Wall clock time and date at job start Wed Apr 1 2020 00:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47420 * 2 1 4 4 O 1.45197 * 109.47451 * 239.99463 * 2 1 3 5 5 C 1.34232 * 116.99832 * 90.00041 * 4 2 1 6 6 O 1.20824 * 120.00179 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99653 * 180.02562 * 5 4 2 8 8 H 1.08999 * 109.47270 * 60.00562 * 7 5 4 9 9 C 1.52996 * 109.47374 * 299.99950 * 7 5 4 10 10 C 1.52998 * 109.47033 * 180.02562 * 9 7 5 11 11 C 1.53005 * 109.47015 * 60.00449 * 10 9 7 12 12 C 1.52996 * 109.46854 * 299.99661 * 11 10 9 13 13 H 1.09007 * 109.46895 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47320 * 300.00018 * 12 11 10 15 15 O 1.20825 * 119.99876 * 119.99897 * 14 12 11 16 16 O 1.34230 * 119.99756 * 300.00311 * 14 12 11 17 17 C 1.52998 * 109.46614 * 180.02562 * 7 5 4 18 18 C 1.50710 * 109.46671 * 119.99556 * 2 1 3 19 19 O 1.21284 * 119.99561 * 104.54190 * 18 2 1 20 20 N 1.34773 * 120.00161 * 284.54151 * 18 2 1 21 21 C 1.46506 * 119.99912 * 354.65523 * 20 18 2 22 22 C 1.46495 * 120.00232 * 174.65346 * 20 18 2 23 23 C 1.50709 * 109.47043 * 89.99725 * 22 20 18 24 24 H 1.08004 * 119.99890 * 0.02562 * 23 22 20 25 25 C 1.37878 * 120.00080 * 180.02562 * 23 22 20 26 26 N 1.31515 * 120.00027 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99988 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47398 * 89.99564 * 27 25 23 29 29 H 1.48496 * 109.47305 * 210.00184 * 27 25 23 30 30 H 1.48506 * 109.46960 * 329.99860 * 27 25 23 31 31 H 1.09003 * 109.47255 * 174.89968 * 1 2 3 32 32 H 1.09003 * 109.47480 * 294.89743 * 1 2 3 33 33 H 1.09001 * 109.47307 * 54.90361 * 1 2 3 34 34 H 1.08999 * 109.47421 * 300.00518 * 9 7 5 35 35 H 1.09007 * 109.46895 * 60.00448 * 9 7 5 36 36 H 1.09006 * 109.46865 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47343 * 300.00086 * 10 9 7 38 38 H 1.08999 * 109.46977 * 59.99774 * 11 10 9 39 39 H 1.08999 * 109.46827 * 179.97438 * 11 10 9 40 40 H 0.96697 * 116.99559 * 180.02562 * 16 14 12 41 41 H 1.09006 * 109.47441 * 299.99987 * 17 7 5 42 42 H 1.09002 * 109.47208 * 60.00680 * 17 7 5 43 43 H 1.08997 * 109.46652 * 275.11232 * 21 20 18 44 44 H 1.09002 * 109.47141 * 35.11566 * 21 20 18 45 45 H 1.08991 * 109.46753 * 155.11585 * 21 20 18 46 46 H 1.09008 * 109.47208 * 330.00324 * 22 20 18 47 47 H 1.09000 * 109.47791 * 209.99857 * 22 20 18 48 48 H 0.96998 * 119.99904 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9982 1.2517 -2.2504 7 6 2.7184 -0.5775 -3.5493 8 1 2.0088 -1.3372 -3.8773 9 6 4.0783 -1.2283 -3.2889 10 6 4.5873 -1.8789 -4.5767 11 6 4.7323 -0.8123 -5.6641 12 6 3.3724 -0.1615 -5.9246 13 1 3.4757 0.5987 -6.6989 14 6 2.3915 -1.2117 -6.3786 15 8 1.3883 -1.4187 -5.7378 16 8 2.6325 -1.9173 -7.4948 17 6 2.8637 0.4887 -4.6369 18 6 2.0322 -0.7104 1.2306 19 8 2.4829 -1.8328 1.1413 20 7 1.9805 -0.0984 2.4303 21 6 1.5461 1.2978 2.5223 22 6 2.3586 -0.8292 3.6423 23 6 3.8332 -0.6509 3.8970 24 1 4.4291 -0.0526 3.2236 25 6 4.4217 -1.2515 4.9898 26 7 5.7085 -1.0954 5.2123 27 14 3.3913 -2.2869 6.1541 28 1 3.3893 -3.6980 5.6917 29 1 3.9663 -2.2147 7.5213 30 1 1.9989 -1.7709 6.1748 31 1 -0.3634 -1.0236 -0.0914 32 1 -0.3634 0.4326 0.9322 33 1 -0.3634 0.5909 -0.8408 34 1 4.7878 -0.4686 -2.9609 35 1 3.9751 -1.9878 -2.5139 36 1 5.5561 -2.3429 -4.3910 37 1 3.8780 -2.6384 -4.9050 38 1 5.4417 -0.0527 -5.3357 39 1 5.0954 -1.2757 -6.5814 40 1 1.9743 -2.5796 -7.7461 41 1 1.8950 0.9528 -4.8227 42 1 3.5735 1.2481 -4.3088 43 1 2.3957 1.9554 2.3384 44 1 0.7722 1.4872 1.7785 45 1 1.1474 1.4892 3.5184 46 1 2.1380 -1.8887 3.5115 47 1 1.7940 -0.4427 4.4908 48 1 6.1224 -1.5176 5.9812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827817101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:29 Heat of formation + Delta-G solvation = -219.266089 kcal Electronic energy + Delta-G solvation = -30984.705944 eV Core-core repulsion = 26618.683837 eV Total energy + Delta-G solvation = -4366.022106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44079 -40.52451 -39.11014 -37.92028 -36.41334 -36.29609 -34.97967 -32.83683 -32.21270 -31.41554 -31.18323 -28.37507 -26.19284 -25.13373 -24.88087 -23.88533 -22.20805 -22.06032 -20.61817 -19.97915 -18.84695 -18.31137 -17.86076 -16.98184 -16.90013 -16.46865 -16.37934 -16.02116 -15.72479 -15.41576 -14.96671 -14.68332 -14.38179 -13.98170 -13.90173 -13.61400 -13.48818 -13.12633 -12.81298 -12.80020 -12.65677 -12.43178 -12.39610 -12.33642 -12.20105 -12.02334 -11.87076 -11.50766 -11.46114 -11.42903 -11.30565 -11.06105 -10.94188 -10.68029 -10.55081 -10.54481 -10.40911 -10.18359 -10.15020 -9.55612 -8.99308 -8.59473 -7.78048 -6.08936 -4.07887 1.83050 2.23687 2.50217 2.65403 3.20108 3.28643 3.34333 3.36221 3.76194 4.18562 4.24188 4.38758 4.39569 4.62465 4.72150 4.75701 4.85429 4.88916 4.99332 5.04964 5.09505 5.10770 5.18084 5.24022 5.34817 5.43448 5.53024 5.62719 5.63425 5.66392 5.68559 5.74219 5.82451 5.85357 5.97235 6.00933 6.07271 6.15874 6.22690 6.48208 6.64862 6.87209 7.25258 7.52694 7.58612 7.78566 8.12009 8.45149 8.83888 8.95119 9.50495 11.04553 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002550 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.969776 B =10977.383635 C =11655.650079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.069 3.931 3 H 0.104 0.896 4 O -0.323 6.323 5 C 0.469 3.531 6 O -0.513 6.513 7 C -0.090 4.090 8 H 0.130 0.870 9 C -0.118 4.118 10 C -0.122 4.122 11 C -0.115 4.115 12 C -0.078 4.078 13 H 0.116 0.884 14 C 0.483 3.517 15 O -0.509 6.509 16 O -0.516 6.516 17 C -0.090 4.090 18 C 0.511 3.489 19 O -0.515 6.515 20 N -0.593 5.593 21 C 0.076 3.924 22 C 0.218 3.782 23 C -0.529 4.529 24 H 0.074 0.926 25 C 0.072 3.928 26 N -0.897 5.897 27 Si 0.877 3.123 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.266 1.266 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.410 0.590 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.534 3.185 -24.393 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 H 0.122 0.878 4 O -0.238 6.238 5 C 0.313 3.687 6 O -0.402 6.402 7 C -0.109 4.109 8 H 0.148 0.852 9 C -0.156 4.156 10 C -0.159 4.159 11 C -0.152 4.152 12 C -0.097 4.097 13 H 0.134 0.866 14 C 0.325 3.675 15 O -0.397 6.397 16 O -0.328 6.328 17 C -0.127 4.127 18 C 0.295 3.705 19 O -0.390 6.390 20 N -0.327 5.327 21 C -0.068 4.068 22 C 0.098 3.902 23 C -0.567 4.567 24 H 0.092 0.908 25 C -0.130 4.130 26 N -0.535 5.535 27 Si 0.704 3.296 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.191 1.191 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.268 0.732 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.199 3.114 -23.947 25.199 hybrid contribution -0.896 -0.706 0.631 1.304 sum -8.095 2.408 -23.316 24.798 Atomic orbital electron populations 1.22175 0.92324 1.04004 1.03710 1.22603 0.95742 0.97639 0.82940 0.87793 1.86630 1.76321 1.41423 1.19464 1.23736 0.73834 0.85768 0.85407 1.90618 1.48674 1.16612 1.84283 1.21348 1.00235 0.99966 0.89365 0.85237 1.21615 0.94123 1.01142 0.98681 1.21602 1.02235 0.97583 0.94500 1.21632 0.94312 0.99177 1.00090 1.21134 0.94239 0.95179 0.99160 0.86608 1.23555 0.85778 0.80796 0.77352 1.90685 1.28676 1.66033 1.54283 1.84533 1.54172 1.51021 1.43055 1.21346 1.03437 0.96794 0.91115 1.19795 0.80005 0.86961 0.83745 1.90707 1.44115 1.19144 1.85006 1.47743 1.65233 1.12429 1.07264 1.21848 0.99308 0.82942 1.02681 1.19735 0.96883 0.92687 0.80915 1.21312 0.91912 1.32557 1.10937 0.90755 1.24861 0.94873 0.95850 0.97450 1.69898 1.10203 1.44371 1.29061 0.86844 0.80780 0.81591 0.80422 1.19861 1.21029 1.19067 0.90779 0.89738 0.91076 0.90856 0.89479 0.90255 0.92027 0.89722 0.90177 0.73160 0.89973 0.89139 0.92584 0.92159 0.90636 0.94557 0.94863 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.20 37.16 0.34 -1.88 16 2 C 0.07 1.18 2.14 -27.88 -0.06 1.12 16 3 H 0.10 1.69 6.34 -51.93 -0.33 1.36 16 4 O -0.32 -5.67 9.37 -45.76 -0.43 -6.10 16 5 C 0.47 7.16 7.23 36.01 0.26 7.42 16 6 O -0.51 -8.36 15.20 -18.75 -0.28 -8.65 16 7 C -0.09 -1.08 2.33 -91.77 -0.21 -1.29 16 8 H 0.13 1.64 5.52 -51.93 -0.29 1.35 16 9 C -0.12 -1.29 5.13 -26.73 -0.14 -1.43 16 10 C -0.12 -0.99 5.70 -26.73 -0.15 -1.15 16 11 C -0.11 -0.71 5.39 -26.73 -0.14 -0.86 16 12 C -0.08 -0.54 3.11 -91.80 -0.29 -0.83 16 13 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 14 C 0.48 3.99 6.11 36.01 0.22 4.21 16 15 O -0.51 -5.83 14.42 -18.75 -0.27 -6.10 16 16 O -0.52 -3.02 13.33 -39.26 -0.52 -3.55 16 17 C -0.09 -0.84 3.66 -26.76 -0.10 -0.94 16 18 C 0.51 10.94 6.95 -10.98 -0.08 10.86 16 19 O -0.51 -13.28 16.21 -13.58 -0.22 -13.50 16 20 N -0.59 -12.43 2.86 -182.95 -0.52 -12.95 16 21 C 0.08 1.18 9.84 59.85 0.59 1.77 16 22 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 23 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 24 H 0.07 2.38 8.06 -52.48 -0.42 1.96 16 25 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 26 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 27 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 28 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.99 6.24 -51.93 -0.32 0.67 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.53 7.22 -51.93 -0.37 0.15 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 40 H 0.41 0.91 9.10 45.56 0.41 1.33 16 41 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 42 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.74 4.86 -51.93 -0.25 0.49 16 45 H 0.07 1.07 7.83 -51.93 -0.41 0.67 16 46 H 0.04 0.95 6.93 -51.92 -0.36 0.59 16 47 H 0.03 0.76 6.92 -51.93 -0.36 0.40 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -38.08 386.71 -7.04 -45.12 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.51 Total: 1.41 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.22 Total: 8.65 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.25 Total: -40.02 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.73 Total: -37.89 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.08 -7.04 -45.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.146 kcal (2) G-P(sol) polarization free energy of solvation -38.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds