Wall clock time and date at job start Wed Apr 1 2020 00:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00465 * 2 1 4 4 O 1.20829 * 119.99606 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00345 * 179.97438 * 3 2 1 6 6 C 1.53346 * 109.40665 * 300.11911 * 5 3 2 7 7 C 1.53195 * 109.14901 * 178.68109 * 6 5 3 8 8 N 1.46919 * 108.89273 * 54.57640 * 7 6 5 9 9 C 1.34780 * 120.63395 * 126.29715 * 8 7 6 10 10 O 1.21284 * 119.99750 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00162 * 180.02562 * 9 8 7 12 12 H 1.08997 * 109.47323 * 54.99936 * 11 9 8 13 13 C 1.53002 * 109.47042 * 294.99910 * 11 9 8 14 14 O 1.45202 * 109.46728 * 175.00337 * 11 9 8 15 15 C 1.34238 * 116.99494 * 209.99568 * 14 11 9 16 16 O 1.20819 * 120.00107 * 0.02562 * 15 14 11 17 17 C 1.50708 * 119.99572 * 179.97438 * 15 14 11 18 18 C 1.52998 * 109.46509 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46817 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00294 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99766 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00329 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47184 * 89.99481 * 23 21 19 25 25 H 1.48500 * 109.47041 * 209.99469 * 23 21 19 26 26 H 1.48497 * 109.46824 * 329.99560 * 23 21 19 27 27 C 1.46933 * 118.74003 * 306.32349 * 8 7 6 28 28 C 1.53034 * 109.45957 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47166 * 300.00563 * 1 2 3 31 31 H 1.08998 * 109.46692 * 60.00272 * 1 2 3 32 32 H 1.09000 * 109.45654 * 60.02350 * 5 3 2 33 33 H 1.08997 * 109.68637 * 58.71318 * 6 5 3 34 34 H 1.09002 * 109.47277 * 298.51574 * 6 5 3 35 35 H 1.09002 * 109.58720 * 294.71670 * 7 6 5 36 36 H 1.08996 * 109.58651 * 174.43567 * 7 6 5 37 37 H 1.08997 * 109.47083 * 300.00173 * 13 11 9 38 38 H 1.08998 * 109.47169 * 60.00114 * 13 11 9 39 39 H 1.09003 * 109.47231 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47072 * 300.00132 * 17 15 14 41 41 H 1.08993 * 109.46758 * 60.00551 * 17 15 14 42 42 H 1.09000 * 109.47406 * 299.99737 * 18 17 15 43 43 H 1.09000 * 109.46933 * 60.00696 * 18 17 15 44 44 H 0.97001 * 120.00205 * 180.02562 * 22 21 19 45 45 H 1.08994 * 109.58580 * 173.39910 * 27 8 7 46 46 H 1.09006 * 109.57831 * 293.67403 * 27 8 7 47 47 H 1.08994 * 109.50232 * 61.42124 * 28 5 3 48 48 H 1.09007 * 109.52628 * 301.33785 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1127 0.5769 1.2520 7 6 5.6435 0.6317 1.2300 8 7 6.0675 2.0307 1.0837 9 6 6.9329 2.5811 1.9582 10 8 7.3697 1.9202 2.8765 11 6 7.3577 4.0177 1.7950 12 1 6.4748 4.6560 1.7602 13 6 8.1492 4.1709 0.4946 14 8 8.1921 4.4062 2.9180 15 6 8.1555 5.6965 3.2867 16 8 7.4494 6.4752 2.6910 17 6 8.9943 6.1734 4.4443 18 6 8.7688 7.6720 4.6541 19 6 9.6080 8.1491 5.8113 20 1 10.2395 7.4531 6.3435 21 6 9.5698 9.4741 6.1906 22 7 8.8013 10.3218 5.5422 23 14 10.6107 10.0656 7.6245 24 1 11.9383 10.5045 7.1246 25 1 9.9317 11.2052 8.2921 26 1 10.7894 8.9575 8.5967 27 6 5.5296 2.8188 -0.0337 28 6 4.0000 2.7424 -0.0002 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.9562 0.7808 -0.8894 33 1 3.7860 -0.4628 1.2647 34 1 3.7432 1.0858 2.1423 35 1 6.0181 0.0466 0.3901 36 1 6.0370 0.2262 2.1621 37 1 9.0321 3.5326 0.5293 38 1 7.5229 3.8792 -0.3485 39 1 8.4569 5.2099 0.3767 40 1 8.7085 5.6334 5.3469 41 1 10.0472 5.9906 4.2296 42 1 9.0544 8.2124 3.7516 43 1 7.7158 7.8543 4.8690 44 1 8.7746 11.2541 5.8088 45 1 5.8461 3.8570 0.0658 46 1 5.8970 2.4136 -0.9766 47 1 3.6314 3.2312 0.9016 48 1 3.5912 3.2427 -0.8782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812619095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:57 Heat of formation + Delta-G solvation = -214.874858 kcal Electronic energy + Delta-G solvation = -29919.767448 eV Core-core repulsion = 25553.935759 eV Total energy + Delta-G solvation = -4365.831688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32519 -40.67150 -39.70411 -37.79695 -36.82601 -36.17452 -33.99556 -33.57959 -32.33066 -31.30951 -30.77069 -28.58524 -26.68837 -26.15423 -24.61779 -23.84232 -22.66240 -21.82107 -20.81455 -19.84960 -19.54476 -18.16523 -17.76480 -17.32365 -16.99203 -16.80344 -16.46673 -16.20731 -15.84401 -15.41903 -15.13491 -14.77822 -14.47262 -14.40788 -14.28858 -13.91811 -13.81619 -13.63189 -13.14747 -13.01812 -12.80343 -12.61004 -12.52650 -12.38790 -12.25746 -12.04305 -11.80127 -11.64410 -11.35401 -11.25224 -11.24039 -11.20365 -10.95216 -10.79631 -10.66150 -10.60099 -10.04410 -9.98418 -9.82247 -9.54905 -9.17118 -9.09678 -8.36830 -6.00792 -4.05431 1.71996 2.17288 2.25911 2.37436 2.76958 3.19874 3.32920 3.39173 3.42777 3.94867 4.02244 4.18419 4.25829 4.45277 4.46123 4.58203 4.64474 4.71863 4.72681 4.73818 4.80964 4.85451 5.01323 5.05463 5.11311 5.13776 5.24341 5.29857 5.34783 5.43378 5.52969 5.55253 5.60729 5.71062 5.89849 5.91834 6.07491 6.13807 6.21952 6.58744 6.87799 6.94824 7.26325 7.66949 7.73467 7.87029 7.98456 8.22295 8.38645 9.01497 9.58624 11.10221 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.001929 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.337984 B =14514.452133 C =15081.485760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.502 6.502 5 C -0.078 4.078 6 C -0.127 4.127 7 C 0.115 3.885 8 N -0.615 5.615 9 C 0.524 3.476 10 O -0.512 6.512 11 C 0.065 3.935 12 H 0.108 0.892 13 C -0.172 4.172 14 O -0.337 6.337 15 C 0.458 3.542 16 O -0.505 6.505 17 C -0.102 4.102 18 C 0.034 3.966 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.099 3.901 28 C -0.123 4.123 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.262 0.738 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 -24.293 -17.190 32.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.389 6.389 5 C -0.098 4.098 6 C -0.165 4.165 7 C -0.007 4.007 8 N -0.351 5.351 9 C 0.311 3.689 10 O -0.386 6.386 11 C 0.006 3.994 12 H 0.126 0.874 13 C -0.229 4.229 14 O -0.254 6.254 15 C 0.302 3.698 16 O -0.391 6.391 17 C -0.140 4.140 18 C -0.004 4.004 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.023 4.023 28 C -0.162 4.162 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.869 -23.937 -16.868 31.987 hybrid contribution -0.012 0.547 0.521 0.756 sum -12.881 -23.390 -16.347 31.308 Atomic orbital electron populations 1.23294 0.76118 1.03820 1.02697 1.86497 1.23592 1.33430 1.84028 1.23782 0.91974 0.81392 0.72228 1.90703 1.67128 1.36344 1.44705 1.21155 0.87097 0.99409 1.02106 1.22017 0.95997 1.01954 0.96546 1.21582 0.93105 0.81717 1.04268 1.48022 1.45613 1.12761 1.28746 1.20302 0.78458 0.88594 0.81533 1.90734 1.53919 1.62842 1.31075 1.22274 0.96364 0.93300 0.87428 0.87395 1.22325 1.01350 1.04686 0.94524 1.86740 1.61485 1.30342 1.46799 1.24968 0.81100 0.78828 0.84924 1.90618 1.39476 1.54922 1.54089 1.21798 0.98306 1.01823 0.92031 1.19029 0.98213 0.85526 0.97597 1.21161 1.25906 0.94296 1.15258 0.92247 1.25018 0.95589 0.96847 0.96885 1.69993 1.38524 1.03796 1.40520 0.86532 0.80247 0.78430 0.82414 1.20601 1.21207 1.19774 1.22049 0.93041 0.97533 0.89716 1.21898 0.95267 0.93825 1.05171 0.87965 0.91780 0.91829 0.86860 0.88916 0.90575 0.90709 0.88039 0.90832 0.90055 0.90167 0.88727 0.88746 0.95541 0.95561 0.92864 0.88193 0.90217 0.89994 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.60 10.45 -39.26 -0.41 -3.01 16 3 C 0.46 3.84 7.26 36.00 0.26 4.10 16 4 O -0.50 -5.73 15.73 -18.75 -0.29 -6.03 16 5 C -0.08 -0.46 2.59 -91.58 -0.24 -0.70 16 6 C -0.13 -0.77 5.33 -26.45 -0.14 -0.91 16 7 C 0.12 0.82 6.42 -3.71 -0.02 0.79 16 8 N -0.61 -5.53 2.97 -172.77 -0.51 -6.04 16 9 C 0.52 6.92 7.12 -10.98 -0.08 6.85 16 10 O -0.51 -8.71 15.92 -14.06 -0.22 -8.94 16 11 C 0.07 0.90 2.14 -27.88 -0.06 0.84 16 12 H 0.11 1.48 6.45 -51.93 -0.33 1.15 16 13 C -0.17 -1.82 9.12 37.16 0.34 -1.48 16 14 O -0.34 -5.97 9.42 -45.91 -0.43 -6.41 16 15 C 0.46 9.15 7.93 36.01 0.29 9.44 16 16 O -0.50 -11.13 15.20 -18.74 -0.28 -11.41 16 17 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 18 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 19 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 23 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.10 0.62 4.97 -3.71 -0.02 0.61 16 28 C -0.12 -0.82 4.66 -26.62 -0.12 -0.95 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 8.13 -51.93 -0.42 -0.10 16 32 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.90 7.00 -51.93 -0.36 0.54 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.58 5.41 -51.93 -0.28 0.30 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 42 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.10 0.66 4.66 -51.93 -0.24 0.42 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 48 H 0.09 0.55 8.07 -51.92 -0.42 0.13 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -37.02 396.12 -7.41 -44.43 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.51 Total: -3.52 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 0.58 Total: 4.70 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.22 Total: -32.38 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.65 Total: -35.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.02 -7.41 -44.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.445 kcal (2) G-P(sol) polarization free energy of solvation -37.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds