Wall clock time and date at job start Wed Apr 1 2020 00:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47678 * 2 1 4 4 O 1.45198 * 109.47109 * 239.99731 * 2 1 3 5 5 C 1.34230 * 117.00175 * 90.00348 * 4 2 1 6 6 O 1.20831 * 119.99687 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00181 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47328 * 59.99716 * 7 5 4 9 9 C 1.52997 * 109.46910 * 299.99410 * 7 5 4 10 10 C 1.53006 * 109.47164 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47127 * 59.99836 * 10 9 7 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 15 15 O 1.20825 * 119.99661 * 239.99825 * 14 12 11 16 16 O 1.34225 * 120.00292 * 59.99644 * 14 12 11 17 17 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 18 18 C 1.50703 * 109.47313 * 119.99571 * 2 1 3 19 19 O 1.21286 * 120.00057 * 119.99575 * 18 2 1 20 20 N 1.34772 * 120.00263 * 300.00156 * 18 2 1 21 21 C 1.46500 * 119.99990 * 359.97438 * 20 18 2 22 22 C 1.46502 * 120.00150 * 179.97438 * 20 18 2 23 23 C 1.50699 * 109.46897 * 90.00228 * 22 20 18 24 24 H 1.07994 * 120.00264 * 359.97438 * 23 22 20 25 25 C 1.37879 * 119.99395 * 179.97438 * 23 22 20 26 26 N 1.31513 * 120.00660 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99715 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47035 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47248 * 120.00089 * 27 25 23 30 30 H 1.48495 * 109.47275 * 240.00395 * 27 25 23 31 31 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46814 * 299.99850 * 1 2 3 33 33 H 1.08994 * 109.47305 * 59.99917 * 1 2 3 34 34 H 1.09001 * 109.47375 * 300.00278 * 9 7 5 35 35 H 1.09000 * 109.47140 * 60.00295 * 9 7 5 36 36 H 1.08998 * 109.46505 * 299.99708 * 10 9 7 37 37 H 1.08996 * 109.46884 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 40 40 H 0.96695 * 116.99921 * 179.97438 * 16 14 12 41 41 H 1.08992 * 109.47554 * 59.99639 * 17 12 11 42 42 H 1.09004 * 109.47108 * 179.97438 * 17 12 11 43 43 H 1.09004 * 109.47537 * 89.99756 * 21 20 18 44 44 H 1.09003 * 109.47317 * 210.00128 * 21 20 18 45 45 H 1.09006 * 109.46892 * 329.99963 * 21 20 18 46 46 H 1.09009 * 109.47001 * 210.00196 * 22 20 18 47 47 H 1.09001 * 109.47289 * 329.99612 * 22 20 18 48 48 H 0.96998 * 120.00009 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9974 1.2517 -2.2506 7 6 2.7182 -0.5774 -3.5494 8 1 2.0087 -1.3371 -3.8774 9 6 4.0782 -1.2281 -3.2890 10 6 4.5873 -1.8787 -4.5769 11 6 4.7321 -0.8122 -5.6643 12 6 3.3721 -0.1614 -5.9246 13 1 2.6627 -0.9210 -6.2530 14 6 3.5147 0.8887 -6.9962 15 8 3.2377 2.0397 -6.7546 16 8 3.9493 0.5453 -8.2188 17 6 2.8631 0.4892 -4.6368 18 6 2.0323 -0.7103 1.2305 19 8 2.7296 -1.6965 1.1193 20 7 1.7068 -0.2499 2.4546 21 6 0.8650 0.9416 2.5890 22 6 2.1947 -0.9407 3.6508 23 6 3.5224 -0.3577 4.0611 24 1 3.9592 0.4467 3.4880 25 6 4.1793 -0.8512 5.1683 26 7 3.6472 -1.8304 5.8666 27 14 5.8254 -0.1290 5.6766 28 1 6.2032 0.9539 4.7334 29 1 5.7196 0.4259 7.0500 30 1 6.8616 -1.1923 5.6509 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 4.7877 -0.4684 -2.9610 35 1 3.9751 -1.9877 -2.5140 36 1 3.8779 -2.6383 -4.9051 37 1 5.5560 -2.3427 -4.3912 38 1 5.0944 -1.2757 -6.5819 39 1 5.4415 -0.0525 -5.3359 40 1 4.0241 1.2534 -8.8730 41 1 3.5724 1.2488 -4.3085 42 1 1.8944 0.9532 -4.8224 43 1 -0.1832 0.6441 2.6222 44 1 1.1229 1.4668 3.5086 45 1 1.0289 1.6003 1.7361 46 1 1.4766 -0.8151 4.4612 47 1 2.3154 -2.0020 3.4336 48 1 4.1096 -2.1778 6.6453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827817102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:32 Heat of formation + Delta-G solvation = -226.175328 kcal Electronic energy + Delta-G solvation = -30476.792503 eV Core-core repulsion = 26110.470790 eV Total energy + Delta-G solvation = -4366.321713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20135 -40.58127 -39.15197 -38.06606 -36.47846 -36.33421 -34.95936 -32.97630 -32.23959 -31.41498 -31.18308 -27.68989 -26.27938 -25.09327 -24.90379 -23.95679 -22.41580 -21.72564 -20.77800 -20.05817 -18.89481 -18.40452 -17.93990 -17.07014 -16.55749 -16.53382 -16.19804 -16.05290 -15.70461 -15.31521 -14.96053 -14.64469 -14.45759 -14.21371 -14.02262 -13.62765 -13.55274 -13.16437 -12.89799 -12.85708 -12.78780 -12.41257 -12.21507 -12.12389 -11.97961 -11.78301 -11.64831 -11.60181 -11.38683 -11.17046 -11.14767 -11.13006 -10.90997 -10.87206 -10.69710 -10.59456 -10.53648 -10.29173 -10.18758 -9.65073 -8.91833 -8.46974 -7.74394 -6.07775 -4.12637 1.82621 2.15090 2.35636 2.73176 3.25095 3.28404 3.36238 3.41080 3.83098 4.17783 4.22777 4.35227 4.42248 4.54174 4.65236 4.76715 4.85305 4.91134 4.93538 4.99105 5.00831 5.10380 5.12947 5.23601 5.26995 5.49105 5.55762 5.59680 5.63777 5.65926 5.66771 5.76223 5.82559 5.85357 5.96606 5.98831 6.03146 6.12788 6.21077 6.45592 6.96664 7.37014 7.44825 7.50794 7.73023 7.88519 8.18257 8.27560 8.83001 8.97892 9.52577 11.00363 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.002379 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.492584 B =11765.501642 C =12557.408721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.323 6.323 5 C 0.464 3.536 6 O -0.507 6.507 7 C -0.074 4.074 8 H 0.113 0.887 9 C -0.120 4.120 10 C -0.114 4.114 11 C -0.114 4.114 12 C -0.077 4.077 13 H 0.113 0.887 14 C 0.482 3.518 15 O -0.509 6.509 16 O -0.517 6.517 17 C -0.091 4.091 18 C 0.509 3.491 19 O -0.520 6.520 20 N -0.596 5.596 21 C 0.076 3.924 22 C 0.246 3.754 23 C -0.528 4.528 24 H 0.058 0.942 25 C 0.061 3.939 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.282 1.282 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.410 0.590 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 2.519 -25.042 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.123 0.877 4 O -0.238 6.238 5 C 0.307 3.693 6 O -0.395 6.395 7 C -0.094 4.094 8 H 0.130 0.870 9 C -0.157 4.157 10 C -0.152 4.152 11 C -0.152 4.152 12 C -0.096 4.096 13 H 0.131 0.869 14 C 0.324 3.676 15 O -0.397 6.397 16 O -0.329 6.329 17 C -0.128 4.128 18 C 0.293 3.707 19 O -0.395 6.395 20 N -0.329 5.329 21 C -0.068 4.068 22 C 0.128 3.872 23 C -0.567 4.567 24 H 0.076 0.924 25 C -0.141 4.141 26 N -0.533 5.533 27 Si 0.726 3.274 28 H -0.198 1.198 29 H -0.209 1.209 30 H -0.208 1.208 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.833 2.230 -24.501 24.899 hybrid contribution 0.814 1.167 0.012 1.423 sum -3.019 3.397 -24.488 24.907 Atomic orbital electron populations 1.22395 0.92489 1.04049 1.04291 1.22614 0.95660 0.97681 0.82987 0.87708 1.86601 1.76333 1.41380 1.19455 1.23642 0.74171 0.85897 0.85590 1.90664 1.48045 1.16567 1.84249 1.21001 0.99938 0.98816 0.89600 0.86951 1.21639 0.93901 1.01197 0.98977 1.21528 1.02463 0.97370 0.93819 1.21612 0.94323 0.98926 1.00333 1.21043 1.01101 0.95772 0.91682 0.86880 1.23465 0.72499 0.89340 0.82297 1.90763 1.45987 1.21636 1.81267 1.84527 1.79221 1.46187 1.22923 1.21332 1.03898 0.96763 0.90852 1.19770 0.81691 0.85385 0.83820 1.90699 1.36960 1.26001 1.85888 1.48061 1.49850 1.28331 1.06696 1.21888 0.93951 0.88045 1.02939 1.19358 0.94388 0.93741 0.79724 1.21458 1.04794 1.19170 1.11237 0.92383 1.24936 0.98001 0.94934 0.96216 1.69937 1.38951 1.26068 1.18327 0.86432 0.83658 0.79073 0.78212 1.19788 1.20920 1.20818 0.91009 0.88900 0.91399 0.90937 0.89152 0.90981 0.90358 0.90151 0.91026 0.73162 0.89712 0.89872 0.93011 0.90311 0.92285 0.94600 0.93633 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.18 37.16 0.34 -1.93 16 2 C 0.07 1.15 2.18 -27.88 -0.06 1.09 16 3 H 0.11 1.71 6.42 -51.93 -0.33 1.38 16 4 O -0.32 -5.27 9.32 -45.90 -0.43 -5.70 16 5 C 0.46 6.55 7.23 36.00 0.26 6.81 16 6 O -0.51 -8.19 15.20 -18.75 -0.29 -8.47 16 7 C -0.07 -0.74 2.63 -91.77 -0.24 -0.98 16 8 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 9 C -0.12 -1.13 5.14 -26.73 -0.14 -1.27 16 10 C -0.11 -0.75 5.92 -26.73 -0.16 -0.91 16 11 C -0.11 -0.72 5.14 -26.73 -0.14 -0.85 16 12 C -0.08 -0.55 2.63 -91.77 -0.24 -0.79 16 13 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 14 C 0.48 4.09 7.63 36.01 0.27 4.37 16 15 O -0.51 -6.22 16.74 -18.75 -0.31 -6.54 16 16 O -0.52 -3.03 13.33 -39.24 -0.52 -3.55 16 17 C -0.09 -0.87 3.06 -26.73 -0.08 -0.95 16 18 C 0.51 10.84 7.15 -10.99 -0.08 10.76 16 19 O -0.52 -13.32 16.08 -14.11 -0.23 -13.54 16 20 N -0.60 -12.57 2.86 -182.94 -0.52 -13.09 16 21 C 0.08 1.17 8.80 59.85 0.53 1.70 16 22 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 23 C -0.53 -14.91 9.39 -34.44 -0.32 -15.24 16 24 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 25 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 27 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 28 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.07 4.53 -51.93 -0.24 0.83 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.41 0.85 9.10 45.56 0.41 1.26 16 41 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 42 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 43 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 44 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 45 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 46 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 47 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -37.20 394.53 -7.48 -44.67 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.66 Total: -0.73 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -0.18 Total: 9.81 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.21 Total: -38.71 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.78 Total: -37.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.20 -7.48 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.502 kcal (2) G-P(sol) polarization free energy of solvation -37.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds