Wall clock time and date at job start Wed Apr 1 2020 00:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00465 * 2 1 4 4 O 1.20829 * 119.99606 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00345 * 179.97438 * 3 2 1 6 6 C 1.53346 * 109.40665 * 300.11911 * 5 3 2 7 7 C 1.53195 * 109.14901 * 178.68109 * 6 5 3 8 8 N 1.46919 * 108.89273 * 54.57640 * 7 6 5 9 9 C 1.34780 * 120.63395 * 126.29715 * 8 7 6 10 10 O 1.21284 * 119.99750 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00162 * 180.02562 * 9 8 7 12 12 H 1.08997 * 109.47323 * 54.99936 * 11 9 8 13 13 C 1.53002 * 109.47042 * 294.99910 * 11 9 8 14 14 O 1.45202 * 109.46728 * 175.00337 * 11 9 8 15 15 C 1.34238 * 116.99494 * 209.99568 * 14 11 9 16 16 O 1.20819 * 120.00107 * 0.02562 * 15 14 11 17 17 C 1.50708 * 119.99572 * 179.97438 * 15 14 11 18 18 C 1.52998 * 109.46509 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46817 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99968 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00294 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99766 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00329 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47184 * 89.99481 * 23 21 19 25 25 H 1.48500 * 109.47041 * 209.99469 * 23 21 19 26 26 H 1.48497 * 109.46824 * 329.99560 * 23 21 19 27 27 C 1.46933 * 118.74003 * 306.32349 * 8 7 6 28 28 C 1.53034 * 109.45957 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47166 * 300.00563 * 1 2 3 31 31 H 1.08998 * 109.46692 * 60.00272 * 1 2 3 32 32 H 1.09000 * 109.45654 * 60.02350 * 5 3 2 33 33 H 1.08997 * 109.68637 * 58.71318 * 6 5 3 34 34 H 1.09002 * 109.47277 * 298.51574 * 6 5 3 35 35 H 1.09002 * 109.58720 * 294.71670 * 7 6 5 36 36 H 1.08996 * 109.58651 * 174.43567 * 7 6 5 37 37 H 1.08997 * 109.47083 * 300.00173 * 13 11 9 38 38 H 1.08998 * 109.47169 * 60.00114 * 13 11 9 39 39 H 1.09003 * 109.47231 * 180.02562 * 13 11 9 40 40 H 1.09000 * 109.47072 * 300.00132 * 17 15 14 41 41 H 1.08993 * 109.46758 * 60.00551 * 17 15 14 42 42 H 1.09000 * 109.47406 * 299.99737 * 18 17 15 43 43 H 1.09000 * 109.46933 * 60.00696 * 18 17 15 44 44 H 0.97001 * 120.00205 * 180.02562 * 22 21 19 45 45 H 1.08994 * 109.58580 * 173.39910 * 27 8 7 46 46 H 1.09006 * 109.57831 * 293.67403 * 27 8 7 47 47 H 1.08994 * 109.50232 * 61.42124 * 28 5 3 48 48 H 1.09007 * 109.52628 * 301.33785 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1127 0.5769 1.2520 7 6 5.6435 0.6317 1.2300 8 7 6.0675 2.0307 1.0837 9 6 6.9329 2.5811 1.9582 10 8 7.3697 1.9202 2.8765 11 6 7.3577 4.0177 1.7950 12 1 6.4748 4.6560 1.7602 13 6 8.1492 4.1709 0.4946 14 8 8.1921 4.4062 2.9180 15 6 8.1555 5.6965 3.2867 16 8 7.4494 6.4752 2.6910 17 6 8.9943 6.1734 4.4443 18 6 8.7688 7.6720 4.6541 19 6 9.6080 8.1491 5.8113 20 1 10.2395 7.4531 6.3435 21 6 9.5698 9.4741 6.1906 22 7 8.8013 10.3218 5.5422 23 14 10.6107 10.0656 7.6245 24 1 11.9383 10.5045 7.1246 25 1 9.9317 11.2052 8.2921 26 1 10.7894 8.9575 8.5967 27 6 5.5296 2.8188 -0.0337 28 6 4.0000 2.7424 -0.0002 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.9562 0.7808 -0.8894 33 1 3.7860 -0.4628 1.2647 34 1 3.7432 1.0858 2.1423 35 1 6.0181 0.0466 0.3901 36 1 6.0370 0.2262 2.1621 37 1 9.0321 3.5326 0.5293 38 1 7.5229 3.8792 -0.3485 39 1 8.4569 5.2099 0.3767 40 1 8.7085 5.6334 5.3469 41 1 10.0472 5.9906 4.2296 42 1 9.0544 8.2124 3.7516 43 1 7.7158 7.8543 4.8690 44 1 8.7746 11.2541 5.8088 45 1 5.8461 3.8570 0.0658 46 1 5.8970 2.4136 -0.9766 47 1 3.6314 3.2312 0.9016 48 1 3.5912 3.2427 -0.8782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812619095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:56 Heat of formation + Delta-G solvation = -237.620467 kcal Electronic energy + Delta-G solvation = -29920.753771 eV Core-core repulsion = 25553.935759 eV Total energy + Delta-G solvation = -4366.818012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.15687 -41.69958 -40.87598 -38.62360 -37.67784 -37.46212 -35.66505 -34.81508 -33.38665 -32.85067 -31.73193 -29.11391 -28.12953 -27.32158 -25.66108 -24.55355 -24.04552 -22.86269 -21.68969 -21.29891 -20.34657 -19.30903 -18.73735 -18.36566 -18.26389 -17.68638 -17.53018 -17.44395 -17.09846 -16.50045 -16.49045 -16.18884 -15.33965 -15.27287 -15.18812 -14.76933 -14.69571 -14.41693 -14.39410 -14.28120 -13.89874 -13.70081 -13.57180 -13.36901 -13.25550 -13.12462 -12.88926 -12.82768 -12.58209 -12.52296 -12.34714 -12.04292 -11.97115 -11.91045 -11.79133 -11.77445 -11.74720 -11.50701 -11.45584 -11.29975 -10.83723 -10.57914 -9.84919 -8.20544 -6.34062 1.09104 1.10941 1.24460 1.33676 1.43530 1.45373 1.56705 1.70514 2.08921 2.43269 3.13182 3.16580 3.41507 3.62659 3.67441 3.69202 3.80928 3.87484 3.90035 4.09651 4.24810 4.27812 4.29280 4.30126 4.38067 4.41629 4.48898 4.57001 4.61264 4.64961 4.70040 4.74016 4.77999 4.86599 4.90383 5.02149 5.04628 5.18041 5.25410 5.35505 5.42980 5.46336 5.54135 5.79626 6.08733 6.12909 6.65744 6.70647 6.83671 6.92563 7.35912 8.91976 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.001929 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.337984 B =14514.452133 C =15081.485760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.541 6.541 5 C -0.073 4.073 6 C -0.119 4.119 7 C 0.113 3.887 8 N -0.603 5.603 9 C 0.524 3.476 10 O -0.560 6.560 11 C 0.054 3.946 12 H 0.105 0.895 13 C -0.164 4.164 14 O -0.341 6.341 15 C 0.468 3.532 16 O -0.533 6.533 17 C -0.095 4.095 18 C 0.041 3.959 19 C -0.546 4.546 20 H 0.075 0.925 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.974 3.026 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.259 1.259 27 C 0.095 3.905 28 C -0.121 4.121 29 H 0.132 0.868 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.151 0.849 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.117 0.883 42 H -0.005 1.005 43 H -0.010 1.010 44 H 0.264 0.736 45 H 0.096 0.904 46 H 0.123 0.877 47 H 0.051 0.949 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -26.568 -18.406 34.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.431 6.431 5 C -0.092 4.092 6 C -0.157 4.157 7 C -0.008 4.008 8 N -0.337 5.337 9 C 0.311 3.689 10 O -0.438 6.438 11 C -0.004 4.004 12 H 0.123 0.877 13 C -0.221 4.221 14 O -0.258 6.258 15 C 0.312 3.688 16 O -0.422 6.422 17 C -0.133 4.133 18 C 0.003 3.997 19 C -0.584 4.584 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.574 5.574 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.183 1.183 27 C -0.026 4.026 28 C -0.159 4.159 29 H 0.150 0.850 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.169 0.831 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.014 0.986 43 H 0.009 0.991 44 H 0.073 0.927 45 H 0.114 0.886 46 H 0.141 0.859 47 H 0.070 0.930 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.115 -26.269 -18.126 34.138 hybrid contribution -0.404 1.159 0.800 1.465 sum -12.519 -25.110 -17.326 32.976 Atomic orbital electron populations 1.23523 0.75119 1.05680 1.02263 1.86494 1.24653 1.32791 1.83548 1.24257 0.92848 0.81082 0.70994 1.90693 1.68128 1.37608 1.46667 1.21232 0.85516 0.99008 1.03402 1.21950 0.95176 1.02919 0.95646 1.21792 0.93535 0.80589 1.04870 1.48101 1.43766 1.13727 1.28129 1.20192 0.79085 0.87958 0.81685 1.90714 1.56228 1.63666 1.33144 1.22708 0.96305 0.93928 0.87444 0.87713 1.22350 1.01814 1.04066 0.93907 1.86666 1.62129 1.28525 1.48443 1.24556 0.80379 0.79425 0.84393 1.90605 1.40653 1.55913 1.55042 1.21541 0.99992 0.98252 0.93473 1.18792 0.95762 0.89111 0.95989 1.21634 1.26080 0.94972 1.15666 0.90672 1.26076 0.96884 0.97107 1.00008 1.70150 1.40387 1.04263 1.42563 0.85314 0.78321 0.78014 0.78573 1.19543 1.21068 1.18260 1.22329 0.92641 0.97425 0.90237 1.21845 0.95446 0.94464 1.04172 0.84984 0.92661 0.91903 0.83140 0.86820 0.93102 0.87046 0.90047 0.90442 0.86089 0.91468 0.87231 0.86494 0.98615 0.99110 0.92707 0.88603 0.85947 0.93032 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.57 10.45 -51.43 -0.54 -5.10 16 3 C 0.46 7.09 7.26 71.23 0.52 7.61 16 4 O -0.54 -12.33 15.73 21.96 0.35 -11.99 16 5 C -0.07 -0.67 2.59 -11.41 -0.03 -0.70 16 6 C -0.12 -1.21 5.33 30.78 0.16 -1.04 16 7 C 0.11 1.34 6.42 86.36 0.55 1.89 16 8 N -0.60 -9.71 2.97 -818.90 -2.44 -12.15 16 9 C 0.52 13.57 7.12 87.66 0.62 14.19 16 10 O -0.56 -19.23 15.92 15.71 0.25 -18.98 16 11 C 0.05 1.49 2.14 29.85 0.06 1.55 16 12 H 0.11 2.93 6.45 -2.39 -0.02 2.92 16 13 C -0.16 -3.23 9.12 71.98 0.66 -2.57 16 14 O -0.34 -12.22 9.42 -45.15 -0.43 -12.64 16 15 C 0.47 19.12 7.93 71.24 0.56 19.68 16 16 O -0.53 -24.44 15.20 21.98 0.33 -24.11 16 17 C -0.10 -4.04 5.75 29.85 0.17 -3.87 16 18 C 0.04 2.24 4.26 29.85 0.13 2.37 16 19 C -0.55 -31.04 9.11 25.60 0.23 -30.80 16 20 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 21 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 22 N -0.93 -58.30 13.29 21.45 0.28 -58.01 16 23 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 27 C 0.09 0.92 4.97 86.36 0.43 1.35 16 28 C -0.12 -1.42 4.66 30.67 0.14 -1.27 16 29 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.61 8.13 -2.39 -0.02 0.59 16 31 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 32 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.11 0.72 8.09 -2.39 -0.02 0.70 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 1.37 7.00 -2.39 -0.02 1.35 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.12 1.35 5.41 -2.39 -0.01 1.34 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 41 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 42 H 0.00 -0.28 8.10 -2.39 -0.02 -0.30 16 43 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 44 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.10 1.06 4.66 -2.39 -0.01 1.05 16 46 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 47 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 48 H 0.10 1.02 8.07 -2.38 -0.02 1.00 16 Total: -1.00 -84.69 396.12 6.68 -78.01 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.96 Total: 8.49 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.88 Total: 10.13 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -2.15 Total: -70.16 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -0.03 Total: -72.82 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -84.69 6.68 -78.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.614 kcal (2) G-P(sol) polarization free energy of solvation -84.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds