4.92609 5.01260 5.02633 5.08137 5.20323 5.24569 5.27511 5.39792 5.46178 5.47195 5.48187 5.69752 5.81723 5.88380 5.99610 6.00259 6.05294 6.42978 6.70181 6.89071 7.22098 7.22734 7.29957 7.70188 7.81704 8.12253 8.47197 8.95886 9.54493 11.05706 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002124 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.408808 B =13176.670646 C =14071.167554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.503 6.503 5 C -0.078 4.078 6 C -0.120 4.120 7 C 0.115 3.885 8 N -0.615 5.615 9 C 0.523 3.477 10 O -0.510 6.510 11 C 0.066 3.934 12 H 0.108 0.892 13 C -0.172 4.172 14 O -0.333 6.333 15 C 0.460 3.540 16 O -0.511 6.511 17 C -0.095 4.095 18 C -0.001 4.001 19 C -0.527 4.527 20 H 0.076 0.924 21 C 0.070 3.930 22 N -0.900 5.900 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.262 1.262 27 C 0.100 3.900 28 C -0.130 4.130 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.026 0.974 43 H 0.021 0.979 44 H 0.264 0.736 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 -11.120 -28.256 34.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.307 3.693 4 O -0.390 6.390 5 C -0.098 4.098 6 C -0.159 4.159 7 C -0.007 4.007 8 N -0.352 5.352 9 C 0.310 3.690 10 O -0.383 6.383 11 C 0.007 3.993 12 H 0.126 0.874 13 C -0.229 4.229 14 O -0.250 6.250 15 C 0.304 3.696 16 O -0.398 6.398 17 C -0.132 4.132 18 C -0.039 4.039 19 C -0.565 4.565 20 H 0.094 0.906 21 C -0.132 4.132 22 N -0.538 5.538 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.186 1.186 27 C -0.023 4.023 28 C -0.168 4.168 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.852 -10.451 -28.017 34.325 hybrid contribution -0.918 -0.911 0.413 1.357 sum -17.770 -11.362 -27.604 34.740 Atomic orbital electron populations 1.23299 0.76076 1.03875 1.02674 1.86499 1.23625 1.33386 1.83986 1.23776 0.91965 0.81401 0.72206 1.90695 1.67135 1.36384 1.44754 1.21105 0.87109 0.99573 1.01974 1.21879 0.95555 0.93543 1.04883 1.21619 0.92021 0.98498 0.88552 1.48028 1.45656 1.12685 1.28797 1.20275 0.78592 0.87513 0.82637 1.90747 1.57524 1.17017 1.73054 1.22298 0.95892 0.90751 0.90400 0.87420 1.22334 1.00927 0.96863 1.02811 1.86736 1.63698 1.54193 1.20384 1.24929 0.79710 0.84171 0.80800 1.90601 1.43040 1.28663 1.77534 1.21576 0.99001 0.99264 0.93380 1.19487 0.98241 0.96746 0.89382 1.21029 1.29455 1.13822 0.92180 0.90587 1.24959 0.94895 0.96533 0.96772 1.69905 1.40453 1.39441 1.04003 0.86796 0.81409 0.83274 0.78051 1.20173 1.21335 1.18625 1.22127 0.94023 0.82199 1.03946 1.22061 0.95663 1.02244 0.96866 0.87917 0.91763 0.91856 0.86838 0.90188 0.89393 0.87969 0.90810 0.90721 0.90209 0.89967 0.88097 0.88047 0.95612 0.96018 0.92601 0.90009 0.88253 0.90370 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.50 10.44 -39.25 -0.41 -2.91 16 3 C 0.46 3.69 7.25 36.00 0.26 3.96 16 4 O -0.50 -5.57 15.73 -18.75 -0.29 -5.87 16 5 C -0.08 -0.43 2.59 -91.73 -0.24 -0.67 16 6 C -0.12 -0.81 4.65 -26.61 -0.12 -0.94 16 7 C 0.12 0.83 6.43 -3.71 -0.02 0.80 16 8 N -0.61 -5.24 2.97 -172.50 -0.51 -5.75 16 9 C 0.52 6.62 7.12 -10.99 -0.08 6.54 16 10 O -0.51 -8.53 15.92 -14.05 -0.22 -8.75 16 11 C 0.07 0.84 2.14 -27.88 -0.06 0.78 16 12 H 0.11 1.34 6.46 -51.93 -0.34 1.01 16 13 C -0.17 -1.66 9.12 37.16 0.34 -1.32 16 14 O -0.33 -5.61 9.42 -45.87 -0.43 -6.04 16 15 C 0.46 8.57 7.93 36.00 0.29 8.86 16 16 O -0.51 -10.35 15.20 -18.76 -0.29 -10.63 16 17 C -0.09 -1.88 5.75 -27.89 -0.16 -2.04 16 18 C 0.00 -0.03 3.33 -27.89 -0.09 -0.12 16 19 C -0.53 -14.91 9.66 -34.44 -0.33 -15.25 16 20 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 23 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 27 C 0.10 0.53 5.00 -3.49 -0.02 0.51 16 28 C -0.13 -0.67 5.31 -26.39 -0.14 -0.81 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 32 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.10 0.94 7.01 -51.93 -0.36 0.57 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.51 5.39 -51.93 -0.28 0.23 16 40 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 41 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 42 H 0.03 0.65 7.15 -51.93 -0.37 0.27 16 43 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.10 0.53 4.65 -51.93 -0.24 0.29 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.35 8.08 -51.93 -0.42 -0.07 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -37.10 392.49 -7.03 -44.13 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.48 Total: -4.12 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 0.59 Total: 3.51 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.26 Total: -32.61 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.65 Total: -34.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.10 -7.03 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.300 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds