Wall clock time and date at job start Wed Apr 1 2020 00:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00270 * 2 1 4 4 O 1.20826 * 119.99830 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00289 * 179.97438 * 3 2 1 6 6 C 1.53035 * 109.46169 * 180.02562 * 5 3 2 7 7 C 1.53202 * 109.31196 * 181.37284 * 6 5 3 8 8 N 1.46924 * 108.77446 * 305.36459 * 7 6 5 9 9 C 1.34775 * 120.63108 * 233.58908 * 8 7 6 10 10 O 1.21281 * 119.99613 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99947 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47124 * 304.99208 * 11 9 8 13 13 C 1.52998 * 109.47176 * 64.99663 * 11 9 8 14 14 O 1.45206 * 109.46873 * 184.99640 * 11 9 8 15 15 C 1.34224 * 117.00077 * 149.99983 * 14 11 9 16 16 O 1.20833 * 120.00103 * 359.97438 * 15 14 11 17 17 C 1.50696 * 120.00302 * 180.02562 * 15 14 11 18 18 C 1.52999 * 109.47581 * 180.02562 * 17 15 14 19 19 C 1.50696 * 109.47581 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00242 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00020 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00050 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47407 * 89.99921 * 23 21 19 25 25 H 1.48499 * 109.47054 * 209.99937 * 23 21 19 26 26 H 1.48507 * 109.47204 * 329.99684 * 23 21 19 27 27 C 1.46927 * 118.73869 * 53.85626 * 8 7 6 28 28 C 1.53043 * 109.44776 * 300.06677 * 5 3 2 29 29 H 1.08995 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46925 * 300.00172 * 1 2 3 31 31 H 1.09001 * 109.47106 * 59.99732 * 1 2 3 32 32 H 1.09006 * 109.45881 * 60.02568 * 5 3 2 33 33 H 1.08998 * 109.50047 * 61.42046 * 6 5 3 34 34 H 1.08992 * 109.49774 * 301.31922 * 6 5 3 35 35 H 1.08997 * 109.58418 * 185.57675 * 7 6 5 36 36 H 1.08997 * 109.69972 * 65.21799 * 7 6 5 37 37 H 1.09004 * 109.47223 * 60.00214 * 13 11 9 38 38 H 1.08997 * 109.46785 * 179.97438 * 13 11 9 39 39 H 1.09002 * 109.47171 * 299.99711 * 13 11 9 40 40 H 1.09009 * 109.46972 * 299.99362 * 17 15 14 41 41 H 1.08995 * 109.47473 * 59.99636 * 17 15 14 42 42 H 1.09005 * 109.46903 * 300.00018 * 18 17 15 43 43 H 1.09000 * 109.47608 * 59.99121 * 18 17 15 44 44 H 0.97002 * 119.99990 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.58433 * 65.93102 * 27 8 7 46 46 H 1.09005 * 109.58583 * 186.35262 * 27 8 7 47 47 H 1.09002 * 109.49470 * 298.56357 * 28 5 3 48 48 H 1.08998 * 109.50238 * 58.66476 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0000 2.7424 0.0011 7 6 5.5298 2.8187 -0.0329 8 7 6.0675 2.0302 1.0841 9 6 6.9336 2.5798 1.9583 10 8 7.2765 3.7357 1.8267 11 6 7.4768 1.7577 3.0986 12 1 6.6492 1.3418 3.6732 13 6 8.3350 0.6194 2.5431 14 8 8.2883 2.6002 3.9590 15 6 8.3367 2.2748 5.2603 16 8 7.7211 1.3179 5.6671 17 6 9.1579 3.1034 6.2142 18 6 9.0427 2.5218 7.6246 19 6 9.8634 3.3508 8.5786 20 1 10.4127 4.2067 8.2152 21 6 9.9131 3.0166 9.9153 22 7 10.6297 3.7398 10.7477 23 14 8.9625 1.5366 10.5439 24 1 9.8205 0.3271 10.4650 25 1 8.5623 1.7683 11.9551 26 1 7.7488 1.3377 9.7116 27 6 5.6478 0.6294 1.2265 28 6 4.1126 0.5797 1.2499 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9562 0.7808 -0.8895 33 1 3.6314 3.2304 0.9033 34 1 3.5913 3.2428 -0.8766 35 1 5.8461 3.8570 0.0670 36 1 5.8969 2.4140 -0.9760 37 1 9.1627 1.0354 1.9686 38 1 8.7282 0.0251 3.3679 39 1 7.7259 -0.0130 1.8972 40 1 10.2019 3.0906 5.9006 41 1 8.7907 4.1297 6.2129 42 1 7.9989 2.5341 7.9385 43 1 9.4101 1.4956 7.6256 44 1 10.6644 3.5049 11.6882 45 1 6.0225 0.0483 0.3839 46 1 6.0422 0.2226 2.1577 47 1 3.7429 1.0885 2.1402 48 1 3.7838 -0.4595 1.2612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812619094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:54 Heat of formation + Delta-G solvation = -234.589069 kcal Electronic energy + Delta-G solvation = -30018.794145 eV Core-core repulsion = 25652.107585 eV Total energy + Delta-G solvation = -4366.686561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.16105 -41.70899 -40.88051 -38.62422 -37.67697 -37.49582 -35.64388 -34.77568 -33.56401 -33.04188 -31.67759 -29.11168 -28.47986 -27.33665 -25.59615 -24.50090 -23.78909 -22.83026 -21.66032 -21.26592 -20.34453 -19.50099 -18.77865 -18.56291 -18.27683 -17.80352 -17.49466 -17.38694 -17.15102 -16.54547 -16.25479 -16.17679 -15.36334 -15.26785 -15.19953 -14.88865 -14.78426 -14.69229 -14.46015 -14.18867 -13.96485 -13.80734 -13.58762 -13.36977 -13.20377 -13.15074 -12.93417 -12.86779 -12.61982 -12.36628 -12.26789 -12.03943 -11.97731 -11.90955 -11.80982 -11.79592 -11.73083 -11.52428 -11.46113 -11.41642 -10.83213 -10.78449 -9.84759 -8.31191 -6.36190 1.08449 1.09647 1.23696 1.34418 1.35765 1.37777 1.51420 1.70117 2.08864 2.35434 3.03871 3.17091 3.45544 3.55547 3.67985 3.70069 3.82202 3.84607 3.92238 4.13056 4.23997 4.26174 4.28742 4.30024 4.30686 4.35823 4.45947 4.57282 4.61897 4.66323 4.70082 4.72675 4.77952 4.82543 4.90274 5.01944 5.07421 5.17608 5.20536 5.29232 5.35435 5.35478 5.42791 5.58004 6.10872 6.21468 6.65258 6.65576 6.74120 6.93446 7.28729 8.84487 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002124 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.408808 B =13176.670646 C =14071.167554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.543 6.543 5 C -0.073 4.073 6 C -0.114 4.114 7 C 0.116 3.884 8 N -0.603 5.603 9 C 0.520 3.480 10 O -0.564 6.564 11 C 0.056 3.944 12 H 0.113 0.887 13 C -0.165 4.165 14 O -0.343 6.343 15 C 0.472 3.528 16 O -0.529 6.529 17 C -0.094 4.094 18 C 0.005 3.995 19 C -0.535 4.535 20 H 0.047 0.953 21 C 0.012 3.988 22 N -0.943 5.943 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.281 1.281 26 H -0.256 1.256 27 C 0.093 3.907 28 C -0.125 4.125 29 H 0.132 0.868 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.151 0.849 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.018 0.982 43 H 0.023 0.977 44 H 0.268 0.732 45 H 0.123 0.877 46 H 0.102 0.898 47 H 0.055 0.945 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.694 -14.468 -30.416 38.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.308 3.692 4 O -0.433 6.433 5 C -0.092 4.092 6 C -0.153 4.153 7 C -0.006 4.006 8 N -0.338 5.338 9 C 0.308 3.692 10 O -0.442 6.442 11 C -0.002 4.002 12 H 0.130 0.870 13 C -0.222 4.222 14 O -0.259 6.259 15 C 0.317 3.683 16 O -0.418 6.418 17 C -0.131 4.131 18 C -0.032 4.032 19 C -0.572 4.572 20 H 0.065 0.935 21 C -0.186 4.186 22 N -0.583 5.583 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.206 1.206 26 H -0.180 1.180 27 C -0.028 4.028 28 C -0.164 4.164 29 H 0.150 0.850 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.037 0.963 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.141 0.859 46 H 0.120 0.880 47 H 0.073 0.927 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.895 -13.849 -30.222 37.754 hybrid contribution -0.678 0.160 0.968 1.193 sum -18.572 -13.689 -29.254 37.257 Atomic orbital electron populations 1.23522 0.75143 1.05682 1.02235 1.86494 1.24612 1.32707 1.83517 1.24263 0.92857 0.81084 0.70956 1.90686 1.68160 1.37687 1.46747 1.21175 0.85520 0.98704 1.03757 1.21773 0.95136 0.94700 1.03647 1.21727 0.92061 0.97435 0.89347 1.48116 1.43800 1.14118 1.27744 1.20317 0.79110 0.86803 0.83003 1.90727 1.59893 1.19051 1.74486 1.22733 0.96259 0.91188 0.89991 0.86961 1.22371 1.01022 0.95823 1.03010 1.86669 1.64335 1.55258 1.19685 1.24339 0.79136 0.83462 0.81400 1.90585 1.43790 1.29318 1.78083 1.21357 1.00429 0.99504 0.91811 1.19310 0.96715 0.96180 0.91035 1.21339 1.29320 1.13380 0.93199 0.93455 1.25866 0.95963 0.99643 0.97149 1.70033 1.42257 1.41495 1.04553 0.85752 0.80183 0.79724 0.77617 1.18894 1.20615 1.17954 1.22496 0.94075 0.80346 1.05930 1.22044 0.95449 1.03260 0.95600 0.84995 0.92643 0.91959 0.83191 0.93267 0.88891 0.90509 0.87260 0.90838 0.90991 0.85881 0.86782 0.87563 0.96343 0.95902 0.92292 0.85869 0.87985 0.92654 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.36 -4.18 10.44 -51.37 -0.54 -4.72 16 3 C 0.46 6.67 7.25 71.23 0.52 7.18 16 4 O -0.54 -11.98 15.73 21.96 0.35 -11.63 16 5 C -0.07 -0.60 2.59 -11.52 -0.03 -0.63 16 6 C -0.11 -1.42 4.65 30.67 0.14 -1.28 16 7 C 0.12 1.46 6.43 86.37 0.56 2.02 16 8 N -0.60 -8.96 2.97 -818.06 -2.43 -11.38 16 9 C 0.52 12.75 7.12 87.66 0.62 13.37 16 10 O -0.56 -19.23 15.92 15.71 0.25 -18.98 16 11 C 0.06 1.37 2.14 29.85 0.06 1.44 16 12 H 0.11 2.63 6.46 -2.39 -0.02 2.62 16 13 C -0.17 -2.73 9.12 71.98 0.66 -2.08 16 14 O -0.34 -11.39 9.42 -45.01 -0.42 -11.81 16 15 C 0.47 17.30 7.93 71.23 0.56 17.87 16 16 O -0.53 -20.81 15.20 21.94 0.33 -20.48 16 17 C -0.09 -3.71 5.75 29.85 0.17 -3.54 16 18 C 0.01 0.25 3.33 29.85 0.10 0.35 16 19 C -0.53 -30.73 9.66 25.60 0.25 -30.49 16 20 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 21 C 0.01 0.68 5.47 84.65 0.46 1.15 16 22 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 23 Si 0.94 45.32 27.47 68.60 1.88 47.20 16 24 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 26 H -0.26 -11.93 6.54 99.48 0.65 -11.27 16 27 C 0.09 0.60 5.00 86.51 0.43 1.03 16 28 C -0.13 -0.90 5.31 30.82 0.16 -0.73 16 29 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.57 8.13 -2.39 -0.02 0.55 16 31 H 0.06 0.54 8.13 -2.39 -0.02 0.53 16 32 H 0.15 0.22 8.14 -2.38 -0.02 0.20 16 33 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 34 H 0.09 1.07 8.07 -2.39 -0.02 1.05 16 35 H 0.08 1.42 7.01 -2.39 -0.02 1.40 16 36 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 0.96 5.39 -2.39 -0.01 0.95 16 40 H 0.11 4.18 8.14 -2.38 -0.02 4.16 16 41 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 42 H 0.02 0.91 7.15 -2.38 -0.02 0.89 16 43 H 0.02 1.09 7.53 -2.39 -0.02 1.07 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.10 0.67 4.65 -2.38 -0.01 0.66 16 47 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.12 0.36 8.08 -2.39 -0.02 0.34 16 Total: -1.00 -83.69 392.49 6.50 -77.19 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.91 Total: 6.15 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.87 Total: 7.10 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -2.13 Total: -70.02 kcal Atomic # 8 Polarization: -67.59 SS G_CDS: -0.03 Total: -67.62 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -83.69 6.50 -77.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.399 kcal (2) G-P(sol) polarization free energy of solvation -83.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds