Wall clock time and date at job start Wed Apr 1 2020 00:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47420 * 2 1 4 4 O 1.45197 * 109.47451 * 239.99463 * 2 1 3 5 5 C 1.34232 * 116.99832 * 90.00041 * 4 2 1 6 6 O 1.20824 * 120.00179 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99653 * 180.02562 * 5 4 2 8 8 H 1.08999 * 109.47270 * 60.00562 * 7 5 4 9 9 C 1.52996 * 109.47374 * 299.99950 * 7 5 4 10 10 C 1.52998 * 109.47033 * 180.02562 * 9 7 5 11 11 C 1.53005 * 109.47015 * 60.00449 * 10 9 7 12 12 C 1.52996 * 109.46854 * 299.99661 * 11 10 9 13 13 H 1.09007 * 109.46895 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47320 * 300.00018 * 12 11 10 15 15 O 1.20825 * 119.99876 * 119.99897 * 14 12 11 16 16 O 1.34230 * 119.99756 * 300.00311 * 14 12 11 17 17 C 1.52998 * 109.46614 * 180.02562 * 7 5 4 18 18 C 1.50710 * 109.46671 * 119.99556 * 2 1 3 19 19 O 1.21284 * 119.99561 * 104.54190 * 18 2 1 20 20 N 1.34773 * 120.00161 * 284.54151 * 18 2 1 21 21 C 1.46506 * 119.99912 * 354.65523 * 20 18 2 22 22 C 1.46495 * 120.00232 * 174.65346 * 20 18 2 23 23 C 1.50709 * 109.47043 * 89.99725 * 22 20 18 24 24 H 1.08004 * 119.99890 * 0.02562 * 23 22 20 25 25 C 1.37878 * 120.00080 * 180.02562 * 23 22 20 26 26 N 1.31515 * 120.00027 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99988 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47398 * 89.99564 * 27 25 23 29 29 H 1.48496 * 109.47305 * 210.00184 * 27 25 23 30 30 H 1.48506 * 109.46960 * 329.99860 * 27 25 23 31 31 H 1.09003 * 109.47255 * 174.89968 * 1 2 3 32 32 H 1.09003 * 109.47480 * 294.89743 * 1 2 3 33 33 H 1.09001 * 109.47307 * 54.90361 * 1 2 3 34 34 H 1.08999 * 109.47421 * 300.00518 * 9 7 5 35 35 H 1.09007 * 109.46895 * 60.00448 * 9 7 5 36 36 H 1.09006 * 109.46865 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47343 * 300.00086 * 10 9 7 38 38 H 1.08999 * 109.46977 * 59.99774 * 11 10 9 39 39 H 1.08999 * 109.46827 * 179.97438 * 11 10 9 40 40 H 0.96697 * 116.99559 * 180.02562 * 16 14 12 41 41 H 1.09006 * 109.47441 * 299.99987 * 17 7 5 42 42 H 1.09002 * 109.47208 * 60.00680 * 17 7 5 43 43 H 1.08997 * 109.46652 * 275.11232 * 21 20 18 44 44 H 1.09002 * 109.47141 * 35.11566 * 21 20 18 45 45 H 1.08991 * 109.46753 * 155.11585 * 21 20 18 46 46 H 1.09008 * 109.47208 * 330.00324 * 22 20 18 47 47 H 1.09000 * 109.47791 * 209.99857 * 22 20 18 48 48 H 0.96998 * 119.99904 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1854 5 6 2.2172 0.0639 -2.2811 6 8 1.9982 1.2517 -2.2504 7 6 2.7184 -0.5775 -3.5493 8 1 2.0088 -1.3372 -3.8773 9 6 4.0783 -1.2283 -3.2889 10 6 4.5873 -1.8789 -4.5767 11 6 4.7323 -0.8123 -5.6641 12 6 3.3724 -0.1615 -5.9246 13 1 3.4757 0.5987 -6.6989 14 6 2.3915 -1.2117 -6.3786 15 8 1.3883 -1.4187 -5.7378 16 8 2.6325 -1.9173 -7.4948 17 6 2.8637 0.4887 -4.6369 18 6 2.0322 -0.7104 1.2306 19 8 2.4829 -1.8328 1.1413 20 7 1.9805 -0.0984 2.4303 21 6 1.5461 1.2978 2.5223 22 6 2.3586 -0.8292 3.6423 23 6 3.8332 -0.6509 3.8970 24 1 4.4291 -0.0526 3.2236 25 6 4.4217 -1.2515 4.9898 26 7 5.7085 -1.0954 5.2123 27 14 3.3913 -2.2869 6.1541 28 1 3.3893 -3.6980 5.6917 29 1 3.9663 -2.2147 7.5213 30 1 1.9989 -1.7709 6.1748 31 1 -0.3634 -1.0236 -0.0914 32 1 -0.3634 0.4326 0.9322 33 1 -0.3634 0.5909 -0.8408 34 1 4.7878 -0.4686 -2.9609 35 1 3.9751 -1.9878 -2.5139 36 1 5.5561 -2.3429 -4.3910 37 1 3.8780 -2.6384 -4.9050 38 1 5.4417 -0.0527 -5.3357 39 1 5.0954 -1.2757 -6.5814 40 1 1.9743 -2.5796 -7.7461 41 1 1.8950 0.9528 -4.8227 42 1 3.5735 1.2481 -4.3088 43 1 2.3957 1.9554 2.3384 44 1 0.7722 1.4872 1.7785 45 1 1.1474 1.4892 3.5184 46 1 2.1380 -1.8887 3.5115 47 1 1.7940 -0.4427 4.4908 48 1 6.1224 -1.5176 5.9812 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827817101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:28 Heat of formation + Delta-G solvation = -245.356040 kcal Electronic energy + Delta-G solvation = -30985.837289 eV Core-core repulsion = 26618.683837 eV Total energy + Delta-G solvation = -4367.153452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34835 -41.59382 -40.62279 -38.75353 -37.59576 -37.01094 -36.75276 -34.85110 -33.45612 -32.44645 -31.98022 -30.26054 -27.66078 -26.34142 -25.53181 -25.30671 -23.70336 -22.87524 -21.76370 -20.69744 -20.43667 -19.18755 -19.06455 -18.88460 -18.27543 -17.57342 -17.36191 -17.06094 -17.03603 -16.65516 -16.36706 -15.86448 -15.73750 -15.14379 -15.00718 -14.79155 -14.54665 -14.48176 -14.10813 -13.96370 -13.81360 -13.68379 -13.52169 -13.47223 -13.34933 -13.14170 -13.04137 -12.82724 -12.69686 -12.67112 -12.43826 -12.21024 -12.06658 -12.04411 -11.95687 -11.86794 -11.77112 -11.30469 -11.23769 -11.07687 -10.84644 -10.70312 -9.55034 -8.35394 -6.41474 0.99453 1.21830 1.23873 1.33016 1.37512 1.45685 1.57715 2.15359 2.27332 2.30409 2.98650 3.33386 3.33946 3.53335 3.66089 3.69004 3.80495 3.85353 3.98992 4.07193 4.18640 4.23708 4.31843 4.43155 4.50060 4.51908 4.57605 4.60008 4.63775 4.73062 4.84223 4.85657 4.87002 4.92446 5.02962 5.04169 5.07595 5.15018 5.21202 5.29238 5.33602 5.41059 5.51107 5.69525 6.19170 6.43381 6.58334 6.59462 7.02770 7.11556 7.25497 8.81947 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002550 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.969776 B =10977.383635 C =11655.650079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.074 3.926 3 H 0.113 0.887 4 O -0.346 6.346 5 C 0.465 3.535 6 O -0.524 6.524 7 C -0.086 4.086 8 H 0.123 0.877 9 C -0.117 4.117 10 C -0.119 4.119 11 C -0.109 4.109 12 C -0.074 4.074 13 H 0.149 0.851 14 C 0.485 3.515 15 O -0.548 6.548 16 O -0.508 6.508 17 C -0.086 4.086 18 C 0.502 3.498 19 O -0.572 6.572 20 N -0.597 5.597 21 C 0.068 3.932 22 C 0.224 3.776 23 C -0.540 4.540 24 H 0.023 0.977 25 C 0.009 3.991 26 N -0.946 5.946 27 Si 0.951 3.049 28 H -0.276 1.276 29 H -0.274 1.274 30 H -0.232 1.232 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.425 0.575 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.021 0.979 47 H 0.063 0.937 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 3.944 -25.506 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.016 3.984 3 H 0.130 0.870 4 O -0.261 6.261 5 C 0.309 3.691 6 O -0.413 6.413 7 C -0.105 4.105 8 H 0.140 0.860 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.146 4.146 12 C -0.093 4.093 13 H 0.167 0.833 14 C 0.330 3.670 15 O -0.439 6.439 16 O -0.321 6.321 17 C -0.124 4.124 18 C 0.289 3.711 19 O -0.451 6.451 20 N -0.330 5.330 21 C -0.074 4.074 22 C 0.102 3.898 23 C -0.578 4.578 24 H 0.042 0.958 25 C -0.188 4.188 26 N -0.586 5.586 27 Si 0.773 3.227 28 H -0.202 1.202 29 H -0.199 1.199 30 H -0.155 1.155 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.287 0.713 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.040 0.960 47 H 0.081 0.919 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.891 3.923 -25.096 26.912 hybrid contribution -0.292 -0.910 0.892 1.307 sum -9.182 3.013 -24.204 26.062 Atomic orbital electron populations 1.22191 0.89156 1.04388 1.05655 1.22594 0.97948 0.96786 0.81074 0.86957 1.86647 1.76807 1.42533 1.20163 1.24462 0.73280 0.85764 0.85569 1.90591 1.49265 1.17015 1.84468 1.21477 1.00121 1.00574 0.88345 0.85978 1.21601 0.93861 1.00401 0.99640 1.21600 1.02287 0.98084 0.93633 1.21644 0.94130 0.98814 0.99989 1.21190 0.93927 0.95615 0.98549 0.83348 1.23795 0.85250 0.80717 0.77268 1.90680 1.30403 1.67275 1.55563 1.84492 1.54647 1.51157 1.41845 1.21344 1.03370 0.96179 0.91459 1.20628 0.78891 0.86514 0.85071 1.90666 1.46651 1.21750 1.86020 1.47835 1.64584 1.14297 1.06241 1.22185 1.00256 0.79616 1.05321 1.19488 0.94153 0.92735 0.83399 1.21534 0.94170 1.31946 1.10170 0.95825 1.25907 0.96215 0.97159 0.99561 1.70057 1.12489 1.45866 1.30197 0.85671 0.80453 0.78904 0.77650 1.20214 1.19948 1.15526 0.91213 0.87436 0.89370 0.90933 0.92444 0.89377 0.92526 0.88362 0.88171 0.71304 0.90827 0.88559 0.93064 0.88293 0.88618 0.96044 0.91936 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.20 71.98 0.66 -3.28 16 2 C 0.07 2.52 2.14 29.85 0.06 2.58 16 3 H 0.11 3.59 6.34 -2.39 -0.02 3.57 16 4 O -0.35 -12.53 9.37 -45.22 -0.42 -12.95 16 5 C 0.46 14.44 7.23 71.24 0.51 14.96 16 6 O -0.52 -16.94 15.20 21.97 0.33 -16.60 16 7 C -0.09 -2.09 2.33 -11.54 -0.03 -2.12 16 8 H 0.12 3.21 5.52 -2.39 -0.01 3.19 16 9 C -0.12 -2.66 5.13 30.59 0.16 -2.51 16 10 C -0.12 -1.84 5.70 30.60 0.17 -1.66 16 11 C -0.11 -1.07 5.39 30.59 0.16 -0.90 16 12 C -0.07 -0.86 3.11 -11.56 -0.04 -0.89 16 13 H 0.15 0.82 8.14 -2.38 -0.02 0.80 16 14 C 0.49 7.25 6.11 71.24 0.44 7.68 16 15 O -0.55 -12.35 14.42 21.97 0.32 -12.04 16 16 O -0.51 -4.77 13.33 -51.42 -0.69 -5.46 16 17 C -0.09 -1.53 3.66 30.58 0.11 -1.42 16 18 C 0.50 21.95 6.95 87.66 0.61 22.56 16 19 O -0.57 -30.88 16.21 15.26 0.25 -30.63 16 20 N -0.60 -24.90 2.86 -851.10 -2.43 -27.34 16 21 C 0.07 1.99 9.84 127.77 1.26 3.24 16 22 C 0.22 10.95 4.23 85.64 0.36 11.31 16 23 C -0.54 -32.35 9.94 25.60 0.25 -32.10 16 24 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 25 C 0.01 0.57 5.47 84.65 0.46 1.03 16 26 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 27 Si 0.95 44.35 27.47 68.60 1.88 46.24 16 28 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 29 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 30 H -0.23 -9.51 6.54 99.48 0.65 -8.86 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.17 6.24 -2.39 -0.01 2.16 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.62 8.11 -2.38 -0.02 1.60 16 36 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.06 0.94 7.22 -2.39 -0.02 0.92 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.67 8.11 -2.39 -0.02 0.65 16 40 H 0.43 1.07 9.10 -74.06 -0.67 0.39 16 41 H 0.07 1.45 8.06 -2.38 -0.02 1.43 16 42 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.10 2.12 4.86 -2.39 -0.01 2.11 16 45 H 0.10 2.43 7.83 -2.39 -0.02 2.41 16 46 H 0.02 1.12 6.93 -2.38 -0.02 1.10 16 47 H 0.06 2.70 6.92 -2.39 -0.02 2.69 16 48 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -88.09 386.71 4.97 -83.12 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.26 Total: 17.46 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 5.17 Total: 18.48 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -2.13 Total: -87.60 kcal Atomic # 8 Polarization: -77.47 SS G_CDS: -0.21 Total: -77.69 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.24 kcal Total: -88.09 4.97 -83.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.239 kcal (2) G-P(sol) polarization free energy of solvation -88.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds