Wall clock time and date at job start Wed Apr 1 2020 00:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47678 * 2 1 4 4 O 1.45198 * 109.47109 * 239.99731 * 2 1 3 5 5 C 1.34230 * 117.00175 * 90.00348 * 4 2 1 6 6 O 1.20831 * 119.99687 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00181 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47328 * 59.99716 * 7 5 4 9 9 C 1.52997 * 109.46910 * 299.99410 * 7 5 4 10 10 C 1.53006 * 109.47164 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47127 * 59.99836 * 10 9 7 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 15 15 O 1.20825 * 119.99661 * 239.99825 * 14 12 11 16 16 O 1.34225 * 120.00292 * 59.99644 * 14 12 11 17 17 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 18 18 C 1.50703 * 109.47313 * 119.99571 * 2 1 3 19 19 O 1.21286 * 120.00057 * 119.99575 * 18 2 1 20 20 N 1.34772 * 120.00263 * 300.00156 * 18 2 1 21 21 C 1.46500 * 119.99990 * 359.97438 * 20 18 2 22 22 C 1.46502 * 120.00150 * 179.97438 * 20 18 2 23 23 C 1.50699 * 109.46897 * 90.00228 * 22 20 18 24 24 H 1.07994 * 120.00264 * 359.97438 * 23 22 20 25 25 C 1.37879 * 119.99395 * 179.97438 * 23 22 20 26 26 N 1.31513 * 120.00660 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99715 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47035 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47248 * 120.00089 * 27 25 23 30 30 H 1.48495 * 109.47275 * 240.00395 * 27 25 23 31 31 H 1.09000 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46814 * 299.99850 * 1 2 3 33 33 H 1.08994 * 109.47305 * 59.99917 * 1 2 3 34 34 H 1.09001 * 109.47375 * 300.00278 * 9 7 5 35 35 H 1.09000 * 109.47140 * 60.00295 * 9 7 5 36 36 H 1.08998 * 109.46505 * 299.99708 * 10 9 7 37 37 H 1.08996 * 109.46884 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 40 40 H 0.96695 * 116.99921 * 179.97438 * 16 14 12 41 41 H 1.08992 * 109.47554 * 59.99639 * 17 12 11 42 42 H 1.09004 * 109.47108 * 179.97438 * 17 12 11 43 43 H 1.09004 * 109.47537 * 89.99756 * 21 20 18 44 44 H 1.09003 * 109.47317 * 210.00128 * 21 20 18 45 45 H 1.09006 * 109.46892 * 329.99963 * 21 20 18 46 46 H 1.09009 * 109.47001 * 210.00196 * 22 20 18 47 47 H 1.09001 * 109.47289 * 329.99612 * 22 20 18 48 48 H 0.96998 * 120.00009 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9974 1.2517 -2.2506 7 6 2.7182 -0.5774 -3.5494 8 1 2.0087 -1.3371 -3.8774 9 6 4.0782 -1.2281 -3.2890 10 6 4.5873 -1.8787 -4.5769 11 6 4.7321 -0.8122 -5.6643 12 6 3.3721 -0.1614 -5.9246 13 1 2.6627 -0.9210 -6.2530 14 6 3.5147 0.8887 -6.9962 15 8 3.2377 2.0397 -6.7546 16 8 3.9493 0.5453 -8.2188 17 6 2.8631 0.4892 -4.6368 18 6 2.0323 -0.7103 1.2305 19 8 2.7296 -1.6965 1.1193 20 7 1.7068 -0.2499 2.4546 21 6 0.8650 0.9416 2.5890 22 6 2.1947 -0.9407 3.6508 23 6 3.5224 -0.3577 4.0611 24 1 3.9592 0.4467 3.4880 25 6 4.1793 -0.8512 5.1683 26 7 3.6472 -1.8304 5.8666 27 14 5.8254 -0.1290 5.6766 28 1 6.2032 0.9539 4.7334 29 1 5.7196 0.4259 7.0500 30 1 6.8616 -1.1923 5.6509 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 4.7877 -0.4684 -2.9610 35 1 3.9751 -1.9877 -2.5140 36 1 3.8779 -2.6383 -4.9051 37 1 5.5560 -2.3427 -4.3912 38 1 5.0944 -1.2757 -6.5819 39 1 5.4415 -0.0525 -5.3359 40 1 4.0241 1.2534 -8.8730 41 1 3.5724 1.2488 -4.3085 42 1 1.8944 0.9532 -4.8224 43 1 -0.1832 0.6441 2.6222 44 1 1.1229 1.4668 3.5086 45 1 1.0289 1.6003 1.7361 46 1 1.4766 -0.8151 4.4612 47 1 2.3154 -2.0020 3.4336 48 1 4.1096 -2.1778 6.6453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827817102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:31 Heat of formation + Delta-G solvation = -250.530659 kcal Electronic energy + Delta-G solvation = -30477.848630 eV Core-core repulsion = 26110.470790 eV Total energy + Delta-G solvation = -4367.377840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19630 -41.47329 -40.63569 -38.91911 -37.57668 -37.09612 -36.73308 -34.94377 -33.35583 -32.41077 -31.97630 -29.57438 -27.76494 -26.25128 -25.59063 -25.45860 -23.89413 -22.38421 -21.77055 -20.78373 -20.46618 -19.19962 -18.89685 -18.68554 -18.21074 -17.69204 -17.28423 -17.26034 -16.87704 -16.58461 -16.30683 -15.84783 -15.78674 -15.14363 -14.87353 -14.77884 -14.63476 -14.30959 -14.19548 -14.03721 -13.72506 -13.60359 -13.53232 -13.44883 -13.33173 -12.99939 -12.82591 -12.64074 -12.62078 -12.46059 -12.43597 -12.31730 -12.23195 -11.94105 -11.92766 -11.82837 -11.70838 -11.52511 -11.26871 -11.18076 -10.66751 -10.62442 -9.53292 -8.25364 -6.39757 1.02005 1.19425 1.26519 1.35222 1.37349 1.48919 1.60734 2.08903 2.32028 2.43444 3.04559 3.33050 3.38546 3.57311 3.66822 3.69017 3.82893 3.84122 3.98157 4.08644 4.26410 4.30383 4.32999 4.35233 4.51547 4.56784 4.59670 4.60985 4.66440 4.85374 4.90747 4.94174 4.98084 5.06682 5.08433 5.11309 5.17965 5.22352 5.25499 5.34877 5.41431 5.49774 5.62824 5.76540 6.01936 6.50848 6.63610 6.69006 6.99458 7.18762 7.34329 8.82084 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.002379 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.492584 B =11765.501642 C =12557.408721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.109 0.891 4 O -0.338 6.338 5 C 0.461 3.539 6 O -0.531 6.531 7 C -0.067 4.067 8 H 0.145 0.855 9 C -0.119 4.119 10 C -0.106 4.106 11 C -0.109 4.109 12 C -0.072 4.072 13 H 0.146 0.854 14 C 0.488 3.512 15 O -0.555 6.555 16 O -0.507 6.507 17 C -0.085 4.085 18 C 0.500 3.500 19 O -0.576 6.576 20 N -0.600 5.600 21 C 0.068 3.932 22 C 0.260 3.740 23 C -0.545 4.545 24 H 0.050 0.950 25 C 0.010 3.990 26 N -0.925 5.925 27 Si 0.966 3.034 28 H -0.270 1.270 29 H -0.267 1.267 30 H -0.280 1.280 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.427 0.573 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.034 0.966 47 H 0.003 0.997 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 2.844 -26.956 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 H 0.126 0.874 4 O -0.254 6.254 5 C 0.305 3.695 6 O -0.420 6.420 7 C -0.086 4.086 8 H 0.163 0.837 9 C -0.157 4.157 10 C -0.144 4.144 11 C -0.146 4.146 12 C -0.091 4.091 13 H 0.163 0.837 14 C 0.332 3.668 15 O -0.446 6.446 16 O -0.320 6.320 17 C -0.122 4.122 18 C 0.287 3.713 19 O -0.456 6.456 20 N -0.332 5.332 21 C -0.074 4.074 22 C 0.139 3.861 23 C -0.584 4.584 24 H 0.068 0.932 25 C -0.189 4.189 26 N -0.564 5.564 27 Si 0.791 3.209 28 H -0.195 1.195 29 H -0.192 1.192 30 H -0.206 1.206 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.288 0.712 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.052 0.948 47 H 0.021 0.979 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.149 2.586 -26.446 26.894 hybrid contribution 0.899 1.067 0.569 1.507 sum -3.250 3.653 -25.878 26.336 Atomic orbital electron populations 1.22397 0.89235 1.04631 1.06042 1.22502 0.97893 0.96522 0.81218 0.87352 1.86618 1.76747 1.42140 1.19856 1.24526 0.73274 0.85744 0.85912 1.90646 1.49156 1.17597 1.84569 1.21159 1.00653 0.99340 0.87409 0.83699 1.21632 0.93384 1.00307 1.00378 1.21511 1.03273 0.97589 0.91994 1.21593 0.93509 0.98500 1.01041 1.21064 1.02273 0.95810 0.89971 0.83688 1.23657 0.71363 0.88741 0.83018 1.90757 1.48218 1.23500 1.82115 1.84482 1.78289 1.46861 1.22373 1.21217 1.02781 0.96179 0.92062 1.20627 0.80687 0.84864 0.85111 1.90658 1.39457 1.28603 1.86850 1.48042 1.50173 1.29508 1.05488 1.22234 0.94805 0.86326 1.04012 1.18853 0.93924 0.91835 0.81439 1.21697 1.05978 1.19214 1.11511 0.93185 1.25818 1.01714 0.95224 0.96172 1.70038 1.40555 1.27057 1.18790 0.85387 0.78854 0.78278 0.78406 1.19489 1.19231 1.20581 0.91038 0.87134 0.89563 0.92740 0.90914 0.88718 0.89728 0.88042 0.92268 0.71156 0.92402 0.90825 0.89509 0.90694 0.89593 0.94833 0.97935 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 9.18 71.98 0.66 -3.32 16 2 C 0.08 2.53 2.18 29.85 0.06 2.60 16 3 H 0.11 3.48 6.42 -2.39 -0.02 3.47 16 4 O -0.34 -11.09 9.32 -45.06 -0.42 -11.51 16 5 C 0.46 12.92 7.23 71.23 0.51 13.44 16 6 O -0.53 -17.09 15.20 21.95 0.33 -16.76 16 7 C -0.07 -1.25 2.63 -11.54 -0.03 -1.29 16 8 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 9 C -0.12 -2.20 5.14 30.60 0.16 -2.05 16 10 C -0.11 -1.14 5.92 30.60 0.18 -0.96 16 11 C -0.11 -1.10 5.14 30.59 0.16 -0.94 16 12 C -0.07 -0.86 2.63 -11.54 -0.03 -0.89 16 13 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 14 C 0.49 7.49 7.63 71.24 0.54 8.03 16 15 O -0.56 -13.41 16.74 21.97 0.37 -13.04 16 16 O -0.51 -4.62 13.33 -51.37 -0.68 -5.30 16 17 C -0.08 -1.57 3.06 30.59 0.09 -1.47 16 18 C 0.50 21.81 7.15 87.66 0.63 22.44 16 19 O -0.58 -30.96 16.08 15.75 0.25 -30.71 16 20 N -0.60 -25.64 2.86 -851.10 -2.43 -28.08 16 21 C 0.07 2.00 8.80 127.77 1.12 3.13 16 22 C 0.26 13.98 5.16 85.63 0.44 14.42 16 23 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16 24 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 25 C 0.01 0.58 5.46 84.66 0.46 1.04 16 26 N -0.92 -55.54 13.29 21.45 0.28 -55.25 16 27 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 2.21 4.53 -2.38 -0.01 2.20 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.68 8.11 -2.39 -0.02 0.66 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.43 0.79 9.10 -74.06 -0.67 0.11 16 41 H 0.06 1.38 8.06 -2.39 -0.02 1.36 16 42 H 0.07 1.50 8.06 -2.38 -0.02 1.48 16 43 H 0.09 1.98 6.95 -2.39 -0.02 1.97 16 44 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 45 H 0.09 2.08 6.01 -2.38 -0.01 2.07 16 46 H 0.03 1.79 8.07 -2.38 -0.02 1.77 16 47 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 48 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -85.16 394.53 5.25 -79.91 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.31 Total: 10.78 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.21 Total: 22.82 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.15 Total: -83.33 kcal Atomic # 8 Polarization: -77.18 SS G_CDS: -0.15 Total: -77.33 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -85.16 5.25 -79.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827817102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.616 kcal (2) G-P(sol) polarization free energy of solvation -85.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds